Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0001674

Physical Location & Seq

Genomic Coordinates Forward (+)

1163108 .. 1163918

Gene Structure 811 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG015100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGGTGGTTTCACTCCTAAAAGTCGTTTATTTAAAAAAGAAAGCTTGTTTATCTGGAACCCATCAATCGAATTCTACAAAGAAATACTTGTTGAAGGCTTTTATCTTCCATTGGGAGTTTCCATGCGTGGTTTTGGCCATGTCTCTGGCACCGATCGACGACTATAAAGTTGTGTTAAGAGGGAAGACGCCGAGGGAGGTCAACCTCTTCTCGTTGAGAGCTGAGACATGGAAATCGATTAAATCCCCTACGAAAGGCACTACGCATAGGAAGGGGCTGTTTTTGAGAGAGGCACTTCATTGGCTAGCTTATGAGCGAGACAACACTGCTCCTTTTAAGTATTCCGGACTACCAATAATTCTATTTGCCTTTGATTTGACGAAGGAGGAGTTCCGGAAAATGCAGGTGCCTTGTAGTAGTATTCTGAACTACTTGACTTGTGAAAGCCGTTTGGGAGTTTCTTGTGAAGGATGCCTGTATATAGTGCATTATAGTCGGCTGTTTGAGCCTAGATGGATAGATTATGTTGTTGATTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like FBA_1

Protein Analysis

179

Amino Acids

20.8

Weight (kDa)

9.37

Isoelectric Point (pI)

