Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0001674

Physical Location & Seq

Genomic Coordinates Forward (+)

34833618 .. 34833815

Gene Structure 198 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1286300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 198 bp

ATGGAAGTTGTGAAGGGCCTGGATTTACAGCGCTACATGGCGCGGTGGTACGAGATTGCCTCTGTTCCGTCGCAGTTTCAACCCAAGAATGATGAGAACACGCGTGCCACCTACACTCTGAAAGACGACGGCACCGTGAATGTGCTAAACAAGACTTGGATCGACGGGAATAGGGGGTTCATCCAGGACATCGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0009279 GO:0016020 GO:0019867 GO:0030312 GO:0030313 GO:0031975 GO:0044462 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipocalin_2

Protein Analysis

66

Amino Acids

7.52

Weight (kDa)

5.13

Isoelectric Point (pI)

38.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipocalin_2	PF08212	7 - 62	2.3e-15	Lipocalin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001674)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58070
fragaria_vesca	FvH4_1g01260 FvH4_1g02260 FvH4_2g05890 FvH4_7g32350
malus_domestica	MD02G1010500.v1.1 MD07G1286300.v1.1 MD15G1155500.v1.1
prunus_persica	Prupe.7G259600_v2.0.a1
pyrus_communis	pycom02g00940 pycom15g13950
rosa_chinensis	RchiOBHm_Chr2g0086031 RchiOBHm_Chr2g0086041 RchiOBHm_Chr2g0086051 RchiOBHm_Chr2g0086061 RchiOBHm_Chr2g0122651
rosa_laevigata	RLG00000015736 RLG00000015737 RLG00000015738 RLG00000015739 RLG00000015742
rosa_multiflora	Rmu_co8177264.1_g000001 Rmu_sc0003133.1_g000024 Rmu_sc0017765.1_g000004 Rmu_ssc0000355.1_g000018 Rmu_ssc0000355.1_g000019 Rmu_ssc0000355.1_g000021
rosa_roxburghii	Rroxscaffold_2G00121400 Rroxscaffold_2G00154820
rosa_rugosa	Rorug01G0465300 Rorug01G0465400 Rorug01G0465500 Rorug01G0465500 Rorug02G0241100
rosa_samantha	Rh2AG014500 Rh2AG014600 Rh2AG014700 Rh2AG014800 Rh2AG015100 Rh2AG015200 Rh2BG015000 Rh2CG015600 Rh2CG015700 Rh2CG015800 Rh2CG016200 Rh2DG016900 Rh2DG017100
rosa_wichuraiana	Rw2G001290 Rw2G001300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	131
AccII	CGCG	2 cut(s)	43, 103
AciI	CCGC	1 cut(s)	43
AclWI	GGATC	1 cut(s)	167
AfaI	GTAC	1 cut(s)	50
AfeI	AGCGCT	1 cut(s)	32
AflIII	ACRYGT	1 cut(s)	101
AgsI	TTSAA	1 cut(s)	80
AjnI	CCWGG	2 cut(s)	18, 183
AlwI	GGATC	1 cut(s)	167
Aor51HI	AGCGCT	1 cut(s)	32
AoxI	GGCC	1 cut(s)	16
AspLEI	GCGC	2 cut(s)	33, 43
AspS9I	GGNCC	1 cut(s)	16
BanI	GGYRCC	1 cut(s)	131
BceAI	ACGGC	1 cut(s)	145
BciT130I	CCWGG	2 cut(s)	20, 185
BfoI	RGCGCY	1 cut(s)	34
Bme1390I	CCNGG	2 cut(s)	20, 185
