Rh2CG015600

A Receptor for Ubiquitination Targets

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0001674
Physical Location & Seq
Reverse (-)
1252518 .. 1253982
1465 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG015600.1

Sequence Viewer

Length: 1413 bp
ATGGCGCGCATGAGGGAAACTGCAATAATACCTGAAGATATTATAGTGGAAATTGTGACGAGGTTGCCGGTCAAACCCGTAGGGCGATGCAGGTGCGTTTGTAAACGGTGGCGCTCTCTATTCTCCGACCCAAAGTTCGCCAAGTCGCACATACAATCAGCTTCTGAGCGGCAAACCCTCTGTCAGAGACTTGTTCTCGTCAGACATGAATACAAATCGCTAGAGTTGGAGTTGGGGGATCTAAAGGAGCTTAAGAATTCTTCGCTCAGAGTCGGACAGCTGAACACCCCATTCAAGAAACCTGGCCATGCTCTCCGCTTTTTAGGCTCTTGCAATGGGTTAGTAGCCTGTTATAACTGTTGTGAATATCCAAACATTAATTGTATGGATCCTAAATGTGGTTCATCCTTGTTTATCTGGAACCCATCAACCAGATTCTACAAAGAAATACCTGAGAAAGGCTTTGATCTTCCATGGGGGGGTTCCACATGTGGCTTTGGCCATGTCTCTGACACCGACGACTATAAAGTTGTTTTAAGAAGGAATTTTCTGAGTTGGGGAGAGGTTAGCATCTTCTCGTTGAGAGCTCAAACGTGGAAATCAATTAAATCCCCTATGAACGGCACGCTGCAACGGAAAGGGCTGCTTTTTAGAGAGGCACTTCATTGGCTAGCGCTTGACAGATACAGTACCCCTGATCCTCGTGAGTATTTTGGAATACCAATAGCTCTCTTTGCCTTTGATTTGGCGAAGGAGGGGTTCCGGAAAATGCAGGTGCCTAGTATTCTGAACTTCACTCATAAATGCCATTTGGGAGTTTCTTGTGAAGGATGCCTGTACATAATGCAGTATAATCGGCTGTTTGAGCATCAAGGGATATATTATGTTGTTGATTTTTGGGTCATGAGAGAATACGGAAACAGTGATTCCTGGACTAGATCCCTCAGCCTAAAGTTTTTCGATAAGTGGAGCTATAGGCTTGAGCCGATCTTGCTTATGGAAACTCGTGCAGTTGTGATGAAGAGGTCGAAAAAGTTTGATCAAGACAAAGAAGAGACGCCTGACATATATATGGTTCGTGATCATAATAAACAAGAGAACGCCAGCATGTATATTCTTTACAGTAATCCAACAGACATGATTGTATATGAAGAGAGTCTTAGTGAGTATCATGGAGTGGAAAGAGAAGATGATCAAAAGCTGGAGTGGAAAGAGAAGAAGATCAAAAGCTCTAATCCTCTACGTACCACAAGGCTTGATAACGCTGAAATGAAGAGGACCCACTTGCCTAGTGATACCAGTTGTTTTGTTTATTTATGCTCTAGTCTTTGTAGCAGAATCAAGTGTGTTTTTGTGAATGCAACTTCTAAGACCCATAGTTTAAACTTTAAAGGTGTTGAAAAAATAGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

470

Amino Acids

54.71

Weight (kDa)

8.95

Isoelectric Point (pI)

