Rh2AG014500

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0001674
Physical Location & Seq
Reverse (-)
1129943 .. 1130275
333 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG014500.1

Sequence Viewer

Length: 333 bp
ATGGTCAAGAAGGCGCGGTGGGATTGTGGTAAGTTGGCCTATTATGAAATTGACTTTTGGGTCATGAGAGAGTATGGCAACAGTGATTCCTGGACTAGATCGTTCAGCGTAAGGATTCCCGGTCAGCCTGAGCGGAGGGACTGGTATCTTTTGCTTCAAGCAATTTCGGTTAGGGAAGCTAGTGCATTTGTGAGGAATAGATGTCCAAGGGAAGAAGAGAAGCTTGACATGTCTATAATTCATTATCGTAATGAAGAAGAGAACTCCGACATGTATATGCTTGACAATGATGCACAAGACATGGTTGTATATGAAGAGAGTCTGTTGTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1

Protein Analysis

110

Amino Acids

13.27

Weight (kDa)

4.81

Isoelectric Point (pI)

60.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 59
AccBSI CCGCTC 1 cut(s) 133
AccII CGCG 1 cut(s) 16
AciI CCGC 2 cut(s) 16, 133
AflIII ACRYGT 2 cut(s) 228, 270
AgsI TTSAA 1 cut(s) 158
AjnI CCWGG 1 cut(s) 89
AluBI AGCT 2 cut(s) 179, 223
AluI AGCT 2 cut(s) 179, 223
AoxI GGCC 1 cut(s) 36
AspLEI GCGC 1 cut(s) 16
AsuC2I CCSGG 1 cut(s) 120
BciT130I CCWGG 1 cut(s) 91
BcnI CCSGG 1 cut(s) 120
BfaI CTAG 2 cut(s) 96, 180
Bme1390I CCNGG 2 cut(s) 91, 120
BmrFI CCNGG 2 cut(s) 91, 120
BmsI GCATC 1 cut(s) 280
Bpu10I CCTNAGC 1 cut(s) 129
BpuMI CCSGG 1 cut(s) 120
BsaJI CCNNGG 1 cut(s) 206
Bse1I ACTGG 1 cut(s) 146
BseBI CCWGG 1 cut(s) 91
BseDI CCNNGG 1 cut(s) 206
BseMII CTCAG 1 cut(s) 120
BseNI ACTGG 1 cut(s) 146
Bsh1236I CGCG 1 cut(s) 16
BshFI GGCC 1 cut(s) 38
BsiSI CCGG 1 cut(s) 120
BslFI GGGAC 1 cut(s) 152
BsmFI GGGAC 1 cut(s) 152
BsnI GGCC 1 cut(s) 38
Bsp143I GATC 1 cut(s) 98
BspACI CCGC 2 cut(s) 16, 133
BspANI GGCC 1 cut(s) 38
BspCNI CTCAG 1 cut(s) 121
BspFNI CGCG 1 cut(s) 16
BspHI TCATGA 1 cut(s) 63
BsrBI CCGCTC 1 cut(s) 133
BsrI ACTGG 1 cut(s) 146
BssECI CCNNGG 1 cut(s) 206
BssMI GATC 1 cut(s) 98
BssT1I CCWWGG 1 cut(s) 206
Bst2UI CCWGG 1 cut(s) 91
Bst4CI ACNGT 1 cut(s) 83
Bst6I CTCTTC 3 cut(s) 210, 252, 309
BstDEI CTNAG 1 cut(s) 129
BstFNI CGCG 1 cut(s) 16
BstHHI GCGC 1 cut(s) 16
BstKTI GATC 1 cut(s) 101
BstMBI GATC 1 cut(s) 98
BstNI CCWGG 1 cut(s) 91
BstNSI RCATGY 2 cut(s) 232, 274
BstSCI CCNGG 2 cut(s) 89, 118
BstUI CGCG 1 cut(s) 16
BsuRI GGCC 1 cut(s) 38
BtsIMutI CAGTG 1 cut(s) 88
CciI TCATGA 1 cut(s) 63
CfoI GCGC 1 cut(s) 16
CviAII CATG 4 cut(s) 64, 229, 271, 301
CviJI RGCY 4 cut(s) 38, 127, 179, 223
CviKI_1 RGCY 4 cut(s) 38, 127, 179, 223
DdeI CTNAG 1 cut(s) 129
DpnI GATC 1 cut(s) 100
DpnII GATC 1 cut(s) 98
