Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0001674

Physical Location & Seq

Genomic Coordinates Forward (+)

4888928 .. 4889973

Gene Structure 1046 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g05890.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGTTTGGGTTCATGTTTGGGTTTGGGTATCTTTCCACCACCGATGAGTACAAAGTTGTGATGGGTGCGGAGATGTTTTCATCCAATAAGGGATCATGGAAGCGGATTCAAGTACCTCCCTGCAGCGTCGGGCAATCATGTGGTGTGTTTTCTAGTGGTGCATTGCATTGGCTACTCTATTCCTGTGATCAAAAGCAGCAAGTGCCAAATCTGTATGCTTTCGATTTGGAGAAAGAGGAATTTTGGATGATGAAGCTGCCAGATGCTCTTCAAACCCTGGGCCTTGTTAGGAGCAGTATTTCATACCAACTTGGTGTTACTCGTGAAGGGTGCTTGTATGTAATGGTCCAGAGTGAGGTGTGGGATTCTGGTAAATTGGCCTCTTTTTATGTGGTTGATTTTTGGGTCATGAGAGACTATGACAACAGTGATTCATGGACTAAATCATTGGGTGTAAAGATTTCCAATCAGCCTGCGCGGCGGGATTGGTTTTTATCGATTGAAGCAATTTCGGTTTCGGAAACTAGTGCATTTGTGAGGAATACATATGCAGCAGTAGAACAAGGGGAACTCATGTCGACCATTTATCATCGCAATGAAGAAAGCTCCCGTATGTATATTCTTGAGAATGGTGCACAAAGCATGGTTGTATACGAAGAGTCTTATCACGTTGTCTTAATCCAACACGAGGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like FBA_1 FBA_3

Protein Analysis

232

Amino Acids

26.42

Weight (kDa)

4.94

Isoelectric Point (pI)