36.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 10 - 46 6.1e-10 F-box domain
F-box-like PF12937 10 - 45 9.8e-08 F-box-like
FBA_3 PF08268 104 - 314 2.2e-08 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 354
AarI CACCTGC 2 cut(s) 81, 763
Acc36I ACCTGC 2 cut(s) 81, 763
AccB1I GGYRCC 1 cut(s) 775
AccBSI CCGCTC 1 cut(s) 169
AccII CGCG 1 cut(s) 7
AccIII TCCGGA 1 cut(s) 762
AciI CCGC 2 cut(s) 169, 316
AclWI GGATC 5 cut(s) 246, 383, 396, 692, 933
AcoI YGGCCR 2 cut(s) 304, 499
AcsI RAATTY 2 cut(s) 256, 544
AcuI CTGAAG 1 cut(s) 54
AcyI GRCGYC 1 cut(s) 1058
AfaI GTAC 3 cut(s) 691, 839, 1246
AfeI AGCGCT 1 cut(s) 675
AfiI CCNNNNNNNGG 4 cut(s) 398, 458, 479, 620
AflII CTTAAG 1 cut(s) 251
AflIII ACRYGT 1 cut(s) 488
AgsI TTSAA 2 cut(s) 295, 1400
AjnI CCWGG 2 cut(s) 301, 929
AluBI AGCT 9 cut(s) 161, 250, 280, 587, 728, 972, 1201, 1230, 1409
AluI AGCT 9 cut(s) 161, 250, 280, 587, 728, 972, 1201, 1230, 1409
Alw21I GWGCWC 1 cut(s) 589
Alw26I GTCTC 3 cut(s) 181, 511, 1049
AlwI GGATC 5 cut(s) 246, 383, 396, 692, 933
AlwNI CAGNNNCTG 1 cut(s) 164
Aor13HI TCCGGA 1 cut(s) 762
Aor51HI AGCGCT 1 cut(s) 675
AoxI GGCC 2 cut(s) 304, 499
ApeKI GCWGC 2 cut(s) 628, 643
ApoI RAATTY 2 cut(s) 256, 544
ArsI GACNNNNNNTTYG 4 cut(s) 119, 151, 166, 198
AseI ATTAAT 1 cut(s) 378
AspLEI GCGC 4 cut(s) 7, 9, 114, 676
AspS9I GGNCC 1 cut(s) 1278
AsuNHI GCTAGC 1 cut(s) 670
AvaII GGWCC 1 cut(s) 1278
BalI TGGCCA 2 cut(s) 306, 501
BamHI GGATCC 1 cut(s) 388
BanI GGYRCC 1 cut(s) 775
BanII GRGCYC 1 cut(s) 589
BauI CACGAG 2 cut(s) 702, 1005
Bbv12I GWGCWC 1 cut(s) 589
BbvCI CCTCAGC 1 cut(s) 944
BbvI GCAGC 2 cut(s) 615, 630
BccI CCATC 1 cut(s) 433
BceAI ACGGC 1 cut(s) 637
BcgI CGANNNNNNTGC 4 cut(s) 75, 109, 836, 870
BciT130I CCWGG 2 cut(s) 303, 931
BclI TGATCA 3 cut(s) 1039, 1081, 1192
BcoDI GTCTC 3 cut(s) 181, 511, 1049
BfaI CTAG 6 cut(s) 221, 671, 780, 936, 1290, 1323
BfmI CTRYAG 1 cut(s) 973
BfoI RGCGCY 2 cut(s) 115, 677
BfrI CTTAAG 1 cut(s) 251
BfuAI ACCTGC 2 cut(s) 81, 763
BisI GCNGC 3 cut(s) 170, 629, 644
BlsI GCNGC 3 cut(s) 171, 630, 645
Bme1390I CCNGG 2 cut(s) 303, 931
Bme18I GGWCC 1 cut(s) 1278
BmgT120I GGNCC 1 cut(s) 1278
BmiI GGNNCC 6 cut(s) 390, 422, 484, 761, 777, 1280
