Rh2AG014800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0001674
Physical Location & Seq
Forward (+)
1151186 .. 1151602
417 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG014800.1

Sequence Viewer

Length: 417 bp
ATGTATGATAGGCGTCTGGGAGTTTCTTGTGAAGGATGCTTGTATATAATGTGCTTTCCAAAATCTGGTTACCGTTATCGTGATGCTATTCGTGTTGAATTTTGGGTCATGAGAGAATATGGCAACATTGGCAACATTTATTCTTGGAATATAATTAGTATAAGGATTCCCAATGAGTTTACTCGGTATAATCTTGAACCAATCTTGCTCATGGAAACTTGTGCAGTTGTGATGAACAGGTCGAAGAAGAGTGGCCTACTGGTTTCACAGCAGGGGAGTAACATCCGGAGCAACGATCTAGAGGACATATACATGATTCACCATCATACTCAAAAAGAGAACCTGAAAGTGTACATTGTTGAGACTGATCCACCAGATATGATTGTATATGAAGAGAGTCTATTTTCTCTTTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

138

Amino Acids

16.29

Weight (kDa)

5.91

Isoelectric Point (pI)

45.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 65
AccIII TCCGGA 1 cut(s) 285
AclWI GGATC 1 cut(s) 362
AcsI RAATTY 1 cut(s) 98
AcyI GRCGYC 1 cut(s) 13
AfaI GTAC 1 cut(s) 353
AfiI CCNNNNNNNGG 1 cut(s) 65
AgsI TTSAA 2 cut(s) 98, 197
Alw26I GTCTC 1 cut(s) 356
AlwI GGATC 1 cut(s) 362
Aor13HI TCCGGA 1 cut(s) 285
AoxI GGCC 1 cut(s) 253
ApoI RAATTY 1 cut(s) 98
AsuHPI GGTGA 1 cut(s) 311
BccI CCATC 1 cut(s) 330
BcoDI GTCTC 1 cut(s) 356
BfaI CTAG 1 cut(s) 299
BmsI GCATC 2 cut(s) 26, 73
BsaHI GRCGYC 1 cut(s) 13
BsaWI WCCGGW 1 cut(s) 285
Bsc4I CCNNNNNNNGG 1 cut(s) 65
Bse1I ACTGG 1 cut(s) 264
BseAI TCCGGA 1 cut(s) 285
BseGI GGATG 2 cut(s) 41, 282
BseLI CCNNNNNNNGG 1 cut(s) 65
BseNI ACTGG 1 cut(s) 264
BsgI GTGCAG 1 cut(s) 243
BshFI GGCC 1 cut(s) 255
BsiSI CCGG 1 cut(s) 286
BslI CCNNNNNNNGG 1 cut(s) 65
BsmAI GTCTC 1 cut(s) 356
BsnI GGCC 1 cut(s) 255
Bsp13I TCCGGA 1 cut(s) 285
Bsp1407I TGTACA 1 cut(s) 351
Bsp143I GATC 2 cut(s) 295, 367
BspANI GGCC 1 cut(s) 255
BspEI TCCGGA 1 cut(s) 285
BspHI TCATGA 1 cut(s) 108
BspPI GGATC 1 cut(s) 362
BsrGI TGTACA 1 cut(s) 351
BsrI ACTGG 1 cut(s) 264
BssMI GATC 2 cut(s) 295, 367
BssNI GRCGYC 1 cut(s) 13
Bst4CI ACNGT 1 cut(s) 74
Bst6I CTCTTC 2 cut(s) 242, 387
BstACI GRCGYC 1 cut(s) 13
BstAUI TGTACA 1 cut(s) 351
BstEII GGTNACC 1 cut(s) 68
BstF5I GGATG 2 cut(s) 41, 282
BstKTI GATC 2 cut(s) 298, 370
BstMAI GTCTC 1 cut(s) 356
BstMBI GATC 2 cut(s) 295, 367
BstMWI GCNNNNNNNGC 1 cut(s) 129
BstPI GGTNACC 1 cut(s) 68
BsuRI GGCC 1 cut(s) 255
BtsCI GGATG 2 cut(s) 41, 282
