Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0001674

Physical Location & Seq

Genomic Coordinates Forward (+)

21628421 .. 21629788

Gene Structure 1368 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G259600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGGCGAAGAAAACCATGGATGTGGTGAAGGGTCTGGATTTGCAGAGGTACATGGGGCGCTGGTACGAGATAGCCTCATTTCCGTCAAGGTTTCAGCCCAAGAACGGAGAGAACACGAGGGCTACCTACACTCTGAGAGATGATGGGACTGTGAACGTGCTCAATGAGACTTGGTCTGATGGAAAAAGAAGCTCCATAGAGGGCACTGCATACAAGGCCGACCCCTCCAGCGAAGAGGCCAAACTCAAAGTGAAATTCTACGTTCCTCCATTTTTGCCCATCATCCCTGTTGTTGGTGATTACTGGGTTTTGTTTATTGATGAGGATTATCAGTATGCTTTGATTGGCCAGCCTAGCAGGAATTACCTTTGGATATTAAGCAGGCAGCCTCGTCTTGATGATGAAATTTACAACCAGCTAGTTCAAAGGGCCAAGGATGAGGAATATGATGTTAGCAAACTCCACAAGACACCGCAGAGTGAGACTCCACCGGAAGGAGAAGAAGGCCCCAAAGACACCAAGGGCATCTGGTGGTTCAAATCCCTCCTGGGAAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0009279 GO:0016020 GO:0019867 GO:0030312 GO:0030313 GO:0031975 GO:0044462 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipocalin_2

Protein Analysis

186

Amino Acids

21.46

Weight (kDa)

5.6

Isoelectric Point (pI)