BmrFI CCNGG 2 cut(s) 303, 931
BmsI GCATC 4 cut(s) 77, 579, 821, 877
BmtI GCTAGC 1 cut(s) 674
BpmI CTGGAG 1 cut(s) 1223
Bpu10I CCTNAGC 1 cut(s) 944
BpuEI CTTGAG 1 cut(s) 1001
BsaAI YACGTR 1 cut(s) 1244
BsaHI GRCGYC 1 cut(s) 1058
BsaJI CCNNGG 1 cut(s) 473
BsaWI WCCGGW 1 cut(s) 762
Bsc4I CCNNNNNNNGG 4 cut(s) 398, 458, 479, 620
Bse118I RCCGGY 1 cut(s) 67
Bse1I ACTGG 1 cut(s) 1299
Bse3DI GCAATG 1 cut(s) 340
BseAI TCCGGA 1 cut(s) 762
BseBI CCWGG 2 cut(s) 303, 931
BseDI CCNNGG 1 cut(s) 473
BseGI GGATG 2 cut(s) 404, 836
BseLI CCNNNNNNNGG 4 cut(s) 398, 458, 479, 620
BseMI GCAATG 1 cut(s) 340
BseMII CTCAG 5 cut(s) 156, 280, 444, 542, 958
BseNI ACTGG 1 cut(s) 1299
BsePI GCGCGC 1 cut(s) 5
BseXI GCAGC 2 cut(s) 615, 630
BsgI GTGCAG 1 cut(s) 1029
Bsh1236I CGCG 1 cut(s) 7
BshFI GGCC 2 cut(s) 306, 501
BshNI GGYRCC 1 cut(s) 775
BsiHKAI GWGCWC 1 cut(s) 589
BsiSI CCGG 2 cut(s) 68, 763
BslI CCNNNNNNNGG 4 cut(s) 398, 458, 479, 620
BsmAI GTCTC 3 cut(s) 181, 511, 1049
BsmBI CGTCTC 1 cut(s) 1049
BsmI GAATGC 1 cut(s) 1363
BsnI GGCC 2 cut(s) 306, 501
Bsp1286I GDGCHC 1 cut(s) 589
Bsp13I TCCGGA 1 cut(s) 762
Bsp1407I TGTACA 1 cut(s) 837
Bsp19I CCATGG 1 cut(s) 473
BspACI CCGC 2 cut(s) 169, 316
BspANI GGCC 2 cut(s) 306, 501
BspCNI CTCAG 5 cut(s) 157, 279, 445, 543, 957
BspEI TCCGGA 1 cut(s) 762
BspFNI CGCG 1 cut(s) 7
BspHI TCATGA 1 cut(s) 903
BspLI GGNNCC 6 cut(s) 390, 422, 484, 761, 777, 1280
BspMI ACCTGC 2 cut(s) 81, 763
BspOI GCTAGC 1 cut(s) 674
BspPI GGATC 5 cut(s) 246, 383, 396, 692, 933
BspT107I GGYRCC 1 cut(s) 775
BspTI CTTAAG 1 cut(s) 251
BsrBI CCGCTC 1 cut(s) 169
BsrDI GCAATG 1 cut(s) 340
BsrFI RCCGGY 1 cut(s) 67
BsrGI TGTACA 1 cut(s) 837
BsrI ACTGG 1 cut(s) 1299
BssAI RCCGGY 1 cut(s) 67
BssECI CCNNGG 1 cut(s) 473
BssHII GCGCGC 1 cut(s) 5
BssNI GRCGYC 1 cut(s) 1058
BssSI CACGAG 2 cut(s) 702, 1005
BssT1I CCWWGG 1 cut(s) 473
Bst2BI CACGAG 2 cut(s) 702, 1005
Bst2UI CCWGG 2 cut(s) 303, 931
Bst4CI ACNGT 5 cut(s) 108, 359, 689, 923, 1124
Bst6I CTCTTC 4 cut(s) 1016, 1047, 1146, 1268
BstACI GRCGYC 1 cut(s) 1058
BstAFI CTTAAG 1 cut(s) 251
BstAUI TGTACA 1 cut(s) 837
BstBAI YACGTR 1 cut(s) 1244
BstC8I GCNNGC 4 cut(s) 7, 626, 672, 1105