BmgT120I	GGNCC	1 cut(s)	16
BmiI	GGNNCC	1 cut(s)	133
BmrFI	CCNGG	2 cut(s)	20, 185
BplI	GAGNNNNNCTC	2 cut(s)	44, 76
BseBI	CCWGG	2 cut(s)	20, 185
BseGI	GGATG	1 cut(s)	180
Bsh1236I	CGCG	2 cut(s)	43, 103
BshFI	GGCC	1 cut(s)	18
BshNI	GGYRCC	1 cut(s)	131
BsnI	GGCC	1 cut(s)	18
Bsp143I	GATC	1 cut(s)	159
BspACI	CCGC	1 cut(s)	43
BspANI	GGCC	1 cut(s)	18
BspFNI	CGCG	2 cut(s)	43, 103
BspLI	GGNNCC	1 cut(s)	133
BspPI	GGATC	1 cut(s)	167
BspT107I	GGYRCC	1 cut(s)	131
BssMI	GATC	1 cut(s)	159
Bst2UI	CCWGG	2 cut(s)	20, 185
Bst4CI	ACNGT	1 cut(s)	136
BstC8I	GCNNGC	1 cut(s)	105
BstF5I	GGATG	1 cut(s)	180
BstFNI	CGCG	2 cut(s)	43, 103
BstH2I	RGCGCY	1 cut(s)	34
BstHHI	GCGC	2 cut(s)	33, 43
BstKTI	GATC	1 cut(s)	162
BstMBI	GATC	1 cut(s)	159
BstNI	CCWGG	2 cut(s)	20, 185
BstSCI	CCNGG	2 cut(s)	18, 183
BstUI	CGCG	2 cut(s)	43, 103
BsuRI	GGCC	1 cut(s)	18
BtgZI	GCGATG	1 cut(s)	175
BtsCI	GGATG	1 cut(s)	180
Cac8I	GCNNGC	1 cut(s)	105
CfoI	GCGC	2 cut(s)	33, 43
Cfr13I	GGNCC	1 cut(s)	16
Csp6I	GTAC	1 cut(s)	49
CviAII	CATG	1 cut(s)	37
CviJI	RGCY	1 cut(s)	18
CviKI_1	RGCY	1 cut(s)	18
CviQI	GTAC	1 cut(s)	49
DpnI	GATC	1 cut(s)	161
DpnII	GATC	1 cut(s)	159
Eco47III	AGCGCT	1 cut(s)	32
EcoO109I	RGGNCCY	1 cut(s)	16
EcoRII	CCWGG	2 cut(s)	18, 183
FaeI	CATG	1 cut(s)	40
FaiI	YATR	1 cut(s)	38
FatI	CATG	1 cut(s)	36
FokI	GGATG	1 cut(s)	167
GlaI	GCGC	2 cut(s)	32, 42
HaeII	RGCGCY	1 cut(s)	34
HaeIII	GGCC	1 cut(s)	18
HhaI	GCGC	2 cut(s)	33, 43
Hin1II	CATG	1 cut(s)	40
Hin6I	GCGC	2 cut(s)	31, 41
HinP1I	GCGC	2 cut(s)	31, 41
Hpy188I	TCNGA	1 cut(s)	120
Hpy99I	CGWCG	3 cut(s)	73, 131, 167
HpyAV	CCTTC	1 cut(s)	7
HpyCH4III	ACNGT	1 cut(s)	136
Hsp92II	CATG	1 cut(s)	40
HspAI	GCGC	2 cut(s)	31, 41
Kzo9I	GATC	1 cut(s)	159
LpnPI	CCDG	3 cut(s)	5, 32, 170
MalI	GATC	1 cut(s)	161
MboI	GATC	1 cut(s)	159
MluI	ACGCGT	1 cut(s)	101
MnlI	CCTC	1 cut(s)	70
MspR9I	CCNGG	2 cut(s)	20, 185
MvaI	CCWGG	2 cut(s)	20, 185
MvnI	CGCG	2 cut(s)	43, 103
NdeII	GATC	1 cut(s)	159
NlaIII	CATG	1 cut(s)	40
NlaIV	GGNNCC	1 cut(s)	133
PcsI	WCGNNNNNNNCGW	1 cut(s)	132
PfoI	TCCNGGA	1 cut(s)	183
Psp6I	CCWGG	2 cut(s)	18, 183
PspGI	CCWGG	2 cut(s)	18, 183
PspN4I	GGNNCC	1 cut(s)	133
PspPI	GGNCC	1 cut(s)	16
RsaI	GTAC	1 cut(s)	50
RsaNI	GTAC	1 cut(s)	49
Sau3AI	GATC	1 cut(s)	159
Sau96I	GGNCC	1 cut(s)	16
ScrFI	CCNGG	2 cut(s)	20, 185
SetI	ASST	1 cut(s)	113
SsiI	CCGC	1 cut(s)	43
StyD4I	CCNGG	2 cut(s)	18, 183
TaaI	ACNGT	1 cut(s)	136
TaqI	TCGA	1 cut(s)	162
TspDTI	ATGAA	1 cut(s)	169
TspGWI	ACGGA	1 cut(s)	57

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.