53.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FBA_1	PF07734	7 - 208	4.6e-13	F-box associated beta propeller domain
FBA_3	PF08268	26 - 151	2.6e-06	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001674)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58070
fragaria_vesca	FvH4_1g01260 FvH4_1g02260 FvH4_2g05890 FvH4_7g32350
malus_domestica	MD02G1010500.v1.1 MD07G1286300.v1.1 MD15G1155500.v1.1
prunus_persica	Prupe.7G259600_v2.0.a1
pyrus_communis	pycom02g00940 pycom15g13950
rosa_chinensis	RchiOBHm_Chr2g0086031 RchiOBHm_Chr2g0086041 RchiOBHm_Chr2g0086051 RchiOBHm_Chr2g0086061 RchiOBHm_Chr2g0122651
rosa_laevigata	RLG00000015736 RLG00000015737 RLG00000015738 RLG00000015739 RLG00000015742
rosa_multiflora	Rmu_co8177264.1_g000001 Rmu_sc0003133.1_g000024 Rmu_sc0017765.1_g000004 Rmu_ssc0000355.1_g000018 Rmu_ssc0000355.1_g000019 Rmu_ssc0000355.1_g000021
rosa_roxburghii	Rroxscaffold_2G00121400 Rroxscaffold_2G00154820
rosa_rugosa	Rorug01G0465300 Rorug01G0465400 Rorug01G0465500 Rorug01G0465500 Rorug02G0241100
rosa_samantha	Rh2AG014500 Rh2AG014600 Rh2AG014700 Rh2AG014800 Rh2AG015100 Rh2AG015200 Rh2BG015000 Rh2CG015600 Rh2CG015700 Rh2CG015800 Rh2CG016200 Rh2DG016900 Rh2DG017100
rosa_wichuraiana	Rw2G001290 Rw2G001300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	578, 651
AccII	CGCG	1 cut(s)	478
AciI	CCGC	4 cut(s)	68, 103, 478, 481
AclWI	GGATC	1 cut(s)	100
AcsI	RAATTY	1 cut(s)	239
AfaI	GTAC	2 cut(s)	50, 114
AfiI	CCNNNNNNNGG	2 cut(s)	355, 688
AgsI	TTSAA	3 cut(s)	110, 272, 503
AhlI	ACTAGT	1 cut(s)	524
AjnI	CCWGG	1 cut(s)	276
AluBI	AGCT	2 cut(s)	256, 606
AluI	AGCT	2 cut(s)	256, 606
Alw21I	GWGCWC	1 cut(s)	637
Alw26I	GTCTC	1 cut(s)	408
Alw44I	GTGCAC	1 cut(s)	633
AlwI	GGATC	1 cut(s)	100
AoxI	GGCC	3 cut(s)	280, 378, 690
ApaLI	GTGCAC	1 cut(s)	633
ApeKI	GCWGC	4 cut(s)	123, 196, 256, 551
ApoI	RAATTY	1 cut(s)	239
AspLEI	GCGC	1 cut(s)	478
AspS9I	GGNCC	2 cut(s)	280, 346
AvaII	GGWCC	1 cut(s)	346
BaeGI	GKGCMC	1 cut(s)	637
BauI	CACGAG	2 cut(s)	321, 686
Bbv12I	GWGCWC	1 cut(s)	637
BbvI	GCAGC	4 cut(s)	135, 208, 243, 563
BccI	CCATC	1 cut(s)	55
BciT130I	CCWGG	1 cut(s)	278
BclI	TGATCA	1 cut(s)	187
BcoDI	GTCTC	1 cut(s)	408
BcuI	ACTAGT	1 cut(s)	524
BfaI	CTAG	2 cut(s)	153, 525
BfmI	CTRYAG	1 cut(s)	121
BglI	GCCNNNNNGGC	1 cut(s)	478
BisI	GCNGC	5 cut(s)	124, 197, 257, 479, 552
BlsI	GCNGC	5 cut(s)	125, 198, 258, 480, 553
Bme1390I	CCNGG	1 cut(s)	278
Bme18I	GGWCC	1 cut(s)	346
BmgT120I	GGNCC	2 cut(s)	280, 346
BmrFI	CCNGG	1 cut(s)	278
BmsI	GCATC	1 cut(s)	253
BpuEI	CTTGAG	1 cut(s)	644
Bsa29I	ATCGAT	1 cut(s)	497
BsaJI	CCNNGG	2 cut(s)	276, 277
Bsc4I	CCNNNNNNNGG	2 cut(s)	355, 688
Bse3DI	GCAATG	2 cut(s)	161, 601
BseBI	CCWGG	1 cut(s)	278
BseCI	ATCGAT	1 cut(s)	497
BseDI	CCNNGG	2 cut(s)	276, 277
BseGI	GGATG	2 cut(s)	80, 252
BseLI	CCNNNNNNNGG	2 cut(s)	355, 688
BseMI	GCAATG	2 cut(s)	161, 601