BstDEI CTNAG 8 cut(s) 165, 266, 453, 551, 944, 1160, 1368, 1410
BstDSI CCRYGG 1 cut(s) 473
BstENI CCTNNNNNAGG 1 cut(s) 456
BstF5I GGATG 2 cut(s) 404, 836
BstFNI CGCG 1 cut(s) 7
BstH2I RGCGCY 2 cut(s) 115, 677
BstHHI GCGC 4 cut(s) 7, 9, 114, 676
BstMAI GTCTC 3 cut(s) 181, 511, 1049
BstMWI GCNNNNNNNGC 4 cut(s) 324, 734, 865, 991
BstNI CCWGG 2 cut(s) 303, 931
BstNSI RCATGY 2 cut(s) 492, 1111
BstSCI CCNGG 2 cut(s) 301, 929
BstSFI CTRYAG 1 cut(s) 973
BstSNI TACGTA 1 cut(s) 1244
BstUI CGCG 1 cut(s) 7
BstV1I GCAGC 2 cut(s) 615, 630
BstX2I RGATCY 3 cut(s) 238, 388, 938
BstYI RGATCY 3 cut(s) 238, 388, 938
BsuRI GGCC 2 cut(s) 306, 501
BtgI CCRYGG 1 cut(s) 473
BtgZI GCGATG 1 cut(s) 100
BtsCI GGATG 2 cut(s) 404, 836
BtsIMutI CAGTG 1 cut(s) 928
BveI ACCTGC 2 cut(s) 81, 763
Cac8I GCNNGC 4 cut(s) 7, 626, 672, 1105
CaiI CAGNNNCTG 1 cut(s) 164
CciI TCATGA 1 cut(s) 903
CfoI GCGC 4 cut(s) 7, 9, 114, 676
Cfr10I RCCGGY 1 cut(s) 67
Cfr13I GGNCC 1 cut(s) 1278
CseI GACGC 1 cut(s) 1066
Csp6I GTAC 3 cut(s) 690, 838, 1245
CspCI CAANNNNNGTGG 2 cut(s) 1237, 1272
CviQI GTAC 3 cut(s) 690, 838, 1245
DdeI CTNAG 8 cut(s) 165, 266, 453, 551, 944, 1160, 1368, 1410
DraI TTTAAA 2 cut(s) 1383, 1390
EaeI YGGCCR 2 cut(s) 304, 499
Eam1104I CTCTTC 4 cut(s) 1016, 1047, 1146, 1268
EarI CTCTTC 4 cut(s) 1016, 1047, 1146, 1268
Ecl136II GAGCTC 1 cut(s) 587
Eco105I TACGTA 1 cut(s) 1244
Eco130I CCWWGG 1 cut(s) 473
Eco24I GRGCYC 1 cut(s) 589
Eco47I GGWCC 1 cut(s) 1278
Eco47III AGCGCT 1 cut(s) 675
Eco53kI GAGCTC 1 cut(s) 587
Eco57I CTGAAG 1 cut(s) 54
EcoICRI GAGCTC 1 cut(s) 587
EcoNI CCTNNNNNAGG 1 cut(s) 456
EcoO109I RGGNCCY 1 cut(s) 1278
EcoRI GAATTC 1 cut(s) 256
EcoRII CCWGG 2 cut(s) 301, 929
EcoT14I CCWWGG 1 cut(s) 473
EcoT38I GRGCYC 1 cut(s) 589
ErhI CCWWGG 1 cut(s) 473
Esp3I CGTCTC 1 cut(s) 1049
FalI AAGNNNNNCTT 4 cut(s) 630, 662, 1143, 1175
FbaI TGATCA 3 cut(s) 1039, 1081, 1192
Fnu4HI GCNGC 3 cut(s) 170, 629, 644
FokI GGATG 2 cut(s) 391, 843
FriOI GRGCYC 1 cut(s) 589
Fsp4HI GCNGC 3 cut(s) 170, 629, 644
FspBI CTAG 6 cut(s) 221, 671, 780, 936, 1290, 1323
GlaI GCGC 4 cut(s) 6, 8, 113, 675
GluI GCNGC 3 cut(s) 170, 629, 644
GsuI CTGGAG 1 cut(s) 1223
HaeII RGCGCY 2 cut(s) 115, 677
HaeIII GGCC 2 cut(s) 306, 501
