Rh2AG014600

A Receptor for Ubiquitination Targets

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0001674
Physical Location & Seq
Reverse (-)
1146003 .. 1147503
1501 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG014600.1

Sequence Viewer

Length: 1410 bp
ATGGCGCGCATGAGGGAAACTGCAATAATACCTGAAGATATTATAGTGGAAATTGTGACGAGGTTGCCGATCAAACCCGTAGGGCGATGCAGGTGCGTTTGTAAACGGTGGCGCTCTCTATTCTCCGACCCAAAGTTTGCCAAATCGCACATAAAATCTGCTTCTGAGCGGCAAACCCTCTGTCAGAGACTTGTTCTCGTCAGACATGAATGCAAATCGCTAGAGTTGGAGTTGGGGGATCTAAAGGAGCTTAACAATTCTTCGCTCAGAGTCGGACAGCTGAACACCCCATTCAAGAAACCGGGCCGTGCTCTCCGCTTTTTAGGTTCTTGCAATGGGTTAGTAGCCTGTTATAACTGTTGTAAATATCCAAACATTAATTGTATGGATCCTAAATGTGGTTCATCCTTGTTTATCTGGAACCCATCAACCGGATTCTACAAAGAAATACCTGAGAAAGGCTTTGATCTTCCATGGGGGGTTTCCACATGTGGCTTTGGCCATGTCTCTGACACCGACGACTATAAAGTTGTTTTAAGAAGGAATTTGCCGAGTTTGGGAGAGGTTAGCATCTTCTCGTTGAGAGCTCAAACGTGGAAATCAATTAAATCCCCTATGAACGGCACGCTGCAACGGAAAGGGCTGCTTTTTAGAGAGGCACTTCATTGGCTAGCGCTTGACAGATACCCCCCTGCTTCTCGTGAGTATTTAGGTATTCCAATAGCTCTCTTTGCCTTTGATTTGGCGAAGGAGCGATTCCGGAAAATGCAGGTGCCTAGTATTCTGAACGTCACTCATAAATGCCATATGGGAGTTTCTTGTGAAGGATGCCTGTACATAATGCAGTATAATCGGCTGTTTGAGCATCAAGGGATATATTATGTTGTAGATTTTTGGGTCATGAGAGAATACGGAAACAGTGATTCCTGGACTAGATCCCTCAGCCTAAAGTTTTTCGATAAGTGGATCTATATGCTTGAACCGATCTTGCTTATCGAAACTTGTGCAGTTGTGATGAAGAGGTCGAAAAAGTTTGATCAAGACAAAGAAGAGACGCCTGACATATATATGGTTCGTGATCATAATAAACAAGAGAACGCCAGCATGTATATTCTTTACAGTAATCCAATAGACATGATTGTATATGAAGAGAGTCTTAGTGAGTATCATGGAGTGGAAAGAGAAGATGATCAAAAGCTGGAGTGGAAAGAGAAGAAGATCAAAAGCTCTAATCCTCTACGTACCACAAGGCTTGATAACGCTGAAATGAAGAGGACCCACTTGCCTAGTGATACCAGTTGTTTTGTTTATTTATGCTCTAGTCTTTGTAGTAGAATCAAGAGTGTTTTTGTGAATGCAACTTCTAAGACCCGTAGTTTAAACTTTAAAGGTGTTGAAAAAATAGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

469

Amino Acids

54.32

Weight (kDa)

9.07

Isoelectric Point (pI)

