Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8177264.1

Orthogroup ID

OG0001674

Physical Location & Seq

Genomic Coordinates Reverse (-)

28 .. 681

Gene Structure 654 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8177264.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

gagtacaaagctgtgataaatggggagatcttctcatccaagagtgaatcatggaagcggattgaaacccctcgcttccgcatcgtgtcatcatgtggtgtgcttttcggtgaggcactccattggctattctatcccgatgttgaaaggcaacaggttccaaatctgtatgctttcgatttggagaaggaggagttttcagtaatgaagctgcctagtgctcttcaaacacacgggcttagaaactgttttatatgccagggtggtgtttcttgtgaagggttcttgtatgtaatggtcaagaaggcgcggtgggattgtggtaagttggcctattatgaaattgacttttgggtcatgagagagtatggcaacagtgattcctggactagatcgttcagcgtaaggattcccggtcagcctgagcggagggactggtatcttttgattcaagcaatttcggttagggaagctagtgcatttgtgaggaatagatgtccaagggaagaagagaagcttgacatgtctatacttcattatcgtaatgaagaagagaactccgacatgtatatgcttgacaatgatgcacaagacatggttgtatatgaagagagtctgttgtctttaatagtatcatgccgtggaggactctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like FBA_1

Protein Analysis

217

Amino Acids

25.43

Weight (kDa)

5.16

Isoelectric Point (pI)

