Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0001674

Physical Location & Seq

Genomic Coordinates Forward (+)

1108644 .. 1109306

Gene Structure 663 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000015738

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGGCAAAGAAAACCATGGAAGTTGTGAAAGGCCTAGACTTGCAGAGGTACATGGGTCGCTGGTATGAAATTGCTTCATTCCCATCAAGGTTTCAGCCCAAGAATGGAGAGAACACAAGGGCCACCTACACTCTGAAAGAAGATGGCACTGTGAATGTGCTCAATGAGACCTTCACTAATGGGGTCAGAAGCTCCATAGAAGGCACTGCCTACAAGGCTGACCCTTCAAGTGATGAGGCAAAGCTCAAAGTCAAATTCTATCTCCCTCCATTTTTGCCCATCATCCCTATTACTGGGGATTACTGGGTTTTGTATATTGATGAGGATTATCAGTATGCTCTCATTGGTCAACCTAGCAGAAATTACCTTTGGATATTGAGCAGGAAGCCTCATCTGGATGAGGAGATTTACAACCAGCTAGTGCAGAAAGCCAAGGATGAGGACTATGACGTGAGCAAACTCCACAAGACACCACAGAGTGAGAATCCTCCAGAAGATGCACCCACCGACACAAAGGGTACCTGGTGGTTCAAGTCCCTCTTTGGAAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0009279 GO:0016020 GO:0019867 GO:0030312 GO:0030313 GO:0031975 GO:0044462 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipocalin_2

Protein Analysis

184

Amino Acids

21.21

Weight (kDa)

5.78

Isoelectric Point (pI)