42.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 10 - 46 5.5e-10 F-box domain
F-box-like PF12937 10 - 45 1.7e-07 F-box-like
FBA_3 PF08268 103 - 313 6.4e-09 F-box associated beta propeller domain
FBA_1 PF07734 130 - 365 9.8e-14 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 354
AarI CACCTGC 2 cut(s) 81, 760
Acc36I ACCTGC 2 cut(s) 81, 760
AccB1I GGYRCC 1 cut(s) 772
AccBSI CCGCTC 1 cut(s) 169
AccII CGCG 1 cut(s) 7
AccIII TCCGGA 1 cut(s) 759
AciI CCGC 2 cut(s) 169, 316
AclWI GGATC 5 cut(s) 246, 383, 396, 930, 974
AcoI YGGCCR 1 cut(s) 499
AcsI RAATTY 1 cut(s) 544
AcuI CTGAAG 1 cut(s) 54
AcyI GRCGYC 1 cut(s) 1055
AfaI GTAC 2 cut(s) 836, 1243
AfeI AGCGCT 1 cut(s) 675
AfiI CCNNNNNNNGG 5 cut(s) 398, 431, 458, 557, 620
AflIII ACRYGT 1 cut(s) 488
AgsI TTSAA 3 cut(s) 295, 980, 1397
AjnI CCWGG 1 cut(s) 926
AluBI AGCT 7 cut(s) 250, 280, 587, 725, 1198, 1227, 1406
AluI AGCT 7 cut(s) 250, 280, 587, 725, 1198, 1227, 1406
Alw21I GWGCWC 2 cut(s) 313, 589
Alw26I GTCTC 3 cut(s) 181, 511, 1046
AlwI GGATC 5 cut(s) 246, 383, 396, 930, 974
Aor13HI TCCGGA 1 cut(s) 759
Aor51HI AGCGCT 1 cut(s) 675
AoxI GGCC 2 cut(s) 304, 499
ApeKI GCWGC 2 cut(s) 628, 643
ApoI RAATTY 1 cut(s) 544
ArsI GACNNNNNNTTYG 4 cut(s) 119, 151, 166, 198
AseI ATTAAT 1 cut(s) 378
AspLEI GCGC 4 cut(s) 7, 9, 114, 676
AspS9I GGNCC 2 cut(s) 304, 1275
AsuC2I CCSGG 1 cut(s) 303
AsuNHI GCTAGC 1 cut(s) 670
AvaII GGWCC 1 cut(s) 1275
BalI TGGCCA 1 cut(s) 501
BamHI GGATCC 1 cut(s) 388
BanI GGYRCC 1 cut(s) 772
BanII GRGCYC 1 cut(s) 589
BauI CACGAG 1 cut(s) 699
Bbv12I GWGCWC 2 cut(s) 313, 589
BbvCI CCTCAGC 1 cut(s) 941
BbvI GCAGC 2 cut(s) 615, 630
BccI CCATC 1 cut(s) 433
BceAI ACGGC 2 cut(s) 291, 637
BcgI CGANNNNNNTGC 6 cut(s) 75, 109, 833, 867, 986, 1020
BciT130I CCWGG 1 cut(s) 928
BclI TGATCA 3 cut(s) 1036, 1078, 1189
BcnI CCSGG 1 cut(s) 303
BcoDI GTCTC 3 cut(s) 181, 511, 1046
BfaI CTAG 6 cut(s) 221, 671, 777, 933, 1287, 1320
BfoI RGCGCY 2 cut(s) 115, 677
BfuAI ACCTGC 2 cut(s) 81, 760
BisI GCNGC 3 cut(s) 170, 629, 644
BlsI GCNGC 3 cut(s) 171, 630, 645
Bme1390I CCNGG 2 cut(s) 303, 928
Bme18I GGWCC 1 cut(s) 1275
BmgT120I GGNCC 2 cut(s) 304, 1275
BmiI GGNNCC 4 cut(s) 390, 422, 774, 1277
BmrFI CCNGG 2 cut(s) 303, 928