56.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001674)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58070
fragaria_vesca	FvH4_1g01260 FvH4_1g02260 FvH4_2g05890 FvH4_7g32350
malus_domestica	MD02G1010500.v1.1 MD07G1286300.v1.1 MD15G1155500.v1.1
prunus_persica	Prupe.7G259600_v2.0.a1
pyrus_communis	pycom02g00940 pycom15g13950
rosa_chinensis	RchiOBHm_Chr2g0086031 RchiOBHm_Chr2g0086041 RchiOBHm_Chr2g0086051 RchiOBHm_Chr2g0086061 RchiOBHm_Chr2g0122651
rosa_laevigata	RLG00000015736 RLG00000015737 RLG00000015738 RLG00000015739 RLG00000015742
rosa_multiflora	Rmu_co8177264.1_g000001 Rmu_sc0003133.1_g000024 Rmu_sc0017765.1_g000004 Rmu_ssc0000355.1_g000018 Rmu_ssc0000355.1_g000019 Rmu_ssc0000355.1_g000021
rosa_roxburghii	Rroxscaffold_2G00121400 Rroxscaffold_2G00154820
rosa_rugosa	Rorug01G0465300 Rorug01G0465400 Rorug01G0465500 Rorug01G0465500 Rorug02G0241100
rosa_samantha	Rh2AG014500 Rh2AG014600 Rh2AG014700 Rh2AG014800 Rh2AG015100 Rh2AG015200 Rh2BG015000 Rh2CG015600 Rh2CG015700 Rh2CG015800 Rh2CG016200 Rh2DG016900 Rh2DG017100
rosa_wichuraiana	Rw2G001290 Rw2G001300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	353
AccBSI	CCGCTC	1 cut(s)	427
AccII	CGCG	1 cut(s)	310
AciI	CCGC	4 cut(s)	58, 79, 310, 427
AfaI	GTAC	1 cut(s)	5
AflIII	ACRYGT	2 cut(s)	522, 564
AgsI	TTSAA	4 cut(s)	65, 146, 227, 452
AjnI	CCWGG	2 cut(s)	258, 383
AluBI	AGCT	4 cut(s)	11, 211, 473, 517
AluI	AGCT	4 cut(s)	11, 211, 473, 517
Alw21I	GWGCWC	1 cut(s)	223
AoxI	GGCC	1 cut(s)	330
ApeKI	GCWGC	1 cut(s)	211
AspLEI	GCGC	1 cut(s)	310
AsuC2I	CCSGG	1 cut(s)	414
AsuHPI	GGTGA	1 cut(s)	122
Bbv12I	GWGCWC	1 cut(s)	223
BbvI	GCAGC	1 cut(s)	198
BceAI	ACGGC	1 cut(s)	624
BciT130I	CCWGG	2 cut(s)	260, 385
BcnI	CCSGG	1 cut(s)	414
BfaI	CTAG	3 cut(s)	216, 390, 474
BglII	AGATCT	1 cut(s)	27
BisI	GCNGC	1 cut(s)	212
BlsI	GCNGC	1 cut(s)	213
Bme1390I	CCNGG	3 cut(s)	260, 385, 414
BmiI	GGNNCC	1 cut(s)	159
BmrFI	CCNGG	3 cut(s)	260, 385, 414
BmsI	GCATC	2 cut(s)	90, 574
BplI	GAGNNNNNCTC	2 cut(s)	17, 49
Bpu10I	CCTNAGC	1 cut(s)	423
BpuMI	CCSGG	1 cut(s)	414
BsaJI	CCNNGG	3 cut(s)	259, 500, 640
Bse1I	ACTGG	1 cut(s)	440
BseBI	CCWGG	2 cut(s)	260, 385
BseDI	CCNNGG	3 cut(s)	259, 500, 640
BseGI	GGATG	1 cut(s)	35
BseMII	CTCAG	1 cut(s)	414
BseNI	ACTGG	1 cut(s)	440
BseRI	GAGGAG	1 cut(s)	206
BseXI	GCAGC	1 cut(s)	198
Bsh1236I	CGCG	1 cut(s)	310
BshFI	GGCC	1 cut(s)	332
BsiHKAI	GWGCWC	1 cut(s)	223
BsiSI	CCGG	1 cut(s)	414
BslFI	GGGAC	1 cut(s)	446
BsmFI	GGGAC	1 cut(s)	446
BsnI	GGCC	1 cut(s)	332
Bsp1286I	GDGCHC	1 cut(s)	223
Bsp143I	GATC	2 cut(s)	27, 392
BspACI	CCGC	4 cut(s)	58, 79, 310, 427
BspANI	GGCC	1 cut(s)	332
BspCNI	CTCAG	1 cut(s)	415
BspFNI	CGCG	1 cut(s)	310
BspHI	TCATGA	1 cut(s)	357
BspLI	GGNNCC	1 cut(s)	159
BspQI	GCTCTTC	1 cut(s)	228
BsrBI	CCGCTC	1 cut(s)	427
BsrI	ACTGG	1 cut(s)	440
BssECI	CCNNGG	3 cut(s)	259, 500, 640
BssMI	GATC	2 cut(s)	27, 392
BssT1I	CCWWGG	1 cut(s)	500
Bst2UI	CCWGG	2 cut(s)	260, 385
Bst4CI	ACNGT	2 cut(s)	248, 377
Bst6I	CTCTTC	4 cut(s)	228, 504, 546, 603
BstDEI	CTNAG	2 cut(s)	239, 423
BstDSI	CCRYGG	1 cut(s)	640
BstF5I	GGATG	1 cut(s)	35
BstFNI	CGCG	1 cut(s)	310
BstHHI	GCGC	1 cut(s)	310
BstKTI	GATC	2 cut(s)	30, 395
BstMBI	GATC	2 cut(s)	27, 392
BstNI	CCWGG	2 cut(s)	260, 385
BstNSI	RCATGY	2 cut(s)	526, 568
BstSCI	CCNGG	3 cut(s)	258, 383, 412
BstUI	CGCG	1 cut(s)	310
BstV1I	GCAGC	1 cut(s)	198
BstX2I	RGATCY	1 cut(s)	27
BstYI	RGATCY	1 cut(s)	27
BsuRI	GGCC	1 cut(s)	332
BtgI	CCRYGG	1 cut(s)	640
BtsCI	GGATG	1 cut(s)	35
BtsIMutI	CAGTG	1 cut(s)	382
CciI	TCATGA	1 cut(s)	357
CfoI	GCGC	1 cut(s)	310
Csp6I	GTAC	1 cut(s)	4
CviAII	CATG	7 cut(s)	51, 93, 358, 523, 565, 595, 636
