RchiOBHm_Chr2g0086061

F-box-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0001674
Physical Location & Seq
Forward (+)
1254669 .. 1255850
1182 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ46159

Sequence Viewer

Length: 1182 bp
ATGGCTCTCAGGAGGGCAATTTCAATACCAGAAGATATTATAGCAGGGGAAATTGTCCTGAGGTTGCCGGTGAAATCCGTAGGGCGATGCAGATGCGTTTGTAAACGGTGGCGCTTTCTATTCTCTGACCCAGACTTTGCTAAATCTCACATACAGTCTGCTCCTAAGCAGCAACGACTTGTTTTTCACCTCGGCTATGAATTCCATTCGCAAGACTTGGAGTTGGGAATGCAGAAATCTTTGGTCAGAGTGAGTCCTCCGCCGTTCAAGAATCCGAAGCATGCTCTCAGCTTTGTAGGCTCCTGCAATGGGTTGGTAGCCTGTGTAAGTGGTGCTTCCATTCAAACTTGTCGACCTTCCAGGGAGATCAGCTTGTTTATCTGGAACCCATTAACCGGATTCTACAAGGAATTCCTAGGCCAAGGTTTCTATTCTCTGATGCGTGGTTTTGGTCATGTGTCCCGCGCTGACGACTATAAAGTGGTGGAGTTACTAGATCATGAACTAGTTAGGGAGATCCGCGTCTTCTCGTTGAGCTCTCAGACATGGAAATCGATTAAATGCCCTCTCAATCTCACGTTTACAACCCTGCAAGTGAAGGGGGTGTTTTTGAATGAGGCGCTTCATTGGTTAGCTTATGAGACTGATCGCCCTGATTTAGATCCACGAATAGCACCAGTAGTCTTATTTGTTTTTGATTTGGCAAAGGAGGAGTTCCGAAAAGTACAAGTGCCTCGTGGTGTTGTTAGATGCTCAATGTATGATAGGCGTCTGGGAGTTTCTTGTGAAGGATGCTTGTATATAATGTGCTTTCCAAAATCTGGTTACCGTTGTCGTGATGCTCTTCGTGTTGAATTTTGGGTCATGAGAGAATATGGCAACATTAGCAACATTTATTCTTGGAATATAATTAGTATAAGGATTCCCAATGAGTTTACTCGGTATAATCTTGAACCAATCTTGCTCATGGAAACTTGTGCAGTTGTGATGAACAGGTCGAAGAAGAGTGGCCGACTGGTTTCACAGCAGGGGAGTAACATCCGGAGCAACGATCGAGAGGACATATACATGATTCACCATCATACTCAAAAAGAGAACCTGAAAGTGTACATTGTTGAGTCTGATCCACCAGATATGATTGTATATGAAGAGTCTATTTTCTCTTTGTTAGTGAGTAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

393

Amino Acids

45.37

Weight (kDa)

8.96

Isoelectric Point (pI)