47.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipocalin_2	PF08212	12 - 159	9.5e-55	Lipocalin-like domain
Lipocalin	PF00061	19 - 160	2.4e-08	Lipocalin / cytosolic fatty-acid binding protein family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001674)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58070
fragaria_vesca	FvH4_1g01260 FvH4_1g02260 FvH4_2g05890 FvH4_7g32350
malus_domestica	MD02G1010500.v1.1 MD07G1286300.v1.1 MD15G1155500.v1.1
prunus_persica	Prupe.7G259600_v2.0.a1
pyrus_communis	pycom02g00940 pycom15g13950
rosa_chinensis	RchiOBHm_Chr2g0086031 RchiOBHm_Chr2g0086041 RchiOBHm_Chr2g0086051 RchiOBHm_Chr2g0086061 RchiOBHm_Chr2g0122651
rosa_laevigata	RLG00000015736 RLG00000015737 RLG00000015738 RLG00000015739 RLG00000015742
rosa_multiflora	Rmu_co8177264.1_g000001 Rmu_sc0003133.1_g000024 Rmu_sc0017765.1_g000004 Rmu_ssc0000355.1_g000018 Rmu_ssc0000355.1_g000019 Rmu_ssc0000355.1_g000021
rosa_roxburghii	Rroxscaffold_2G00121400 Rroxscaffold_2G00154820
rosa_rugosa	Rorug01G0465300 Rorug01G0465400 Rorug01G0465500 Rorug01G0465500 Rorug02G0241100
rosa_samantha	Rh2AG014500 Rh2AG014600 Rh2AG014700 Rh2AG014800 Rh2AG015100 Rh2AG015200 Rh2BG015000 Rh2CG015600 Rh2CG015700 Rh2CG015800 Rh2CG016200 Rh2DG016900 Rh2DG017100
rosa_wichuraiana	Rw2G001290 Rw2G001300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	518
AccB1I	GGYRCC	1 cut(s)	518
AcsI	RAATTY	1 cut(s)	254
AdeI	CACNNNGTG	1 cut(s)	479
AfaI	GTAC	2 cut(s)	50, 520
AfiI	CCNNNNNNNGG	2 cut(s)	104, 293
AgsI	TTSAA	2 cut(s)	228, 532
AjiI	CACGTC	1 cut(s)	451
AjnI	CCWGG	1 cut(s)	521
AjuI	GAANNNNNNNTTGG	2 cut(s)	352, 384
AluBI	AGCT	3 cut(s)	192, 244, 418
AluI	AGCT	3 cut(s)	192, 244, 418
Alw21I	GWGCWC	1 cut(s)	162
Alw26I	GTCTC	1 cut(s)	161
AoxI	GGCC	2 cut(s)	31, 120
ApoI	RAATTY	1 cut(s)	254
Asp718I	GGTACC	1 cut(s)	518
AspS9I	GGNCC	1 cut(s)	120
BaeI	ACNNNNGTAYC	2 cut(s)	40, 73
BanI	GGYRCC	1 cut(s)	518
Bbv12I	GWGCWC	1 cut(s)	162
BccI	CCATC	3 cut(s)	91, 137, 287
BciT130I	CCWGG	1 cut(s)	523
BcoDI	GTCTC	1 cut(s)	161
BfaI	CTAG	3 cut(s)	35, 354, 419
BglI	GCCNNNNNGGC	1 cut(s)	215
Bme1390I	CCNGG	1 cut(s)	523
BmgBI	CACGTC	1 cut(s)	451
BmgT120I	GGNCC	1 cut(s)	120
BmiI	GGNNCC	1 cut(s)	520
BmrFI	CCNGG	1 cut(s)	523
BmrI	ACTGGG	2 cut(s)	303, 313
BmsI	GCATC	1 cut(s)	487
BmuI	ACTGGG	2 cut(s)	303, 313
BpmI	CTGGAG	1 cut(s)	474
BsaI	GGTCTC	1 cut(s)	161
BsaJI	CCNNGG	2 cut(s)	15, 432
Bsc4I	CCNNNNNNNGG	2 cut(s)	104, 293
Bse1I	ACTGG	2 cut(s)	298, 308
BseBI	CCWGG	1 cut(s)	523
BseDI	CCNNGG	2 cut(s)	15, 432
BseGI	GGATG	3 cut(s)	282, 403, 442
BseLI	CCNNNNNNNGG	2 cut(s)	104, 293
BseNI	ACTGG	2 cut(s)	298, 308
BseRI	GAGGAG	1 cut(s)	416
BsgI	GTGCAG	1 cut(s)	443
BshFI	GGCC	2 cut(s)	33, 122
BshNI	GGYRCC	1 cut(s)	518
BsiHKAI	GWGCWC	1 cut(s)	162
BslFI	GGGAC	1 cut(s)	520
BslI	CCNNNNNNNGG	2 cut(s)	104, 293
BsmAI	GTCTC	1 cut(s)	161
BsmFI	GGGAC	1 cut(s)	520
BsnI	GGCC	2 cut(s)	33, 122
Bso31I	GGTCTC	1 cut(s)	161
Bsp1286I	GDGCHC	1 cut(s)	162
Bsp19I	CCATGG	1 cut(s)	15
BspANI	GGCC	2 cut(s)	33, 122
BspLI	GGNNCC	1 cut(s)	520
BspT107I	GGYRCC	1 cut(s)	518
BspTNI	GGTCTC	1 cut(s)	161
BsrI	ACTGG	2 cut(s)	298, 308