HapII CCGG 2 cut(s) 68, 763
HgaI GACGC 1 cut(s) 1066
HhaI GCGC 4 cut(s) 7, 9, 114, 676
Hin1I GRCGYC 1 cut(s) 1058
Hin6I GCGC 4 cut(s) 5, 7, 112, 674
HinP1I GCGC 4 cut(s) 5, 7, 112, 674
HinfI GANTC 5 cut(s) 270, 435, 926, 1156, 1338
HpaII CCGG 2 cut(s) 68, 763
Hpy166II GTNNAC 1 cut(s) 104
Hpy188I TCNGA 9 cut(s) 127, 166, 186, 203, 269, 275, 511, 552, 789
Hpy188III TCNNGA 7 cut(s) 295, 418, 704, 763, 904, 1043, 1079
Hpy8I GTNNAC 1 cut(s) 104
Hpy99I CGWCG 1 cut(s) 521
HpyAV CCTTC 3 cut(s) 534, 745, 821
HpyCH4III ACNGT 5 cut(s) 108, 359, 689, 923, 1124
HpyCH4IV ACGT 2 cut(s) 593, 1243
HpyCH4V TGCA 8 cut(s) 23, 90, 333, 631, 772, 847, 1010, 1361
HpyF10VI GCNNNNNNNGC 4 cut(s) 324, 734, 865, 991
HpyF3I CTNAG 8 cut(s) 165, 266, 453, 551, 944, 1160, 1368, 1410
HpySE526I ACGT 2 cut(s) 593, 1243
Hsp92I GRCGYC 1 cut(s) 1058
HspAI GCGC 4 cut(s) 5, 7, 112, 674
Kpn2I TCCGGA 1 cut(s) 762
Ksp22I TGATCA 3 cut(s) 1039, 1081, 1192
LmnI GCTCC 2 cut(s) 247, 969
Lsp1109I GCAGC 2 cut(s) 615, 630
LweI GCATC 4 cut(s) 77, 579, 821, 877
MaeI CTAG 6 cut(s) 221, 671, 780, 936, 1290, 1323
MaeII ACGT 2 cut(s) 593, 1243
MaeIII GTNAC 1 cut(s) 55
MbiI CCGCTC 1 cut(s) 169
MflI RGATCY 3 cut(s) 238, 388, 938
MhlI GDGCHC 1 cut(s) 589
MlsI TGGCCA 2 cut(s) 306, 501
MluCI AATT 5 cut(s) 51, 256, 379, 544, 603
MluNI TGGCCA 2 cut(s) 306, 501
MlyI GAGTC 2 cut(s) 279, 1165
MmeI TCCRAC 4 cut(s) 150, 207, 253, 1154
Mox20I TGGCCA 2 cut(s) 306, 501
MroI TCCGGA 1 cut(s) 762
MscI TGGCCA 2 cut(s) 306, 501
MseI TTAA 6 cut(s) 252, 378, 536, 606, 1382, 1389
MslI CAYNNNNRTG 1 cut(s) 1070
Msp20I TGGCCA 2 cut(s) 306, 501
MspA1I CMGCKG 1 cut(s) 280
MspCI CTTAAG 1 cut(s) 251
MspI CCGG 2 cut(s) 68, 763
MspR9I CCNGG 2 cut(s) 303, 931
MssI GTTTAAAC 1 cut(s) 1383
Mva1269I GAATGC 1 cut(s) 1363
MvaI CCWGG 2 cut(s) 303, 931
MvnI CGCG 1 cut(s) 7
MwoI GCNNNNNNNGC 4 cut(s) 324, 734, 865, 991
NcoI CCATGG 1 cut(s) 473
NheI GCTAGC 1 cut(s) 670
NlaIV GGNNCC 6 cut(s) 390, 422, 484, 761, 777, 1280
NmuCI GTSAC 1 cut(s) 55
NspI RCATGY 2 cut(s) 492, 1111
PagI TCATGA 1 cut(s) 903
PaqCI CACCTGC 2 cut(s) 81, 763
PauI GCGCGC 1 cut(s) 5
PciI ACATGT 1 cut(s) 488
PctI GAATGC 1 cut(s) 1363
PfeI GAWTC 3 cut(s) 435, 926, 1338