44.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 15 - 46 2.7e-07 F-box domain
FBA_1 PF07734 86 - 385 3.6e-17 F-box associated beta propeller domain
FBA_3 PF08268 94 - 316 1.7e-11 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 821
AccI GTMKAC 1 cut(s) 352
AccII CGCG 2 cut(s) 465, 522
AccIII TCCGGA 1 cut(s) 1041
AciI CCGC 3 cut(s) 260, 463, 520
AclWI GGATC 3 cut(s) 511, 656, 1118
AcoI YGGCCR 1 cut(s) 1009
AcsI RAATTY 3 cut(s) 200, 410, 854
AcyI GRCGYC 1 cut(s) 769
AfaI GTAC 2 cut(s) 726, 1109
AfiI CCNNNNNNNGG 3 cut(s) 309, 395, 821
AgsI TTSAA 6 cut(s) 24, 268, 344, 613, 854, 953
AhlI ACTAGT 1 cut(s) 505
AjnI CCWGG 1 cut(s) 359
AluBI AGCT 4 cut(s) 291, 372, 537, 635
AluI AGCT 4 cut(s) 291, 372, 537, 635
Alw21I GWGCWC 1 cut(s) 539
Alw26I GTCTC 1 cut(s) 635
AlwI GGATC 3 cut(s) 511, 656, 1118
Aor13HI TCCGGA 1 cut(s) 1041
AoxI GGCC 2 cut(s) 418, 1009
ApeKI GCWGC 1 cut(s) 169
ApoI RAATTY 3 cut(s) 200, 410, 854
ArsI GACNNNNNNTTYG 2 cut(s) 119, 151
AspA2I CCTAGG 1 cut(s) 415
AspLEI GCGC 3 cut(s) 114, 467, 622
AsuHPI GGTGA 3 cut(s) 82, 179, 1067
AvrII CCTAGG 1 cut(s) 415
AxyI CCTNAGG 1 cut(s) 59
BanII GRGCYC 1 cut(s) 539
BauI CACGAG 1 cut(s) 735
BbsI GAAGAC 1 cut(s) 517
Bbv12I GWGCWC 1 cut(s) 539
BbvI GCAGC 1 cut(s) 181
BccI CCATC 1 cut(s) 1086
BceAI ACGGC 1 cut(s) 247
BcgI CGANNNNNNTGC 2 cut(s) 75, 109
BciT130I CCWGG 1 cut(s) 361
BcoDI GTCTC 1 cut(s) 635
BcuI ACTAGT 1 cut(s) 505
BfaI CTAG 3 cut(s) 416, 494, 506
BfoI RGCGCY 2 cut(s) 115, 623
BisI GCNGC 1 cut(s) 170
BlnI CCTAGG 1 cut(s) 415
BlsI GCNGC 1 cut(s) 171
Bme1390I CCNGG 1 cut(s) 361
BmiI GGNNCC 2 cut(s) 301, 386
BmrFI CCNGG 1 cut(s) 361
BmsI GCATC 6 cut(s) 77, 83, 429, 740, 782, 829
BpiI GAAGAC 1 cut(s) 517
Bpu10I CCTNAGC 1 cut(s) 165
Bsa29I ATCGAT 1 cut(s) 554
BsaBI GATNNNNATC 1 cut(s) 660
BsaHI GRCGYC 1 cut(s) 769
BsaJI CCNNGG 4 cut(s) 190, 360, 415, 421
BsaWI WCCGGW 2 cut(s) 395, 1041
Bsc4I CCNNNNNNNGG 3 cut(s) 309, 395, 821
Bse118I RCCGGY 1 cut(s) 67
Bse1I ACTGG 2 cut(s) 677, 1020
Bse21I CCTNAGG 1 cut(s) 59
Bse3DI GCAATG 1 cut(s) 313
Bse8I GATNNNNATC 1 cut(s) 660
BseAI TCCGGA 1 cut(s) 1041
BseBI CCWGG 1 cut(s) 361
BseCI ATCGAT 1 cut(s) 554
BseDI CCNNGG 4 cut(s) 190, 360, 415, 421
BseGI GGATG 2 cut(s) 797, 1038
BseJI GATNNNNATC 1 cut(s) 660
BseLI CCNNNNNNNGG 3 cut(s) 309, 395, 821
BseMI GCAATG 1 cut(s) 313
BseMII CTCAG 4 cut(s) 22, 50, 301, 554
BseNI ACTGG 2 cut(s) 677, 1020
BseRI GAGGAG 1 cut(s) 725
BseXI GCAGC 1 cut(s) 181
BsgI GTGCAG 1 cut(s) 999
Bsh1236I CGCG 2 cut(s) 465, 522