BmsI GCATC 4 cut(s) 77, 579, 818, 874
BmtI GCTAGC 1 cut(s) 674
BpmI CTGGAG 1 cut(s) 1220
Bpu10I CCTNAGC 1 cut(s) 941
BpuMI CCSGG 1 cut(s) 303
BsaAI YACGTR 1 cut(s) 1241
BsaHI GRCGYC 1 cut(s) 1055
BsaJI CCNNGG 1 cut(s) 473
BsaWI WCCGGW 2 cut(s) 431, 759
Bsc4I CCNNNNNNNGG 5 cut(s) 398, 431, 458, 557, 620
Bse1I ACTGG 1 cut(s) 1296
Bse3DI GCAATG 1 cut(s) 340
BseAI TCCGGA 1 cut(s) 759
BseBI CCWGG 1 cut(s) 928
BseDI CCNNGG 1 cut(s) 473
BseGI GGATG 2 cut(s) 404, 833
BseLI CCNNNNNNNGG 5 cut(s) 398, 431, 458, 557, 620
BseMI GCAATG 1 cut(s) 340
BseMII CTCAG 4 cut(s) 156, 280, 444, 955
BseNI ACTGG 1 cut(s) 1296
BsePI GCGCGC 1 cut(s) 5
BseXI GCAGC 2 cut(s) 615, 630
BsgI GTGCAG 1 cut(s) 1026
Bsh1236I CGCG 1 cut(s) 7
BshFI GGCC 2 cut(s) 306, 501
BshNI GGYRCC 1 cut(s) 772
BsiHKAI GWGCWC 2 cut(s) 313, 589
BsiSI CCGG 3 cut(s) 302, 432, 760
BslI CCNNNNNNNGG 5 cut(s) 398, 431, 458, 557, 620
BsmAI GTCTC 3 cut(s) 181, 511, 1046
BsmBI CGTCTC 1 cut(s) 1046
BsmI GAATGC 2 cut(s) 215, 1360
BsnI GGCC 2 cut(s) 306, 501
Bsp1286I GDGCHC 2 cut(s) 313, 589
Bsp13I TCCGGA 1 cut(s) 759
Bsp1407I TGTACA 1 cut(s) 834
Bsp19I CCATGG 1 cut(s) 473
BspACI CCGC 2 cut(s) 169, 316
BspANI GGCC 2 cut(s) 306, 501
BspCNI CTCAG 4 cut(s) 157, 279, 445, 954
BspEI TCCGGA 1 cut(s) 759
BspFNI CGCG 1 cut(s) 7
BspHI TCATGA 1 cut(s) 900
BspLI GGNNCC 4 cut(s) 390, 422, 774, 1277
BspMI ACCTGC 2 cut(s) 81, 760
BspOI GCTAGC 1 cut(s) 674
BspPI GGATC 5 cut(s) 246, 383, 396, 930, 974
BspT107I GGYRCC 1 cut(s) 772
BsrBI CCGCTC 1 cut(s) 169
BsrDI GCAATG 1 cut(s) 340
BsrGI TGTACA 1 cut(s) 834
BsrI ACTGG 1 cut(s) 1296
BssECI CCNNGG 1 cut(s) 473
BssHII GCGCGC 1 cut(s) 5
BssNI GRCGYC 1 cut(s) 1055
BssSI CACGAG 1 cut(s) 699
BssT1I CCWWGG 1 cut(s) 473
Bst2BI CACGAG 1 cut(s) 699
Bst2UI CCWGG 1 cut(s) 928
Bst4CI ACNGT 4 cut(s) 108, 359, 920, 1121
Bst6I CTCTTC 4 cut(s) 1013, 1044, 1143, 1265
BstACI GRCGYC 1 cut(s) 1055
BstAUI TGTACA 1 cut(s) 834
BstBAI YACGTR 1 cut(s) 1241
BstC8I GCNNGC 4 cut(s) 7, 626, 672, 1102
BstDEI CTNAG 7 cut(s) 165, 266, 453, 941, 1157, 1365, 1407
BstDSI CCRYGG 1 cut(s) 473
BstENI CCTNNNNNAGG 1 cut(s) 456
BstF5I GGATG 2 cut(s) 404, 833
BstFNI CGCG 1 cut(s) 7
BstH2I RGCGCY 2 cut(s) 115, 677
BstHHI GCGC 4 cut(s) 7, 9, 114, 676