BseSI	GKGCMC	1 cut(s)	637
BseXI	GCAGC	4 cut(s)	135, 208, 243, 563
Bsh1236I	CGCG	1 cut(s)	478
BshFI	GGCC	3 cut(s)	282, 380, 692
BshVI	ATCGAT	1 cut(s)	497
BsiHKAI	GWGCWC	1 cut(s)	637
BslI	CCNNNNNNNGG	2 cut(s)	355, 688
BsmAI	GTCTC	1 cut(s)	408
BsnI	GGCC	3 cut(s)	282, 380, 692
Bsp1286I	GDGCHC	1 cut(s)	637
Bsp143I	GATC	2 cut(s)	92, 187
BspACI	CCGC	4 cut(s)	68, 103, 478, 481
BspANI	GGCC	3 cut(s)	282, 380, 692
BspDI	ATCGAT	1 cut(s)	497
BspFNI	CGCG	1 cut(s)	478
BspHI	TCATGA	1 cut(s)	408
BspMAI	CTGCAG	1 cut(s)	125
BspPI	GGATC	1 cut(s)	100
BspQI	GCTCTTC	1 cut(s)	273
BsrDI	GCAATG	2 cut(s)	161, 601
BssECI	CCNNGG	2 cut(s)	276, 277
BssMI	GATC	2 cut(s)	92, 187
BssNAI	GTATAC	1 cut(s)	652
BssSI	CACGAG	2 cut(s)	321, 686
Bst1107I	GTATAC	1 cut(s)	652
Bst2BI	CACGAG	2 cut(s)	321, 686
Bst2UI	CCWGG	1 cut(s)	278
Bst4CI	ACNGT	1 cut(s)	428
Bst6I	CTCTTC	2 cut(s)	273, 651
BstAPI	GCANNNNNTGC	1 cut(s)	202
BstC8I	GCNNGC	1 cut(s)	474
BstF5I	GGATG	2 cut(s)	80, 252
BstFNI	CGCG	1 cut(s)	478
BstHHI	GCGC	1 cut(s)	478
BstKTI	GATC	2 cut(s)	95, 190
BstMAI	GTCTC	1 cut(s)	408
BstMBI	GATC	2 cut(s)	92, 187
BstMWI	GCNNNNNNNGC	2 cut(s)	202, 478
BstNI	CCWGG	1 cut(s)	278
BstSCI	CCNGG	1 cut(s)	276
BstSFI	CTRYAG	1 cut(s)	121
BstSLI	GKGCMC	1 cut(s)	637
BstUI	CGCG	1 cut(s)	478
BstV1I	GCAGC	4 cut(s)	135, 208, 243, 563
BstZ17I	GTATAC	1 cut(s)	652
Bsu15I	ATCGAT	1 cut(s)	497
BsuRI	GGCC	3 cut(s)	282, 380, 692
BsuTUI	ATCGAT	1 cut(s)	497
BtgZI	GCGATG	1 cut(s)	575
BtsCI	GGATG	2 cut(s)	80, 252
BtsIMutI	CAGTG	1 cut(s)	433
Cac8I	GCNNGC	1 cut(s)	474
CciI	TCATGA	1 cut(s)	408
CfoI	GCGC	1 cut(s)	478
Cfr13I	GGNCC	2 cut(s)	280, 346
ClaI	ATCGAT	1 cut(s)	497
CseI	GACGC	1 cut(s)	115
Csp6I	GTAC	2 cut(s)	49, 113
CviAII	CATG	7 cut(s)	13, 96, 138, 409, 435, 574, 643
CviJI	RGCY	7 cut(s)	172, 256, 282, 380, 472, 606, 692
CviKI_1	RGCY	7 cut(s)	172, 256, 282, 380, 472, 606, 692
CviQI	GTAC	2 cut(s)	49, 113
DpnI	GATC	2 cut(s)	94, 189
DpnII	GATC	2 cut(s)	92, 187
Eam1104I	CTCTTC	2 cut(s)	273, 651
EarI	CTCTTC	2 cut(s)	273, 651
Eco147I	AGGCCT	1 cut(s)	692
Eco47I	GGWCC	1 cut(s)	346
EcoRII	CCWGG	1 cut(s)	276
FaeI	CATG	7 cut(s)	16, 99, 141, 412, 438, 577, 646
FatI	CATG	7 cut(s)	12, 95, 137, 408, 434, 573, 642
FauI	CCCGC	1 cut(s)	474
FauNDI	CATATG	1 cut(s)	547
FbaI	TGATCA	1 cut(s)	187
FblI	GTMKAC	2 cut(s)	578, 651
Fnu4HI	GCNGC	5 cut(s)	124, 197, 257, 479, 552
FokI	GGATG	2 cut(s)	67, 259
Fsp4HI	GCNGC	5 cut(s)	124, 197, 257, 479, 552
FspBI	CTAG	2 cut(s)	153, 525
GlaI	GCGC	1 cut(s)	477
GluI	GCNGC	5 cut(s)	124, 197, 257, 479, 552
HaeIII	GGCC	3 cut(s)	282, 380, 692
HgaI	GACGC	1 cut(s)	115
HhaI	GCGC	1 cut(s)	478
Hin1II	CATG	7 cut(s)	16, 99, 141, 412, 438, 577, 646
Hin6I	GCGC	1 cut(s)	476
HinP1I	GCGC	1 cut(s)	476
HincII	GTYRAC	1 cut(s)	579
HindII	GTYRAC	1 cut(s)	579
HinfI	GANTC	4 cut(s)	106, 365, 431, 659
Hpy166II	GTNNAC	3 cut(s)	579, 635, 652
Hpy188I	TCNGA	1 cut(s)	520