CciI TCATGA 1 cut(s) 108
CseI GACGC 1 cut(s) 2
Csp6I GTAC 1 cut(s) 352
CviAII CATG 3 cut(s) 109, 211, 313
CviJI RGCY 1 cut(s) 255
CviKI_1 RGCY 1 cut(s) 255
CviQI GTAC 1 cut(s) 352
DpnI GATC 2 cut(s) 297, 369
DpnII GATC 2 cut(s) 295, 367
Eam1104I CTCTTC 2 cut(s) 242, 387
EarI CTCTTC 2 cut(s) 242, 387
Eco91I GGTNACC 1 cut(s) 68
EcoO65I GGTNACC 1 cut(s) 68
FaeI CATG 3 cut(s) 112, 214, 316
FatI CATG 3 cut(s) 108, 210, 312
FokI GGATG 2 cut(s) 48, 269
FspBI CTAG 1 cut(s) 299
HaeIII GGCC 1 cut(s) 255
HapII CCGG 1 cut(s) 286
HgaI GACGC 1 cut(s) 2
Hin1I GRCGYC 1 cut(s) 13
Hin1II CATG 3 cut(s) 112, 214, 316
HinfI GANTC 3 cut(s) 166, 316, 397
HpaII CCGG 1 cut(s) 286
HphI GGTGA 1 cut(s) 311
Hpy166II GTNNAC 2 cut(s) 180, 352
Hpy188III TCNNGA 5 cut(s) 80, 109, 194, 286, 299
Hpy8I GTNNAC 2 cut(s) 180, 352
HpyAV CCTTC 1 cut(s) 26
HpyCH4III ACNGT 1 cut(s) 74
HpyCH4V TGCA 1 cut(s) 224
HpyF10VI GCNNNNNNNGC 1 cut(s) 129
Hsp92I GRCGYC 1 cut(s) 13
Hsp92II CATG 3 cut(s) 112, 214, 316
Kpn2I TCCGGA 1 cut(s) 285
Kzo9I GATC 2 cut(s) 295, 367
LmnI GCTCC 1 cut(s) 288
LpnPI CCDG 8 cut(s) 2, 51, 223, 245, 257, 299, 356, 387
LweI GCATC 2 cut(s) 26, 73
MaeI CTAG 1 cut(s) 299
MaeIII GTNAC 2 cut(s) 68, 278
MalI GATC 2 cut(s) 297, 369
MboI GATC 2 cut(s) 295, 367
MboII GAAGA 3 cut(s) 256, 259, 404
MluCI AATT 2 cut(s) 98, 153
MlyI GAGTC 1 cut(s) 406
MnlI CCTC 1 cut(s) 295
MroI TCCGGA 1 cut(s) 285
MslI CAYNNNNRTG 1 cut(s) 311
MspI CCGG 1 cut(s) 286
MwoI GCNNNNNNNGC 1 cut(s) 129
NdeII GATC 2 cut(s) 295, 367
NlaIII CATG 3 cut(s) 112, 214, 316
PagI TCATGA 1 cut(s) 108
PfeI GAWTC 2 cut(s) 166, 316
PflMI CCANNNNNTGG 1 cut(s) 65
PleI GAGTC 1 cut(s) 405
PpsI GAGTC 1 cut(s) 405
PspEI GGTNACC 1 cut(s) 68
RsaI GTAC 1 cut(s) 353
RsaNI GTAC 1 cut(s) 352
RseI CAYNNNNRTG 1 cut(s) 311
Sau3AI GATC 2 cut(s) 295, 367
SchI GAGTC 1 cut(s) 406
SetI ASST 2 cut(s) 242, 345
SfaNI GCATC 2 cut(s) 26, 73
SmiMI CAYNNNNRTG 1 cut(s) 311
Sse9I AATT 2 cut(s) 98, 153
SspMI CTAG 1 cut(s) 299
TaaI ACNGT 1 cut(s) 74
TaqI TCGA 1 cut(s) 242
TasI AATT 2 cut(s) 98, 153
TatI WGTACW 1 cut(s) 351
TfiI GAWTC 2 cut(s) 166, 316
TspDTI ATGAA 2 cut(s) 248, 405
Van91I CCANNNNNTGG 1 cut(s) 65
XapI RAATTY 1 cut(s) 98
XbaI TCTAGA 1 cut(s) 298
XspI CTAG 1 cut(s) 299
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.