BstMAI GTCTC 3 cut(s) 181, 511, 1046
BstMWI GCNNNNNNNGC 2 cut(s) 731, 862
BstNI CCWGG 1 cut(s) 928
BstNSI RCATGY 2 cut(s) 492, 1108
BstSCI CCNGG 2 cut(s) 301, 926
BstSNI TACGTA 1 cut(s) 1241
BstUI CGCG 1 cut(s) 7
BstV1I GCAGC 2 cut(s) 615, 630
BstX2I RGATCY 4 cut(s) 238, 388, 935, 966
BstYI RGATCY 4 cut(s) 238, 388, 935, 966
BsuRI GGCC 2 cut(s) 306, 501
BtgI CCRYGG 1 cut(s) 473
BtgZI GCGATG 1 cut(s) 100
BtsCI GGATG 2 cut(s) 404, 833
BtsIMutI CAGTG 1 cut(s) 925
BveI ACCTGC 2 cut(s) 81, 760
Cac8I GCNNGC 4 cut(s) 7, 626, 672, 1102
CciI TCATGA 1 cut(s) 900
CfoI GCGC 4 cut(s) 7, 9, 114, 676
Cfr13I GGNCC 2 cut(s) 304, 1275
CseI GACGC 1 cut(s) 1063
Csp6I GTAC 2 cut(s) 835, 1242
CspCI CAANNNNNGTGG 2 cut(s) 1234, 1269
CviAII CATG 9 cut(s) 10, 206, 474, 489, 503, 901, 1105, 1135, 1169
CviQI GTAC 2 cut(s) 835, 1242
DdeI CTNAG 7 cut(s) 165, 266, 453, 941, 1157, 1365, 1407
DraI TTTAAA 2 cut(s) 1380, 1387
EaeI YGGCCR 1 cut(s) 499
Eam1104I CTCTTC 4 cut(s) 1013, 1044, 1143, 1265
EarI CTCTTC 4 cut(s) 1013, 1044, 1143, 1265
Ecl136II GAGCTC 1 cut(s) 587
Eco105I TACGTA 1 cut(s) 1241
Eco130I CCWWGG 1 cut(s) 473
Eco24I GRGCYC 1 cut(s) 589
Eco47I GGWCC 1 cut(s) 1275
Eco47III AGCGCT 1 cut(s) 675
Eco53kI GAGCTC 1 cut(s) 587
Eco57I CTGAAG 1 cut(s) 54
EcoICRI GAGCTC 1 cut(s) 587
EcoNI CCTNNNNNAGG 1 cut(s) 456
EcoO109I RGGNCCY 1 cut(s) 1275
EcoRII CCWGG 1 cut(s) 926
EcoT14I CCWWGG 1 cut(s) 473
EcoT38I GRGCYC 1 cut(s) 589
ErhI CCWWGG 1 cut(s) 473
Esp3I CGTCTC 1 cut(s) 1046
FaeI CATG 9 cut(s) 13, 209, 477, 492, 506, 904, 1108, 1138, 1172
FalI AAGNNNNNCTT 4 cut(s) 630, 662, 1140, 1172
FatI CATG 9 cut(s) 9, 205, 473, 488, 502, 900, 1104, 1134, 1168
FauNDI CATATG 1 cut(s) 807
FbaI TGATCA 3 cut(s) 1036, 1078, 1189
Fnu4HI GCNGC 3 cut(s) 170, 629, 644
FokI GGATG 2 cut(s) 391, 840
FriOI GRGCYC 1 cut(s) 589
Fsp4HI GCNGC 3 cut(s) 170, 629, 644
FspBI CTAG 6 cut(s) 221, 671, 777, 933, 1287, 1320
GlaI GCGC 4 cut(s) 6, 8, 113, 675
GluI GCNGC 3 cut(s) 170, 629, 644
GsuI CTGGAG 1 cut(s) 1220
HaeII RGCGCY 2 cut(s) 115, 677
HaeIII GGCC 2 cut(s) 306, 501
HapII CCGG 3 cut(s) 302, 432, 760
HgaI GACGC 1 cut(s) 1063
HhaI GCGC 4 cut(s) 7, 9, 114, 676
Hin1I GRCGYC 1 cut(s) 1055
Hin1II CATG 9 cut(s) 13, 209, 477, 492, 506, 904, 1108, 1138, 1172