Hpy188III	TCNNGA	4 cut(s)	323, 349, 409, 623
Hpy8I	GTNNAC	3 cut(s)	579, 635, 652
Hpy99I	CGWCG	1 cut(s)	131
HpyAV	CCTTC	1 cut(s)	320
HpyCH4III	ACNGT	1 cut(s)	428
HpyCH4IV	ACGT	1 cut(s)	669
HpyCH4V	TGCA	6 cut(s)	123, 161, 166, 530, 551, 635
HpyF10VI	GCNNNNNNNGC	2 cut(s)	202, 478
HpySE526I	ACGT	1 cut(s)	669
Hsp92II	CATG	7 cut(s)	16, 99, 141, 412, 438, 577, 646
HspAI	GCGC	1 cut(s)	476
Ksp22I	TGATCA	1 cut(s)	187
Kzo9I	GATC	2 cut(s)	92, 187
LguI	GCTCTTC	1 cut(s)	273
LmnI	GCTCC	2 cut(s)	291, 611
LpnPI	CCDG	8 cut(s)	133, 196, 263, 273, 290, 354, 362, 486
Lsp1109I	GCAGC	4 cut(s)	135, 208, 243, 563
LweI	GCATC	1 cut(s)	253
MaeI	CTAG	2 cut(s)	153, 525
MaeII	ACGT	1 cut(s)	669
MaeIII	GTNAC	1 cut(s)	316
MalI	GATC	2 cut(s)	94, 189
MboI	GATC	2 cut(s)	92, 187
MboII	GAAGA	3 cut(s)	260, 611, 668
MhlI	GDGCHC	1 cut(s)	637
MluCI	AATT	3 cut(s)	239, 374, 507
MlyI	GAGTC	1 cut(s)	668
MnlI	CCTC	6 cut(s)	126, 229, 349, 391, 531, 682
MseI	TTAA	1 cut(s)	677
MslI	CAYNNNNRTG	1 cut(s)	594
MspR9I	CCNGG	1 cut(s)	278
MvaI	CCWGG	1 cut(s)	278
MvnI	CGCG	1 cut(s)	478
MwoI	GCNNNNNNNGC	2 cut(s)	202, 478
NdeI	CATATG	1 cut(s)	547
NdeII	GATC	2 cut(s)	92, 187
NlaIII	CATG	7 cut(s)	16, 99, 141, 412, 438, 577, 646
PagI	TCATGA	1 cut(s)	408
PasI	CCCWGGG	1 cut(s)	277
PceI	AGGCCT	1 cut(s)	692
PciSI	GCTCTTC	1 cut(s)	273
PfeI	GAWTC	3 cut(s)	106, 365, 431
PkrI	GCNGC	5 cut(s)	125, 198, 258, 480, 553
PleI	GAGTC	1 cut(s)	667
PpsI	GAGTC	1 cut(s)	667
Psp6I	CCWGG	1 cut(s)	276
PspGI	CCWGG	1 cut(s)	276
PspPI	GGNCC	2 cut(s)	280, 346
PstI	CTGCAG	1 cut(s)	125
RsaI	GTAC	2 cut(s)	50, 114
RsaNI	GTAC	2 cut(s)	49, 113
RseI	CAYNNNNRTG	1 cut(s)	594
SalI	GTCGAC	1 cut(s)	577
SapI	GCTCTTC	1 cut(s)	273
SaqAI	TTAA	1 cut(s)	677
SatI	GCNGC	5 cut(s)	124, 197, 257, 479, 552
Sau3AI	GATC	2 cut(s)	92, 187
Sau96I	GGNCC	2 cut(s)	280, 346
SchI	GAGTC	1 cut(s)	668
ScrFI	CCNGG	1 cut(s)	278
SduI	GDGCHC	1 cut(s)	637
SetI	ASST	5 cut(s)	118, 258, 360, 608, 672
SfaNI	GCATC	1 cut(s)	253
SfcI	CTRYAG	1 cut(s)	121
SinI	GGWCC	1 cut(s)	346
SmiMI	CAYNNNNRTG	1 cut(s)	594
SmlI	CTYRAG	1 cut(s)	623
SmoI	CTYRAG	1 cut(s)	623
SpeI	ACTAGT	1 cut(s)	524
Sse9I	AATT	3 cut(s)	239, 374, 507
SseBI	AGGCCT	1 cut(s)	692
SsiI	CCGC	4 cut(s)	68, 103, 478, 481
SspMI	CTAG	2 cut(s)	153, 525
StuI	AGGCCT	1 cut(s)	692
StyD4I	CCNGG	1 cut(s)	276
TaaI	ACNGT	1 cut(s)	428
TaiI	ACGT	1 cut(s)	672
TaqI	TCGA	3 cut(s)	222, 497, 578
TasI	AATT	3 cut(s)	239, 374, 507
TatI	WGTACW	1 cut(s)	48
TauI	GCSGC	1 cut(s)	481
TfiI	GAWTC	3 cut(s)	106, 365, 431
Tru1I	TTAA	1 cut(s)	677
Tru9I	TTAA	1 cut(s)	677
TscAI	CASTG	1 cut(s)	433
TseI	GCWGC	4 cut(s)	123, 196, 256, 551
TspDTI	ATGAA	5 cut(s)	69, 266, 291, 423, 612
TspRI	CASTG	1 cut(s)	433
VneI	GTGCAC	1 cut(s)	633
VpaK11BI	GGWCC	1 cut(s)	346
XapI	RAATTY	1 cut(s)	239
XmiI	GTMKAC	2 cut(s)	578, 651
XspI	CTAG	2 cut(s)	153, 525

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.