54.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001674)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58070
fragaria_vesca	FvH4_1g01260 FvH4_1g02260 FvH4_2g05890 FvH4_7g32350
malus_domestica	MD02G1010500.v1.1 MD07G1286300.v1.1 MD15G1155500.v1.1
prunus_persica	Prupe.7G259600_v2.0.a1
pyrus_communis	pycom02g00940 pycom15g13950
rosa_chinensis	RchiOBHm_Chr2g0086031 RchiOBHm_Chr2g0086041 RchiOBHm_Chr2g0086051 RchiOBHm_Chr2g0086061 RchiOBHm_Chr2g0122651
rosa_laevigata	RLG00000015736 RLG00000015737 RLG00000015738 RLG00000015739 RLG00000015742
rosa_multiflora	Rmu_co8177264.1_g000001 Rmu_sc0003133.1_g000024 Rmu_sc0017765.1_g000004 Rmu_ssc0000355.1_g000018 Rmu_ssc0000355.1_g000019 Rmu_ssc0000355.1_g000021
rosa_roxburghii	Rroxscaffold_2G00121400 Rroxscaffold_2G00154820
rosa_rugosa	Rorug01G0465300 Rorug01G0465400 Rorug01G0465500 Rorug01G0465500 Rorug02G0241100
rosa_samantha	Rh2AG014500 Rh2AG014600 Rh2AG014700 Rh2AG014800 Rh2AG015100 Rh2AG015200 Rh2BG015000 Rh2CG015600 Rh2CG015700 Rh2CG015800 Rh2CG016200 Rh2DG016900 Rh2DG017100
rosa_wichuraiana	Rw2G001290 Rw2G001300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	473
AcoI	YGGCCR	1 cut(s)	346
AcsI	RAATTY	2 cut(s)	254, 405
AfaI	GTAC	2 cut(s)	50, 65
AfiI	CCNNNNNNNGG	3 cut(s)	104, 293, 494
AgsI	TTSAA	2 cut(s)	425, 538
AjnI	CCWGG	1 cut(s)	546
AluBI	AGCT	2 cut(s)	192, 418
AluI	AGCT	2 cut(s)	192, 418
Alw21I	GWGCWC	1 cut(s)	162
Alw26I	GTCTC	2 cut(s)	161, 476
AoxI	GGCC	5 cut(s)	216, 237, 346, 429, 505
ApeKI	GCWGC	1 cut(s)	385
ApoI	RAATTY	2 cut(s)	254, 405
AspLEI	GCGC	1 cut(s)	60
AspS9I	GGNCC	2 cut(s)	429, 506
AsuHPI	GGTGA	2 cut(s)	37, 308
BaeGI	GKGCMC	1 cut(s)	206
BalI	TGGCCA	1 cut(s)	348
BauI	CACGAG	1 cut(s)	115
Bbv12I	GWGCWC	1 cut(s)	162
BbvI	GCAGC	1 cut(s)	397
BccI	CCATC	3 cut(s)	137, 173, 287
BciT130I	CCWGG	1 cut(s)	548
BcoDI	GTCTC	2 cut(s)	161, 476
BfaI	CTAG	2 cut(s)	354, 419
BfoI	RGCGCY	1 cut(s)	61
BisI	GCNGC	1 cut(s)	386
BlsI	GCNGC	1 cut(s)	387
Bme1390I	CCNGG	1 cut(s)	548
BmgT120I	GGNCC	2 cut(s)	429, 506
BmiI	GGNNCC	1 cut(s)	508
BmrFI	CCNGG	1 cut(s)	548
BmrI	ACTGGG	1 cut(s)	313
BmsI	GCATC	1 cut(s)	534
BmuI	ACTGGG	1 cut(s)	313
BplI	GAGNNNNNCTC	4 cut(s)	59, 91, 469, 501
BpmI	CTGGAG	1 cut(s)	211
BsaJI	CCNNGG	4 cut(s)	15, 432, 519, 547
BsaWI	WCCGGW	1 cut(s)	490
Bsc4I	CCNNNNNNNGG	3 cut(s)	104, 293, 494
Bse1I	ACTGG	1 cut(s)	308
BseBI	CCWGG	1 cut(s)	548
BseDI	CCNNGG	4 cut(s)	15, 432, 519, 547
BseGI	GGATG	3 cut(s)	25, 282, 442
BseLI	CCNNNNNNNGG	3 cut(s)	104, 293, 494
BseMII	CTCAG	1 cut(s)	125
BseNI	ACTGG	1 cut(s)	308
BseSI	GKGCMC	1 cut(s)	206
BseXI	GCAGC	1 cut(s)	397
BshFI	GGCC	5 cut(s)	218, 239, 348, 431, 507
BsiHKAI	GWGCWC	1 cut(s)	162
BsiSI	CCGG	1 cut(s)	491
BslFI	GGGAC	1 cut(s)	160
BslI	CCNNNNNNNGG	3 cut(s)	104, 293, 494
BsmAI	GTCTC	2 cut(s)	161, 476
BsmFI	GGGAC	1 cut(s)	160
BsnI	GGCC	5 cut(s)	218, 239, 348, 431, 507
Bsp1286I	GDGCHC	2 cut(s)	162, 206
Bsp19I	CCATGG	1 cut(s)	15
BspACI	CCGC	1 cut(s)	473
BspANI	GGCC	5 cut(s)	218, 239, 348, 431, 507
BspCNI	CTCAG	1 cut(s)	126
BspLI	GGNNCC	1 cut(s)	508
BsrI	ACTGG	1 cut(s)	308
BssECI	CCNNGG	4 cut(s)	15, 432, 519, 547
BssSI	CACGAG	1 cut(s)	115
BssT1I	CCWWGG	3 cut(s)	15, 432, 519
Bst2BI	CACGAG	1 cut(s)	115
Bst2UI	CCWGG	1 cut(s)	548
Bst4CI	ACNGT	1 cut(s)	151
Bst6I	CTCTTC	1 cut(s)	228
BstC8I	GCNNGC	2 cut(s)	350, 383
BstDEI	CTNAG	1 cut(s)	134
BstDSI	CCRYGG	1 cut(s)	15
BstF5I	GGATG	3 cut(s)	25, 282, 442
BstH2I	RGCGCY	1 cut(s)	61
BstHHI	GCGC	1 cut(s)	60
BstMAI	GTCTC	2 cut(s)	161, 476
BstMWI	GCNNNNNNNGC	2 cut(s)	215, 354