Bsh1285I CGRYCG 1 cut(s) 1054
BshFI GGCC 2 cut(s) 420, 1011
BshVI ATCGAT 1 cut(s) 554
BsiEI CGRYCG 1 cut(s) 1054
BsiHKAI GWGCWC 1 cut(s) 539
BsiSI CCGG 3 cut(s) 68, 396, 1042
BslFI GGGAC 1 cut(s) 445
BslI CCNNNNNNNGG 3 cut(s) 309, 395, 821
BsmAI GTCTC 1 cut(s) 635
BsmFI GGGAC 1 cut(s) 445
BsmI GAATGC 1 cut(s) 234
BsnI GGCC 2 cut(s) 420, 1011
Bsp1286I GDGCHC 1 cut(s) 539
Bsp13I TCCGGA 1 cut(s) 1041
Bsp1407I TGTACA 1 cut(s) 1107
Bsp143I GATC 7 cut(s) 366, 496, 516, 646, 661, 1051, 1123
BspACI CCGC 3 cut(s) 260, 463, 520
BspANI GGCC 2 cut(s) 420, 1011
BspCNI CTCAG 4 cut(s) 21, 51, 300, 553
BspDI ATCGAT 1 cut(s) 554
BspEI TCCGGA 1 cut(s) 1041
BspFNI CGCG 2 cut(s) 465, 522
BspHI TCATGA 2 cut(s) 499, 864
BspLI GGNNCC 2 cut(s) 301, 386
BspPI GGATC 3 cut(s) 511, 656, 1118
BspQI GCTCTTC 1 cut(s) 849
BsrDI GCAATG 1 cut(s) 313
BsrFI RCCGGY 1 cut(s) 67
BsrGI TGTACA 1 cut(s) 1107
BsrI ACTGG 2 cut(s) 677, 1020
BssAI RCCGGY 1 cut(s) 67
BssECI CCNNGG 4 cut(s) 190, 360, 415, 421
BssMI GATC 7 cut(s) 366, 496, 516, 646, 661, 1051, 1123
BssNI GRCGYC 1 cut(s) 769
BssSI CACGAG 1 cut(s) 735
BssT1I CCWWGG 2 cut(s) 415, 421
Bst2BI CACGAG 1 cut(s) 735
Bst2UI CCWGG 1 cut(s) 361
Bst4CI ACNGT 3 cut(s) 108, 156, 830
Bst6I CTCTTC 3 cut(s) 849, 998, 1143
BstACI GRCGYC 1 cut(s) 769
BstAUI TGTACA 1 cut(s) 1107
BstC8I GCNNGC 1 cut(s) 282
BstDEI CTNAG 5 cut(s) 8, 59, 165, 287, 540
BstEII GGTNACC 1 cut(s) 824
BstF5I GGATG 2 cut(s) 797, 1038
BstFNI CGCG 2 cut(s) 465, 522
BstH2I RGCGCY 2 cut(s) 115, 623
BstHHI GCGC 3 cut(s) 114, 467, 622
BstKTI GATC 7 cut(s) 369, 499, 519, 649, 664, 1054, 1126
BstMAI GTCTC 1 cut(s) 635
BstMBI GATC 7 cut(s) 366, 496, 516, 646, 661, 1051, 1123
BstMCI CGRYCG 1 cut(s) 1054
BstMWI GCNNNNNNNGC 2 cut(s) 297, 885
BstNI CCWGG 1 cut(s) 361
BstNSI RCATGY 1 cut(s) 284
BstPI GGTNACC 1 cut(s) 824
BstSCI CCNGG 1 cut(s) 359
BstUI CGCG 2 cut(s) 465, 522
BstV1I GCAGC 1 cut(s) 181
BstV2I GAAGAC 1 cut(s) 517
BstX2I RGATCY 2 cut(s) 516, 661
BstYI RGATCY 2 cut(s) 516, 661
Bsu15I ATCGAT 1 cut(s) 554
Bsu36I CCTNAGG 1 cut(s) 59
BsuRI GGCC 2 cut(s) 420, 1011
BsuTUI ATCGAT 1 cut(s) 554
BtgZI GCGATG 1 cut(s) 100
BtsCI GGATG 2 cut(s) 797, 1038
Cac8I GCNNGC 1 cut(s) 282
CciI TCATGA 2 cut(s) 499, 864
CfoI GCGC 3 cut(s) 114, 467, 622
Cfr10I RCCGGY 1 cut(s) 67
ClaI ATCGAT 1 cut(s) 554
CseI GACGC 2 cut(s) 511, 758
Csp6I GTAC 2 cut(s) 725, 1108
CviAII CATG 7 cut(s) 281, 455, 500, 546, 865, 967, 1069
CviQI GTAC 2 cut(s) 725, 1108
DdeI CTNAG 5 cut(s) 8, 59, 165, 287, 540