BssECI	CCNNGG	2 cut(s)	15, 432
BssT1I	CCWWGG	2 cut(s)	15, 432
Bst2UI	CCWGG	1 cut(s)	523
Bst4CI	ACNGT	1 cut(s)	151
BstDSI	CCRYGG	1 cut(s)	15
BstF5I	GGATG	3 cut(s)	282, 403, 442
BstMAI	GTCTC	1 cut(s)	161
BstMWI	GCNNNNNNNGC	1 cut(s)	215
BstNI	CCWGG	1 cut(s)	523
BstSCI	CCNGG	1 cut(s)	521
BsuRI	GGCC	2 cut(s)	33, 122
BtgI	CCRYGG	1 cut(s)	15
BtrI	CACGTC	1 cut(s)	451
BtsCI	GGATG	3 cut(s)	282, 403, 442
BtsI	GCAGTG	1 cut(s)	204
BtsIMutI	CAGTG	2 cut(s)	147, 204
Cfr13I	GGNCC	1 cut(s)	120
CsiI	ACCWGGT	1 cut(s)	521
Csp6I	GTAC	2 cut(s)	49, 519
CviAII	CATG	2 cut(s)	16, 52
CviJI	RGCY	9 cut(s)	33, 97, 122, 192, 218, 244, 388, 418, 431
CviKI_1	RGCY	9 cut(s)	33, 97, 122, 192, 218, 244, 388, 418, 431
CviQI	GTAC	2 cut(s)	49, 519
DraIII	CACNNNGTG	1 cut(s)	479
Eco130I	CCWWGG	2 cut(s)	15, 432
Eco147I	AGGCCT	1 cut(s)	33
Eco31I	GGTCTC	1 cut(s)	161
EcoRII	CCWGG	1 cut(s)	521
EcoT14I	CCWWGG	2 cut(s)	15, 432
ErhI	CCWWGG	2 cut(s)	15, 432
FaeI	CATG	2 cut(s)	19, 55
FaiI	YATR	7 cut(s)	17, 53, 66, 197, 315, 336, 447
FalI	AAGNNNNNCTT	1 cut(s)	524
FaqI	GGGAC	1 cut(s)	520
FatI	CATG	2 cut(s)	15, 51
FokI	GGATG	3 cut(s)	269, 410, 449
FspBI	CTAG	3 cut(s)	35, 354, 419
GsuI	CTGGAG	1 cut(s)	474
HaeIII	GGCC	2 cut(s)	33, 122
Hin1II	CATG	2 cut(s)	19, 55
HincII	GTYRAC	1 cut(s)	350
HindII	GTYRAC	1 cut(s)	350
HinfI	GANTC	1 cut(s)	484
Hpy166II	GTNNAC	1 cut(s)	350
Hpy188I	TCNGA	2 cut(s)	135, 188
Hpy188III	TCNNGA	2 cut(s)	395, 491
Hpy8I	GTNNAC	1 cut(s)	350
HpyAV	CCTTC	3 cut(s)	181, 194, 234
HpyCH4III	ACNGT	1 cut(s)	151
HpyCH4IV	ACGT	1 cut(s)	450
HpyCH4V	TGCA	3 cut(s)	43, 424, 500
HpyF10VI	GCNNNNNNNGC	1 cut(s)	215
HpySE526I	ACGT	1 cut(s)	450
Hsp92II	CATG	2 cut(s)	19, 55
KpnI	GGTACC	1 cut(s)	522
LmnI	GCTCC	1 cut(s)	197
LpnPI	CCDG	9 cut(s)	46, 279, 289, 367, 380, 428, 504, 508, 535
LweI	GCATC	1 cut(s)	487
MabI	ACCWGGT	1 cut(s)	521
MaeI	CTAG	3 cut(s)	35, 354, 419
MaeII	ACGT	1 cut(s)	450
MboII	GAAGA	2 cut(s)	152, 506
MhlI	GDGCHC	1 cut(s)	162
MluCI	AATT	3 cut(s)	69, 254, 361
MnlI	CCTC	9 cut(s)	39, 229, 276, 316, 394, 399, 433, 498, 548
MslI	CAYNNNNRTG	1 cut(s)	396
MspR9I	CCNGG	1 cut(s)	523
MvaI	CCWGG	1 cut(s)	523
MwoI	GCNNNNNNNGC	1 cut(s)	215
NcoI	CCATGG	1 cut(s)	15
NlaIII	CATG	2 cut(s)	19, 55
NlaIV	GGNNCC	1 cut(s)	520
PceI	AGGCCT	1 cut(s)	33
PfeI	GAWTC	1 cut(s)	484
Psp6I	CCWGG	1 cut(s)	521
PspGI	CCWGG	1 cut(s)	521
PspN4I	GGNNCC	1 cut(s)	520
PspPI	GGNCC	1 cut(s)	120
RsaI	GTAC	2 cut(s)	50, 520
RsaNI	GTAC	2 cut(s)	49, 519
RseI	CAYNNNNRTG	1 cut(s)	396
Sau96I	GGNCC	1 cut(s)	120
ScrFI	CCNGG	1 cut(s)	523
SduI	GDGCHC	1 cut(s)	162
SexAI	ACCWGGT	1 cut(s)	521
SfaNI	GCATC	1 cut(s)	487
SmiMI	CAYNNNNRTG	1 cut(s)	396
Sse9I	AATT	3 cut(s)	69, 254, 361
SseBI	AGGCCT	1 cut(s)	33
SspMI	CTAG	3 cut(s)	35, 354, 419
StuI	AGGCCT	1 cut(s)	33
StyD4I	CCNGG	1 cut(s)	521
StyI	CCWWGG	2 cut(s)	15, 432
TaaI	ACNGT	1 cut(s)	151
TaiI	ACGT	1 cut(s)	453
TasI	AATT	3 cut(s)	69, 254, 361
TfiI	GAWTC	1 cut(s)	484
TscAI	CASTG	2 cut(s)	154, 211
TspDTI	ATGAA	2 cut(s)	66, 81
TspRI	CASTG	2 cut(s)	154, 211
XapI	RAATTY	1 cut(s)	254
XspI	CTAG	3 cut(s)	35, 354, 419

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.