37.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FBA_1	PF07734	54 - 153	5.1e-07	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001674)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58070
fragaria_vesca	FvH4_1g01260 FvH4_1g02260 FvH4_2g05890 FvH4_7g32350
malus_domestica	MD02G1010500.v1.1 MD07G1286300.v1.1 MD15G1155500.v1.1
prunus_persica	Prupe.7G259600_v2.0.a1
pyrus_communis	pycom02g00940 pycom15g13950
rosa_chinensis	RchiOBHm_Chr2g0086031 RchiOBHm_Chr2g0086041 RchiOBHm_Chr2g0086051 RchiOBHm_Chr2g0086061 RchiOBHm_Chr2g0122651
rosa_laevigata	RLG00000015736 RLG00000015737 RLG00000015738 RLG00000015739 RLG00000015742
rosa_multiflora	Rmu_co8177264.1_g000001 Rmu_sc0003133.1_g000024 Rmu_sc0017765.1_g000004 Rmu_ssc0000355.1_g000018 Rmu_ssc0000355.1_g000019 Rmu_ssc0000355.1_g000021
rosa_roxburghii	Rroxscaffold_2G00121400 Rroxscaffold_2G00154820
rosa_rugosa	Rorug01G0465300 Rorug01G0465400 Rorug01G0465500 Rorug01G0465500 Rorug02G0241100
rosa_samantha	Rh2AG014500 Rh2AG014600 Rh2AG014700 Rh2AG014800 Rh2AG015100 Rh2AG015200 Rh2BG015000 Rh2CG015600 Rh2CG015700 Rh2CG015800 Rh2CG016200 Rh2DG016900 Rh2DG017100
rosa_wichuraiana	Rw2G001290 Rw2G001300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	394
Acc36I	ACCTGC	1 cut(s)	394
AccB1I	GGYRCC	2 cut(s)	148, 406
AccIII	TCCGGA	2 cut(s)	344, 393
AcoI	YGGCCR	1 cut(s)	135
AcsI	RAATTY	1 cut(s)	70
AcyI	GRCGYC	1 cut(s)	188
AfiI	CCNNNNNNNGG	1 cut(s)	254
AgsI	TTSAA	1 cut(s)	94
AluBI	AGCT	3 cut(s)	44, 221, 308
AluI	AGCT	3 cut(s)	44, 221, 308
Alw26I	GTCTC	3 cut(s)	147, 218, 312
Aor13HI	TCCGGA	2 cut(s)	344, 393
AoxI	GGCC	1 cut(s)	135
ApoI	RAATTY	1 cut(s)	70
AsuNHI	GCTAGC	1 cut(s)	304
BalI	TGGCCA	1 cut(s)	137
BanI	GGYRCC	2 cut(s)	148, 406
BbsI	GAAGAC	1 cut(s)	191
BccI	CCATC	2 cut(s)	69, 507
BceAI	ACGGC	1 cut(s)	432
BcgI	CGANNNNNNTGC	2 cut(s)	476, 510
BcoDI	GTCTC	3 cut(s)	147, 218, 312
BfaI	CTAG	2 cut(s)	305, 510
BfuAI	ACCTGC	1 cut(s)	394
BmiI	GGNNCC	3 cut(s)	58, 150, 408
BmsI	GCATC	1 cut(s)	461
BmtI	GCTAGC	1 cut(s)	308
BpiI	GAAGAC	1 cut(s)	191
Bsa29I	ATCGAT	1 cut(s)	236
BsaHI	GRCGYC	1 cut(s)	188
BsaJI	CCNNGG	1 cut(s)	191
BsaWI	WCCGGW	2 cut(s)	344, 393
Bsc4I	CCNNNNNNNGG	1 cut(s)	254
BseAI	TCCGGA	2 cut(s)	344, 393
BseCI	ATCGAT	1 cut(s)	236
BseDI	CCNNGG	1 cut(s)	191
BseGI	GGATG	1 cut(s)	476
BseLI	CCNNNNNNNGG	1 cut(s)	254
BseMII	CTCAG	1 cut(s)	213
BseRI	GAGGAG	1 cut(s)	401
Bsh1285I	CGRYCG	1 cut(s)	156
BshFI	GGCC	1 cut(s)	137
BshNI	GGYRCC	2 cut(s)	148, 406
BshVI	ATCGAT	1 cut(s)	236
BsiEI	CGRYCG	1 cut(s)	156
BsiSI	CCGG	2 cut(s)	345, 394
BslI	CCNNNNNNNGG	1 cut(s)	254
BsmAI	GTCTC	3 cut(s)	147, 218, 312
BsnI	GGCC	1 cut(s)	137
Bsp13I	TCCGGA	2 cut(s)	344, 393
Bsp143I	GATC	1 cut(s)	153
BspANI	GGCC	1 cut(s)	137
BspCNI	CTCAG	1 cut(s)	214
BspDI	ATCGAT	1 cut(s)	236
BspEI	TCCGGA	2 cut(s)	344, 393
BspLI	GGNNCC	3 cut(s)	58, 150, 408
BspMI	ACCTGC	1 cut(s)	394
BspOI	GCTAGC	1 cut(s)	308
BspT107I	GGYRCC	2 cut(s)	148, 406
BssECI	CCNNGG	1 cut(s)	191
BssMI	GATC	1 cut(s)	153
BssNI	GRCGYC	1 cut(s)	188
Bst6I	CTCTTC	1 cut(s)	212