Hin6I GCGC 4 cut(s) 5, 7, 112, 674
HinP1I GCGC 4 cut(s) 5, 7, 112, 674
HinfI GANTC 6 cut(s) 270, 435, 756, 923, 1153, 1335
HpaII CCGG 3 cut(s) 302, 432, 760
Hpy166II GTNNAC 1 cut(s) 104
Hpy188I TCNGA 8 cut(s) 127, 166, 186, 203, 269, 275, 511, 786
Hpy188III TCNNGA 8 cut(s) 295, 418, 701, 760, 901, 1040, 1076, 1339
Hpy8I GTNNAC 1 cut(s) 104
Hpy99I CGWCG 1 cut(s) 521
HpyAV CCTTC 3 cut(s) 534, 742, 818
HpyCH4III ACNGT 4 cut(s) 108, 359, 920, 1121
HpyCH4IV ACGT 3 cut(s) 593, 789, 1240
HpyCH4V TGCA 9 cut(s) 23, 90, 213, 333, 631, 769, 844, 1007, 1358
HpyF10VI GCNNNNNNNGC 2 cut(s) 731, 862
HpyF3I CTNAG 7 cut(s) 165, 266, 453, 941, 1157, 1365, 1407
HpySE526I ACGT 3 cut(s) 593, 789, 1240
Hsp92I GRCGYC 1 cut(s) 1055
Hsp92II CATG 9 cut(s) 13, 209, 477, 492, 506, 904, 1108, 1138, 1172
HspAI GCGC 4 cut(s) 5, 7, 112, 674
Kpn2I TCCGGA 1 cut(s) 759
Ksp22I TGATCA 3 cut(s) 1036, 1078, 1189
LmnI GCTCC 2 cut(s) 247, 751
Lsp1109I GCAGC 2 cut(s) 615, 630
LweI GCATC 4 cut(s) 77, 579, 818, 874
MaeI CTAG 6 cut(s) 221, 671, 777, 933, 1287, 1320
MaeII ACGT 3 cut(s) 593, 789, 1240
MaeIII GTNAC 2 cut(s) 55, 790
MbiI CCGCTC 1 cut(s) 169
MflI RGATCY 4 cut(s) 238, 388, 935, 966
MhlI GDGCHC 2 cut(s) 313, 589
MlsI TGGCCA 1 cut(s) 501
MluCI AATT 5 cut(s) 51, 256, 379, 544, 603
MluNI TGGCCA 1 cut(s) 501
MlyI GAGTC 2 cut(s) 279, 1162
MmeI TCCRAC 3 cut(s) 150, 207, 253
MnlI CCTC 9 cut(s) 6, 54, 188, 556, 649, 950, 1014, 1245, 1266
Mox20I TGGCCA 1 cut(s) 501
MroI TCCGGA 1 cut(s) 759
MscI TGGCCA 1 cut(s) 501
MseI TTAA 6 cut(s) 252, 378, 536, 606, 1379, 1386
MslI CAYNNNNRTG 1 cut(s) 1067
Msp20I TGGCCA 1 cut(s) 501
MspA1I CMGCKG 1 cut(s) 280
MspI CCGG 3 cut(s) 302, 432, 760
MspR9I CCNGG 2 cut(s) 303, 928
MssI GTTTAAAC 1 cut(s) 1380
Mva1269I GAATGC 2 cut(s) 215, 1360
MvaI CCWGG 1 cut(s) 928
MvnI CGCG 1 cut(s) 7
MwoI GCNNNNNNNGC 2 cut(s) 731, 862
NciI CCSGG 1 cut(s) 303
NcoI CCATGG 1 cut(s) 473
NdeI CATATG 1 cut(s) 807
NheI GCTAGC 1 cut(s) 670
NlaIII CATG 9 cut(s) 13, 209, 477, 492, 506, 904, 1108, 1138, 1172
NlaIV GGNNCC 4 cut(s) 390, 422, 774, 1277
NmeAIII GCCGAG 1 cut(s) 576
NmuCI GTSAC 2 cut(s) 55, 790
NspI RCATGY 2 cut(s) 492, 1108
PagI TCATGA 1 cut(s) 900
PaqCI CACCTGC 2 cut(s) 81, 760