PfoI TCCNGGA 1 cut(s) 929
PkrI GCNGC 3 cut(s) 171, 630, 645
PleI GAGTC 2 cut(s) 278, 1164
PmeI GTTTAAAC 1 cut(s) 1383
PpsI GAGTC 2 cut(s) 278, 1164
Ppu21I YACGTR 1 cut(s) 1244
PpuMI RGGWCCY 1 cut(s) 1278
PscI ACATGT 1 cut(s) 488
PshBI ATTAAT 1 cut(s) 378
PsiI TTATAA 1 cut(s) 354
Psp124BI GAGCTC 1 cut(s) 589
Psp5II RGGWCCY 1 cut(s) 1278
Psp6I CCWGG 2 cut(s) 301, 929
PspGI CCWGG 2 cut(s) 301, 929
PspN4I GGNNCC 6 cut(s) 390, 422, 484, 761, 777, 1280
PspPI GGNCC 1 cut(s) 1278
PspPPI RGGWCCY 1 cut(s) 1278
PstNI CAGNNNCTG 1 cut(s) 164
PsuI RGATCY 3 cut(s) 238, 388, 938
PteI GCGCGC 1 cut(s) 5
PvuII CAGCTG 1 cut(s) 280
RsaI GTAC 3 cut(s) 691, 839, 1246
RsaNI GTAC 3 cut(s) 690, 838, 1245
RseI CAYNNNNRTG 1 cut(s) 1070
SacI GAGCTC 1 cut(s) 589
SaqAI TTAA 6 cut(s) 252, 378, 536, 606, 1382, 1389
SatI GCNGC 3 cut(s) 170, 629, 644
Sau96I GGNCC 1 cut(s) 1278
SchI GAGTC 2 cut(s) 279, 1165
ScrFI CCNGG 2 cut(s) 303, 931
SduI GDGCHC 1 cut(s) 589
SfaNI GCATC 4 cut(s) 77, 579, 821, 877
SfcI CTRYAG 1 cut(s) 973
SinI GGWCC 1 cut(s) 1278
SmiMI CAYNNNNRTG 1 cut(s) 1070
SmlI CTYRAG 2 cut(s) 251, 980
SmoI CTYRAG 2 cut(s) 251, 980
SnaBI TACGTA 1 cut(s) 1244
Sse9I AATT 5 cut(s) 51, 256, 379, 544, 603
SsiI CCGC 2 cut(s) 169, 316
SspMI CTAG 6 cut(s) 221, 671, 780, 936, 1290, 1323
SstI GAGCTC 1 cut(s) 589
StyD4I CCNGG 2 cut(s) 301, 929
StyI CCWWGG 1 cut(s) 473
TaaI ACNGT 5 cut(s) 108, 359, 689, 923, 1124
TaiI ACGT 2 cut(s) 596, 1246
TaqI TCGA 2 cut(s) 960, 1028
TasI AATT 5 cut(s) 51, 256, 379, 544, 603
TatI WGTACW 1 cut(s) 837
TauI GCSGC 1 cut(s) 172
TfiI GAWTC 3 cut(s) 435, 926, 1338
Tru1I TTAA 6 cut(s) 252, 378, 536, 606, 1382, 1389
Tru9I TTAA 6 cut(s) 252, 378, 536, 606, 1382, 1389
TscAI CASTG 1 cut(s) 928
TseFI GTSAC 1 cut(s) 55
TseI GCWGC 2 cut(s) 628, 643
Tsp45I GTSAC 1 cut(s) 55
TspDTI ATGAA 7 cut(s) 222, 393, 632, 653, 1034, 1164, 1286
TspGWI ACGGA 2 cut(s) 649, 930
TspRI CASTG 1 cut(s) 928
Vha464I CTTAAG 1 cut(s) 251
VpaK11BI GGWCC 1 cut(s) 1278
VspI ATTAAT 1 cut(s) 378
XagI CCTNNNNNAGG 1 cut(s) 456
XapI RAATTY 2 cut(s) 256, 544
XceI RCATGY 2 cut(s) 492, 1111
XspI CTAG 6 cut(s) 221, 671, 780, 936, 1290, 1323
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.