DpnI GATC 7 cut(s) 368, 498, 518, 648, 663, 1053, 1125
DpnII GATC 7 cut(s) 366, 496, 516, 646, 661, 1051, 1123
EaeI YGGCCR 1 cut(s) 1009
Eam1104I CTCTTC 3 cut(s) 849, 998, 1143
EarI CTCTTC 3 cut(s) 849, 998, 1143
EciI GGCGGA 1 cut(s) 249
Ecl136II GAGCTC 1 cut(s) 537
Eco130I CCWWGG 2 cut(s) 415, 421
Eco24I GRGCYC 1 cut(s) 539
Eco53kI GAGCTC 1 cut(s) 537
Eco81I CCTNAGG 1 cut(s) 59
Eco91I GGTNACC 1 cut(s) 824
EcoICRI GAGCTC 1 cut(s) 537
EcoO65I GGTNACC 1 cut(s) 824
EcoRI GAATTC 2 cut(s) 200, 410
EcoRII CCWGG 1 cut(s) 359
EcoT14I CCWWGG 2 cut(s) 415, 421
EcoT38I GRGCYC 1 cut(s) 539
ErhI CCWWGG 2 cut(s) 415, 421
FaeI CATG 7 cut(s) 284, 458, 503, 549, 868, 970, 1072
FalI AAGNNNNNCTT 2 cut(s) 319, 351
FaqI GGGAC 1 cut(s) 445
FatI CATG 7 cut(s) 280, 454, 499, 545, 864, 966, 1068
FauI CCCGC 1 cut(s) 470
FblI GTMKAC 1 cut(s) 352
Fnu4HI GCNGC 1 cut(s) 170
FokI GGATG 2 cut(s) 804, 1025
FriOI GRGCYC 1 cut(s) 539
Fsp4HI GCNGC 1 cut(s) 170
FspBI CTAG 3 cut(s) 416, 494, 506
GlaI GCGC 3 cut(s) 113, 466, 621
GluI GCNGC 1 cut(s) 170
HaeII RGCGCY 2 cut(s) 115, 623
HaeIII GGCC 2 cut(s) 420, 1011
HapII CCGG 3 cut(s) 68, 396, 1042
HgaI GACGC 2 cut(s) 511, 758
HhaI GCGC 3 cut(s) 114, 467, 622
Hin1I GRCGYC 1 cut(s) 769
Hin1II CATG 7 cut(s) 284, 458, 503, 549, 868, 970, 1072
Hin6I GCGC 3 cut(s) 112, 465, 620
HinP1I GCGC 3 cut(s) 112, 465, 620
HincII GTYRAC 1 cut(s) 353
HindII GTYRAC 1 cut(s) 353
HinfI GANTC 7 cut(s) 253, 271, 399, 922, 1072, 1118, 1151
HpaII CCGG 3 cut(s) 68, 396, 1042
HphI GGTGA 3 cut(s) 82, 179, 1067
Hpy166II GTNNAC 5 cut(s) 104, 353, 582, 936, 1108
Hpy188I TCNGA 7 cut(s) 127, 248, 276, 438, 543, 719, 1123
Hpy8I GTNNAC 5 cut(s) 104, 353, 582, 936, 1108
HpyAV CCTTC 3 cut(s) 366, 592, 782
HpyCH4III ACNGT 3 cut(s) 108, 156, 830
HpyCH4IV ACGT 1 cut(s) 578
HpyCH4V TGCA 5 cut(s) 90, 232, 306, 592, 980
HpyF10VI GCNNNNNNNGC 2 cut(s) 297, 885
HpyF3I CTNAG 5 cut(s) 8, 59, 165, 287, 540
HpySE526I ACGT 1 cut(s) 578
Hsp92I GRCGYC 1 cut(s) 769
Hsp92II CATG 7 cut(s) 284, 458, 503, 549, 868, 970, 1072
HspAI GCGC 3 cut(s) 112, 465, 620
Kpn2I TCCGGA 1 cut(s) 1041
Kzo9I GATC 7 cut(s) 366, 496, 516, 646, 661, 1051, 1123
LguI GCTCTTC 1 cut(s) 849
LmnI GCTCC 3 cut(s) 166, 305, 1044
Lsp1109I GCAGC 1 cut(s) 181
LweI GCATC 6 cut(s) 77, 83, 429, 740, 782, 829
MaeI CTAG 3 cut(s) 416, 494, 506
MaeII ACGT 1 cut(s) 578
MaeIII GTNAC 4 cut(s) 489, 824, 1034, 1175
MalI GATC 7 cut(s) 368, 498, 518, 648, 663, 1053, 1125
MboI GATC 7 cut(s) 366, 496, 516, 646, 661, 1051, 1123