DrdI GACNNNNNNGTC 1 cut(s) 59
DseDI GACNNNNNNGTC 1 cut(s) 59
Eam1104I CTCTTC 3 cut(s) 210, 252, 309
EarI CTCTTC 3 cut(s) 210, 252, 309
Eco130I CCWWGG 1 cut(s) 206
EcoRII CCWGG 1 cut(s) 89
EcoT14I CCWWGG 1 cut(s) 206
ErhI CCWWGG 1 cut(s) 206
FaeI CATG 4 cut(s) 67, 232, 274, 304
FalI AAGNNNNNCTT 2 cut(s) 207, 239
FaqI GGGAC 1 cut(s) 152
FatI CATG 4 cut(s) 63, 228, 270, 300
FspBI CTAG 2 cut(s) 96, 180
GlaI GCGC 1 cut(s) 15
HaeIII GGCC 1 cut(s) 38
HapII CCGG 1 cut(s) 120
HhaI GCGC 1 cut(s) 16
Hin1II CATG 4 cut(s) 67, 232, 274, 304
Hin6I GCGC 1 cut(s) 14
HinP1I GCGC 1 cut(s) 14
HindIII AAGCTT 1 cut(s) 221
HinfI GANTC 3 cut(s) 86, 115, 319
HpaII CCGG 1 cut(s) 120
Hpy188I TCNGA 1 cut(s) 268
Hpy188III TCNNGA 2 cut(s) 7, 64
HpyAV CCTTC 1 cut(s) 4
HpyCH4III ACNGT 1 cut(s) 83
HpyCH4V TGCA 2 cut(s) 185, 293
HpyF3I CTNAG 1 cut(s) 129
Hsp92II CATG 4 cut(s) 67, 232, 274, 304
HspAI GCGC 1 cut(s) 14
Kzo9I GATC 1 cut(s) 98
LpnPI CCDG 5 cut(s) 76, 103, 127, 133, 141
LweI GCATC 1 cut(s) 280
MaeI CTAG 2 cut(s) 96, 180
MalI GATC 1 cut(s) 100
MbiI CCGCTC 1 cut(s) 133
MboI GATC 1 cut(s) 98
MboII GAAGA 5 cut(s) 224, 227, 266, 269, 326
MluCI AATT 3 cut(s) 48, 162, 237
MlyI GAGTC 1 cut(s) 328
MmeI TCCRAC 1 cut(s) 291
MnlI CCTC 2 cut(s) 129, 186
MseI TTAA 1 cut(s) 331
MslI CAYNNNNRTG 1 cut(s) 275
MspI CCGG 1 cut(s) 120
MspR9I CCNGG 2 cut(s) 91, 120
MvaI CCWGG 1 cut(s) 91
MvnI CGCG 1 cut(s) 16
NciI CCSGG 1 cut(s) 120
NdeII GATC 1 cut(s) 98
NlaIII CATG 4 cut(s) 67, 232, 274, 304
NspI RCATGY 2 cut(s) 232, 274
PagI TCATGA 1 cut(s) 63
PciI ACATGT 2 cut(s) 228, 270
PfeI GAWTC 2 cut(s) 86, 115
PfoI TCCNGGA 1 cut(s) 89
PleI GAGTC 1 cut(s) 327
PpsI GAGTC 1 cut(s) 327
PscI ACATGT 2 cut(s) 228, 270
Psp6I CCWGG 1 cut(s) 89
PspGI CCWGG 1 cut(s) 89
RseI CAYNNNNRTG 1 cut(s) 275
SaqAI TTAA 1 cut(s) 331
Sau3AI GATC 1 cut(s) 98
SchI GAGTC 1 cut(s) 328
ScrFI CCNGG 2 cut(s) 91, 120
SetI ASST 2 cut(s) 181, 225
SfaNI GCATC 1 cut(s) 280
SmiMI CAYNNNNRTG 1 cut(s) 275
Sse9I AATT 3 cut(s) 48, 162, 237
SsiI CCGC 2 cut(s) 16, 133
SspMI CTAG 2 cut(s) 96, 180
StyD4I CCNGG 2 cut(s) 89, 118
StyI CCWWGG 1 cut(s) 206
TaaI ACNGT 1 cut(s) 83
TasI AATT 3 cut(s) 48, 162, 237
TfiI GAWTC 2 cut(s) 86, 115
Tru1I TTAA 1 cut(s) 331
Tru9I TTAA 1 cut(s) 331
TscAI CASTG 1 cut(s) 88
TspDTI ATGAA 4 cut(s) 60, 230, 267, 327
TspRI CASTG 1 cut(s) 88
XceI RCATGY 2 cut(s) 232, 274
XspI CTAG 2 cut(s) 96, 180
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.