BstNI	CCWGG	1 cut(s)	548
BstSCI	CCNGG	1 cut(s)	546
BstSLI	GKGCMC	1 cut(s)	206
BstV1I	GCAGC	1 cut(s)	397
BstXI	CCANNNNNNTGG	1 cut(s)	22
BsuRI	GGCC	5 cut(s)	218, 239, 348, 431, 507
BtgI	CCRYGG	1 cut(s)	15
BtsCI	GGATG	3 cut(s)	25, 282, 442
BtsI	GCAGTG	1 cut(s)	204
BtsIMutI	CAGTG	1 cut(s)	204
Cac8I	GCNNGC	2 cut(s)	350, 383
CfoI	GCGC	1 cut(s)	60
Cfr13I	GGNCC	2 cut(s)	429, 506
Csp6I	GTAC	2 cut(s)	49, 64
CviAII	CATG	2 cut(s)	16, 52
CviQI	GTAC	2 cut(s)	49, 64
DdeI	CTNAG	1 cut(s)	134
EaeI	YGGCCR	1 cut(s)	346
Eam1104I	CTCTTC	1 cut(s)	228
EarI	CTCTTC	1 cut(s)	228
Eco130I	CCWWGG	3 cut(s)	15, 432, 519
EcoO109I	RGGNCCY	1 cut(s)	506
EcoRII	CCWGG	1 cut(s)	546
EcoT14I	CCWWGG	3 cut(s)	15, 432, 519
ErhI	CCWWGG	3 cut(s)	15, 432, 519
FaeI	CATG	2 cut(s)	19, 55
FaiI	YATR	6 cut(s)	17, 53, 197, 211, 336, 447
FaqI	GGGAC	1 cut(s)	160
FatI	CATG	2 cut(s)	15, 51
Fnu4HI	GCNGC	1 cut(s)	386
FokI	GGATG	3 cut(s)	32, 269, 449
Fsp4HI	GCNGC	1 cut(s)	386
FspBI	CTAG	2 cut(s)	354, 419
GlaI	GCGC	1 cut(s)	59
GluI	GCNGC	1 cut(s)	386
GsuI	CTGGAG	1 cut(s)	211
HaeII	RGCGCY	1 cut(s)	61
HaeIII	GGCC	5 cut(s)	218, 239, 348, 431, 507
HapII	CCGG	1 cut(s)	491
HhaI	GCGC	1 cut(s)	60
Hin1II	CATG	2 cut(s)	19, 55
Hin6I	GCGC	1 cut(s)	58
HinP1I	GCGC	1 cut(s)	58
HinfI	GANTC	1 cut(s)	484
HpaII	CCGG	1 cut(s)	491
HphI	GGTGA	2 cut(s)	37, 308
Hpy166II	GTNNAC	1 cut(s)	154
Hpy188I	TCNGA	2 cut(s)	135, 178
Hpy188III	TCNNGA	2 cut(s)	35, 395
Hpy8I	GTNNAC	1 cut(s)	154
HpyAV	CCTTC	3 cut(s)	22, 488, 497
HpyCH4III	ACNGT	1 cut(s)	151
HpyCH4IV	ACGT	2 cut(s)	156, 261
HpyCH4V	TGCA	2 cut(s)	43, 209
HpyF10VI	GCNNNNNNNGC	2 cut(s)	215, 354
HpyF3I	CTNAG	1 cut(s)	134
HpySE526I	ACGT	2 cut(s)	156, 261
Hsp92II	CATG	2 cut(s)	19, 55
HspAI	GCGC	1 cut(s)	58
LmnI	GCTCC	1 cut(s)	197
Lsp1109I	GCAGC	1 cut(s)	397
LweI	GCATC	1 cut(s)	534
MaeI	CTAG	2 cut(s)	354, 419
MaeII	ACGT	2 cut(s)	156, 261
MboII	GAAGA	3 cut(s)	19, 245, 512
MhlI	GDGCHC	2 cut(s)	162, 206
MlsI	TGGCCA	1 cut(s)	348
MluCI	AATT	3 cut(s)	254, 361, 405
MluNI	TGGCCA	1 cut(s)	348
MlyI	GAGTC	1 cut(s)	478
Mox20I	TGGCCA	1 cut(s)	348
MscI	TGGCCA	1 cut(s)	348
MseI	TTAA	1 cut(s)	377
MslI	CAYNNNNRTG	1 cut(s)	20
Msp20I	TGGCCA	1 cut(s)	348
MspI	CCGG	1 cut(s)	491
MspR9I	CCNGG	1 cut(s)	548
MvaI	CCWGG	1 cut(s)	548
MwoI	GCNNNNNNNGC	2 cut(s)	215, 354
NcoI	CCATGG	1 cut(s)	15
NlaIII	CATG	2 cut(s)	19, 55
NlaIV	GGNNCC	1 cut(s)	508
PflFI	GACNNNGTC	1 cut(s)	172
PkrI	GCNGC	1 cut(s)	387
PleI	GAGTC	1 cut(s)	478
PpsI	GAGTC	1 cut(s)	478
Psp6I	CCWGG	1 cut(s)	546
PspGI	CCWGG	1 cut(s)	546
PspN4I	GGNNCC	1 cut(s)	508
PspPI	GGNCC	2 cut(s)	429, 506
PsyI	GACNNNGTC	1 cut(s)	172
RsaI	GTAC	2 cut(s)	50, 65
RsaNI	GTAC	2 cut(s)	49, 64
RseI	CAYNNNNRTG	1 cut(s)	20
SaqAI	TTAA	1 cut(s)	377
SatI	GCNGC	1 cut(s)	386
Sau96I	GGNCC	2 cut(s)	429, 506
SchI	GAGTC	1 cut(s)	478
ScrFI	CCNGG	1 cut(s)	548
SduI	GDGCHC	2 cut(s)	162, 206
SetI	ASST	8 cut(s)	50, 92, 128, 159, 194, 264, 369, 420
SfaNI	GCATC	1 cut(s)	534
SmiMI	CAYNNNNRTG	1 cut(s)	20
Sse9I	AATT	3 cut(s)	254, 361, 405
SsiI	CCGC	1 cut(s)	473
SspMI	CTAG	2 cut(s)	354, 419
StyD4I	CCNGG	1 cut(s)	546
StyI	CCWWGG	3 cut(s)	15, 432, 519
TaaI	ACNGT	1 cut(s)	151
TaiI	ACGT	2 cut(s)	159, 264
TasI	AATT	3 cut(s)	254, 361, 405
Tru1I	TTAA	1 cut(s)	377
Tru9I	TTAA	1 cut(s)	377
TscAI	CASTG	1 cut(s)	211
TseI	GCWGC	1 cut(s)	385
TspDTI	ATGAA	1 cut(s)	417
TspGWI	ACGGA	2 cut(s)	72, 120
TspRI	CASTG	1 cut(s)	211
Tth111I	GACNNNGTC	1 cut(s)	172
XapI	RAATTY	2 cut(s)	254, 405
XspI	CTAG	2 cut(s)	354, 419

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.