PauI GCGCGC 1 cut(s) 5
PciI ACATGT 1 cut(s) 488
PcsI WCGNNNNNNNCGW 1 cut(s) 65
PctI GAATGC 2 cut(s) 215, 1360
PfeI GAWTC 4 cut(s) 435, 756, 923, 1335
PfoI TCCNGGA 1 cut(s) 926
PkrI GCNGC 3 cut(s) 171, 630, 645
PleI GAGTC 2 cut(s) 278, 1161
PmeI GTTTAAAC 1 cut(s) 1380
PpsI GAGTC 2 cut(s) 278, 1161
Ppu21I YACGTR 1 cut(s) 1241
PpuMI RGGWCCY 1 cut(s) 1275
PscI ACATGT 1 cut(s) 488
PshBI ATTAAT 1 cut(s) 378
PsiI TTATAA 1 cut(s) 354
Psp124BI GAGCTC 1 cut(s) 589
Psp5II RGGWCCY 1 cut(s) 1275
Psp6I CCWGG 1 cut(s) 926
PspGI CCWGG 1 cut(s) 926
PspN4I GGNNCC 4 cut(s) 390, 422, 774, 1277
PspPI GGNCC 2 cut(s) 304, 1275
PspPPI RGGWCCY 1 cut(s) 1275
PsuI RGATCY 4 cut(s) 238, 388, 935, 966
PteI GCGCGC 1 cut(s) 5
PvuII CAGCTG 1 cut(s) 280
RsaI GTAC 2 cut(s) 836, 1243
RsaNI GTAC 2 cut(s) 835, 1242
RseI CAYNNNNRTG 1 cut(s) 1067
SacI GAGCTC 1 cut(s) 589
SaqAI TTAA 6 cut(s) 252, 378, 536, 606, 1379, 1386
SatI GCNGC 3 cut(s) 170, 629, 644
Sau96I GGNCC 2 cut(s) 304, 1275
SchI GAGTC 2 cut(s) 279, 1162
ScrFI CCNGG 2 cut(s) 303, 928
SduI GDGCHC 2 cut(s) 313, 589
SfaNI GCATC 4 cut(s) 77, 579, 818, 874
SinI GGWCC 1 cut(s) 1275
SmiMI CAYNNNNRTG 1 cut(s) 1067
SnaBI TACGTA 1 cut(s) 1241
Sse9I AATT 5 cut(s) 51, 256, 379, 544, 603
SsiI CCGC 2 cut(s) 169, 316
SspMI CTAG 6 cut(s) 221, 671, 777, 933, 1287, 1320
SstI GAGCTC 1 cut(s) 589
StyD4I CCNGG 2 cut(s) 301, 926
StyI CCWWGG 1 cut(s) 473
TaaI ACNGT 4 cut(s) 108, 359, 920, 1121
TaiI ACGT 3 cut(s) 596, 792, 1243
TaqI TCGA 3 cut(s) 957, 996, 1025
TasI AATT 5 cut(s) 51, 256, 379, 544, 603
TatI WGTACW 1 cut(s) 834
TauI GCSGC 1 cut(s) 172
TfiI GAWTC 4 cut(s) 435, 756, 923, 1335
Tru1I TTAA 6 cut(s) 252, 378, 536, 606, 1379, 1386
Tru9I TTAA 6 cut(s) 252, 378, 536, 606, 1379, 1386
TscAI CASTG 1 cut(s) 925
TseFI GTSAC 2 cut(s) 55, 790
TseI GCWGC 2 cut(s) 628, 643
Tsp45I GTSAC 2 cut(s) 55, 790
TspDTI ATGAA 7 cut(s) 222, 393, 632, 653, 1031, 1161, 1283
TspGWI ACGGA 2 cut(s) 649, 927
TspRI CASTG 1 cut(s) 925
VpaK11BI GGWCC 1 cut(s) 1275
VspI ATTAAT 1 cut(s) 378
XagI CCTNNNNNAGG 1 cut(s) 456
XapI RAATTY 1 cut(s) 544
XceI RCATGY 2 cut(s) 492, 1108
XspI CTAG 6 cut(s) 221, 671, 777, 933, 1287, 1320
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.