BstACI	GRCGYC	1 cut(s)	188
BstC8I	GCNNGC	1 cut(s)	306
BstDEI	CTNAG	1 cut(s)	222
BstENI	CCTNNNNNAGG	1 cut(s)	252
BstF5I	GGATG	1 cut(s)	476
BstKTI	GATC	1 cut(s)	156
BstMAI	GTCTC	3 cut(s)	147, 218, 312
BstMBI	GATC	1 cut(s)	153
BstMCI	CGRYCG	1 cut(s)	156
BstMWI	GCNNNNNNNGC	1 cut(s)	505
BstV2I	GAAGAC	1 cut(s)	191
BstXI	CCANNNNNNTGG	1 cut(s)	145
Bsu15I	ATCGAT	1 cut(s)	236
BsuRI	GGCC	1 cut(s)	137
BsuTUI	ATCGAT	1 cut(s)	236
BtsCI	GGATG	1 cut(s)	476
BtsI	GCAGTG	1 cut(s)	324
BtsIMutI	CAGTG	1 cut(s)	324
BveI	ACCTGC	1 cut(s)	394
Cac8I	GCNNGC	1 cut(s)	306
ClaI	ATCGAT	1 cut(s)	236
CseI	GACGC	1 cut(s)	196
CviAII	CATG	3 cut(s)	123, 139, 228
DdeI	CTNAG	1 cut(s)	222
DpnI	GATC	1 cut(s)	155
DpnII	GATC	1 cut(s)	153
DraI	TTTAAA	1 cut(s)	33
EaeI	YGGCCR	1 cut(s)	135
Eam1104I	CTCTTC	1 cut(s)	212
EarI	CTCTTC	1 cut(s)	212
EcoNI	CCTNNNNNAGG	1 cut(s)	252
EcoRI	GAATTC	1 cut(s)	70
FaeI	CATG	3 cut(s)	126, 142, 231
FalI	AAGNNNNNCTT	2 cut(s)	71, 103
FatI	CATG	3 cut(s)	122, 138, 227
FokI	GGATG	1 cut(s)	483
FspBI	CTAG	2 cut(s)	305, 510
HaeIII	GGCC	1 cut(s)	137
HapII	CCGG	2 cut(s)	345, 394
HgaI	GACGC	1 cut(s)	196
Hin1I	GRCGYC	1 cut(s)	188
Hin1II	CATG	3 cut(s)	126, 142, 231
HincII	GTYRAC	1 cut(s)	202
HindII	GTYRAC	1 cut(s)	202
HindIII	AAGCTT	1 cut(s)	42
HpaII	CCGG	2 cut(s)	345, 394
Hpy166II	GTNNAC	1 cut(s)	202
Hpy188I	TCNGA	1 cut(s)	426
Hpy188III	TCNNGA	3 cut(s)	54, 345, 394
Hpy8I	GTNNAC	1 cut(s)	202
Hpy99I	CGWCG	1 cut(s)	161
HpyAV	CCTTC	4 cut(s)	88, 265, 376, 461
HpyCH4V	TGCA	2 cut(s)	403, 487
HpyF10VI	GCNNNNNNNGC	1 cut(s)	505
HpyF3I	CTNAG	1 cut(s)	222
Hsp92I	GRCGYC	1 cut(s)	188
Hsp92II	CATG	3 cut(s)	126, 142, 231
Kpn2I	TCCGGA	2 cut(s)	344, 393
Kzo9I	GATC	1 cut(s)	153
LmnI	GCTCC	1 cut(s)	334
LpnPI	CCDG	6 cut(s)	39, 131, 358, 389, 407, 488
LweI	GCATC	1 cut(s)	461
MaeI	CTAG	2 cut(s)	305, 510
MalI	GATC	1 cut(s)	155
MboI	GATC	1 cut(s)	153
MboII	GAAGA	3 cut(s)	97, 196, 199
MlsI	TGGCCA	1 cut(s)	137
MluCI	AATT	2 cut(s)	70, 357
MluNI	TGGCCA	1 cut(s)	137
MnlI	CCTC	6 cut(s)	173, 186, 190, 215, 283, 379
Mox20I	TGGCCA	1 cut(s)	137
MroI	TCCGGA	2 cut(s)	344, 393
MscI	TGGCCA	1 cut(s)	137
MseI	TTAA	5 cut(s)	32, 176, 240, 336, 538
Msp20I	TGGCCA	1 cut(s)	137
MspI	CCGG	2 cut(s)	345, 394
MwoI	GCNNNNNNNGC	1 cut(s)	505
NdeII	GATC	1 cut(s)	153
NheI	GCTAGC	1 cut(s)	304
NlaIII	CATG	3 cut(s)	126, 142, 231
NlaIV	GGNNCC	3 cut(s)	58, 150, 408
NmeAIII	GCCGAG	1 cut(s)	216
PaqCI	CACCTGC	1 cut(s)	394
Ple19I	CGATCG	1 cut(s)	156
PspN4I	GGNNCC	3 cut(s)	58, 150, 408
PvuI	CGATCG	1 cut(s)	156
SaqAI	TTAA	5 cut(s)	32, 176, 240, 336, 538
Sau3AI	GATC	1 cut(s)	153
SetI	ASST	6 cut(s)	46, 201, 207, 223, 310, 408
SfaNI	GCATC	1 cut(s)	461
Sse9I	AATT	2 cut(s)	70, 357
SspMI	CTAG	2 cut(s)	305, 510
TaqI	TCGA	3 cut(s)	68, 156, 236
TasI	AATT	2 cut(s)	70, 357
Tru1I	TTAA	5 cut(s)	32, 176, 240, 336, 538
Tru9I	TTAA	5 cut(s)	32, 176, 240, 336, 538
TscAI	CASTG	1 cut(s)	331
TspDTI	ATGAA	1 cut(s)	287
TspRI	CASTG	1 cut(s)	331
XagI	CCTNNNNNAGG	1 cut(s)	252
XapI	RAATTY	1 cut(s)	70
XspI	CTAG	2 cut(s)	305, 510

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.