CviJI	RGCY	8 cut(s)	11, 127, 211, 238, 332, 421, 473, 517
CviKI_1	RGCY	8 cut(s)	11, 127, 211, 238, 332, 421, 473, 517
CviQI	GTAC	1 cut(s)	4
DdeI	CTNAG	2 cut(s)	239, 423
DpnI	GATC	2 cut(s)	29, 394
DpnII	GATC	2 cut(s)	27, 392
DrdI	GACNNNNNNGTC	1 cut(s)	353
DseDI	GACNNNNNNGTC	1 cut(s)	353
Eam1104I	CTCTTC	4 cut(s)	228, 504, 546, 603
EarI	CTCTTC	4 cut(s)	228, 504, 546, 603
Eco130I	CCWWGG	1 cut(s)	500
EcoRII	CCWGG	2 cut(s)	258, 383
EcoT14I	CCWWGG	1 cut(s)	500
ErhI	CCWWGG	1 cut(s)	500
FaeI	CATG	7 cut(s)	54, 96, 361, 526, 568, 598, 639
FalI	AAGNNNNNCTT	2 cut(s)	501, 533
FaqI	GGGAC	1 cut(s)	446
FatI	CATG	7 cut(s)	50, 92, 357, 522, 564, 594, 635
Fnu4HI	GCNGC	1 cut(s)	212
FokI	GGATG	1 cut(s)	22
Fsp4HI	GCNGC	1 cut(s)	212
FspBI	CTAG	3 cut(s)	216, 390, 474
GlaI	GCGC	1 cut(s)	309
GluI	GCNGC	1 cut(s)	212
HaeIII	GGCC	1 cut(s)	332
HapII	CCGG	1 cut(s)	414
HhaI	GCGC	1 cut(s)	310
Hin1II	CATG	7 cut(s)	54, 96, 361, 526, 568, 598, 639
Hin6I	GCGC	1 cut(s)	308
HinP1I	GCGC	1 cut(s)	308
HindIII	AAGCTT	1 cut(s)	515
HinfI	GANTC	6 cut(s)	47, 380, 409, 448, 613, 648
HpaII	CCGG	1 cut(s)	414
HphI	GGTGA	1 cut(s)	122
Hpy188I	TCNGA	1 cut(s)	562
Hpy188III	TCNNGA	3 cut(s)	137, 301, 358
HpyAV	CCTTC	3 cut(s)	181, 272, 298
HpyCH4III	ACNGT	2 cut(s)	248, 377
HpyCH4V	TGCA	2 cut(s)	479, 587
HpyF3I	CTNAG	2 cut(s)	239, 423
Hsp92II	CATG	7 cut(s)	54, 96, 361, 526, 568, 598, 639
HspAI	GCGC	1 cut(s)	308
Kzo9I	GATC	2 cut(s)	27, 392
LguI	GCTCTTC	1 cut(s)	228
LpnPI	CCDG	8 cut(s)	140, 245, 272, 370, 397, 421, 427, 435
Lsp1109I	GCAGC	1 cut(s)	198
LweI	GCATC	2 cut(s)	90, 574
MaeI	CTAG	3 cut(s)	216, 390, 474
MalI	GATC	2 cut(s)	29, 394
MbiI	CCGCTC	1 cut(s)	427
MboI	GATC	2 cut(s)	27, 392
MboII	GAAGA	7 cut(s)	22, 215, 518, 521, 560, 563, 620
MflI	RGATCY	1 cut(s)	27
MhlI	GDGCHC	1 cut(s)	223
MluCI	AATT	2 cut(s)	342, 456
MlyI	GAGTC	2 cut(s)	622, 642
MmeI	TCCRAC	1 cut(s)	585
MnlI	CCTC	6 cut(s)	81, 106, 184, 423, 480, 638
MseI	TTAA	1 cut(s)	626
MslI	CAYNNNNRTG	1 cut(s)	569
MspI	CCGG	1 cut(s)	414
MspR9I	CCNGG	3 cut(s)	260, 385, 414
MvaI	CCWGG	2 cut(s)	260, 385
MvnI	CGCG	1 cut(s)	310
NciI	CCSGG	1 cut(s)	414
NdeII	GATC	2 cut(s)	27, 392
NlaIII	CATG	7 cut(s)	54, 96, 361, 526, 568, 598, 639
NlaIV	GGNNCC	1 cut(s)	159
NspI	RCATGY	2 cut(s)	526, 568
PagI	TCATGA	1 cut(s)	357
PciI	ACATGT	2 cut(s)	522, 564
PciSI	GCTCTTC	1 cut(s)	228
PfeI	GAWTC	4 cut(s)	47, 380, 409, 448
PfoI	TCCNGGA	1 cut(s)	383
PkrI	GCNGC	1 cut(s)	213
PleI	GAGTC	2 cut(s)	621, 642
PpsI	GAGTC	2 cut(s)	621, 642
PscI	ACATGT	2 cut(s)	522, 564
Psp6I	CCWGG	2 cut(s)	258, 383
PspGI	CCWGG	2 cut(s)	258, 383
PspN4I	GGNNCC	1 cut(s)	159
PsuI	RGATCY	1 cut(s)	27
RsaI	GTAC	1 cut(s)	5
RsaNI	GTAC	1 cut(s)	4
RseI	CAYNNNNRTG	1 cut(s)	569
SapI	GCTCTTC	1 cut(s)	228
SaqAI	TTAA	1 cut(s)	626
SatI	GCNGC	1 cut(s)	212
Sau3AI	GATC	2 cut(s)	27, 392
SchI	GAGTC	2 cut(s)	622, 642
ScrFI	CCNGG	3 cut(s)	260, 385, 414
SduI	GDGCHC	1 cut(s)	223
SetI	ASST	5 cut(s)	13, 159, 213, 475, 519
SfaNI	GCATC	2 cut(s)	90, 574
SmiMI	CAYNNNNRTG	1 cut(s)	569
Sse9I	AATT	2 cut(s)	342, 456
SsiI	CCGC	4 cut(s)	58, 79, 310, 427
SspMI	CTAG	3 cut(s)	216, 390, 474
StyD4I	CCNGG	3 cut(s)	258, 383, 412
StyI	CCWWGG	1 cut(s)	500
TaaI	ACNGT	2 cut(s)	248, 377
TaqI	TCGA	1 cut(s)	177
TasI	AATT	2 cut(s)	342, 456
TatI	WGTACW	1 cut(s)	3
TfiI	GAWTC	4 cut(s)	47, 380, 409, 448
Tru1I	TTAA	1 cut(s)	626
Tru9I	TTAA	1 cut(s)	626
TscAI	CASTG	1 cut(s)	382
TseI	GCWGC	1 cut(s)	211
TspDTI	ATGAA	5 cut(s)	221, 354, 524, 561, 621
TspRI	CASTG	1 cut(s)	382
XceI	RCATGY	2 cut(s)	526, 568
XspI	CTAG	3 cut(s)	216, 390, 474

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.