MboII GAAGA 6 cut(s) 44, 517, 836, 1012, 1015, 1160
MflI RGATCY 2 cut(s) 516, 661
MhlI GDGCHC 1 cut(s) 539
MluCI AATT 6 cut(s) 18, 51, 200, 410, 854, 909
MlyI GAGTC 3 cut(s) 262, 1127, 1160
MnlI CCTC 9 cut(s) 6, 54, 200, 267, 576, 610, 703, 744, 1051
MroI TCCGGA 1 cut(s) 1041
MseI TTAA 2 cut(s) 392, 558
MslI CAYNNNNRTG 1 cut(s) 1067
MspI CCGG 3 cut(s) 68, 396, 1042
MspR9I CCNGG 1 cut(s) 361
Mva1269I GAATGC 1 cut(s) 234
MvaI CCWGG 1 cut(s) 361
MvnI CGCG 2 cut(s) 465, 522
MwoI GCNNNNNNNGC 2 cut(s) 297, 885
NdeII GATC 7 cut(s) 366, 496, 516, 646, 661, 1051, 1123
NlaIII CATG 7 cut(s) 284, 458, 503, 549, 868, 970, 1072
NlaIV GGNNCC 2 cut(s) 301, 386
NmeAIII GCCGAG 1 cut(s) 171
NspI RCATGY 1 cut(s) 284
PaeI GCATGC 1 cut(s) 284
PagI TCATGA 2 cut(s) 499, 864
PciSI GCTCTTC 1 cut(s) 849
PctI GAATGC 1 cut(s) 234
PfeI GAWTC 4 cut(s) 271, 399, 922, 1072
PflMI CCANNNNNTGG 1 cut(s) 821
PkrI GCNGC 1 cut(s) 171
Ple19I CGATCG 1 cut(s) 1054
PleI GAGTC 3 cut(s) 261, 1126, 1159
PpsI GAGTC 3 cut(s) 261, 1126, 1159
Psp124BI GAGCTC 1 cut(s) 539
Psp6I CCWGG 1 cut(s) 359
PspEI GGTNACC 1 cut(s) 824
PspGI CCWGG 1 cut(s) 359
PspN4I GGNNCC 2 cut(s) 301, 386
PsuI RGATCY 2 cut(s) 516, 661
PvuI CGATCG 1 cut(s) 1054
RsaI GTAC 2 cut(s) 726, 1109
RsaNI GTAC 2 cut(s) 725, 1108
RseI CAYNNNNRTG 1 cut(s) 1067
SacI GAGCTC 1 cut(s) 539
SalI GTCGAC 1 cut(s) 351
SapI GCTCTTC 1 cut(s) 849
SaqAI TTAA 2 cut(s) 392, 558
SatI GCNGC 1 cut(s) 170
Sau3AI GATC 7 cut(s) 366, 496, 516, 646, 661, 1051, 1123
SchI GAGTC 3 cut(s) 262, 1127, 1160
ScrFI CCNGG 1 cut(s) 361
SduI GDGCHC 1 cut(s) 539
SfaNI GCATC 6 cut(s) 77, 83, 429, 740, 782, 829
SmiMI CAYNNNNRTG 1 cut(s) 1067
SpeI ACTAGT 1 cut(s) 505
SphI GCATGC 1 cut(s) 284
Sse9I AATT 6 cut(s) 18, 51, 200, 410, 854, 909
SsiI CCGC 3 cut(s) 260, 463, 520
SspMI CTAG 3 cut(s) 416, 494, 506
SstI GAGCTC 1 cut(s) 539
StyD4I CCNGG 1 cut(s) 359
StyI CCWWGG 2 cut(s) 415, 421
TaaI ACNGT 3 cut(s) 108, 156, 830
TaiI ACGT 1 cut(s) 581
TaqI TCGA 4 cut(s) 352, 554, 998, 1054
TasI AATT 6 cut(s) 18, 51, 200, 410, 854, 909
TatI WGTACW 2 cut(s) 724, 1107
TfiI GAWTC 4 cut(s) 271, 399, 922, 1072
Tru1I TTAA 2 cut(s) 392, 558
Tru9I TTAA 2 cut(s) 392, 558
TseI GCWGC 1 cut(s) 169
TspDTI ATGAA 5 cut(s) 213, 516, 614, 1004, 1161
TspGWI ACGGA 1 cut(s) 67
Van91I CCANNNNNTGG 1 cut(s) 821
XapI RAATTY 3 cut(s) 200, 410, 854
XceI RCATGY 1 cut(s) 284
XmaJI CCTAGG 1 cut(s) 415
XmiI GTMKAC 1 cut(s) 352
XspI CTAG 3 cut(s) 416, 494, 506
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.