RLG00000015739

F-box-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0001674
Physical Location & Seq
Forward (+)
1110019 .. 1111663
1645 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000015739

Sequence Viewer

Length: 1122 bp
ATGGCTCGCAGGAGGGCAATTTCAATACCAGAAGATATTATAGCAGGGGAAATTGTCCTGAGGTTGCCGGCGAAATCCGTAGGGCGATGCAGATGCTCTGCTTCTAAGCAGCAACGACTTGTTTTTCACCTCGGCTATGAATTCCATTCGCAAGACTTGGAGTTGGGAATGCAGAAATCTTTGGTCAGAGTGACTCCTCCGCCGTTCAAGAATGCGAAGCATGCTTTCAGCTTTGTAGGCTCCTGCAATCGGTTGGTAGCCTGTGTAAGTGGTGCTTCCATTCAAACTTGTCAACGTTTCAGAGAGATCAGCTTGTTTATCTGGAACCCATTAACCGGATTCTACAAGGAATTCCTAGGCCAAGGTTTCTATTCTCTGATGCGTGGTTTTGGTCATGTGTCCGGCACTGACGACTATAAAGTGGTGGAGTTACTAGATCATGAACTAATTAGGGAGATCCGCGTCTTCTCGTTGAGGTCTCAGACATGGAAATCGATTAAATGCCCTCTCAATCTCAAGTTTACAACCATGCAAGCGAAGGGGGTGTTTTTGAATGAGGCGCTTCATTGGTTAGCTTATGAGACTGATGGCCCTGATTTAGATCCACGAATAGCACCAGTAGTCTTATTTGTTTTTGATTTGGCTAAGGAGGAGTTCCGAAAAGTACAAGTGCCTCGTGGTGTTGTTAGATGCTCAATGTATGACAGGCATCTGGGACTTTCTTGTGAAGGATGCTTGTATATAATGTGCTTTCCAAAATCCGGTTACCGTTATCGTGATACTCTTCTTGTTGATTTTTGGGTCATGAGAGAATATGGCAACATTGGCAACATTTATTCTTGGAATATAATTCGTATAAGGATTCCCAATGAGTTTACTCAGAATAATCTTGAACCAATCTTGCTCATGGAAACTTGTGCAGTTGTGATGGACAGGTCAAAGAAGAGTCGCCGACTGGTTTCACAGCAGGGGAGTAACATCCGGAGCAACGATCGAGAGGACATATACATGATTCATCATCATACTCAAAAAGAGAAACTGAAAGGGTACATTGTTGAGACTGATCCACCAGATATGATTGTATATGAAGAGAGTCTATTTTCTCTGTTAGTGAGTAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

374

Amino Acids

43.13

Weight (kDa)

8.96

Isoelectric Point (pI)

36.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_1 PF07734 73 - 368 3.7e-15 F-box associated beta propeller domain
FBA_3 PF08268 96 - 274 2.7e-10 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 462
AccIII TCCGGA 1 cut(s) 981
AciI CCGC 2 cut(s) 200, 460
AclI AACGTT 1 cut(s) 295
AclWI GGATC 3 cut(s) 451, 596, 1058
AcsI RAATTY 2 cut(s) 140, 350
AfaI GTAC 2 cut(s) 666, 1049
AfiI CCNNNNNNNGG 3 cut(s) 249, 335, 761
AgsI TTSAA 5 cut(s) 24, 208, 284, 553, 893
AluBI AGCT 3 cut(s) 231, 312, 575
AluI AGCT 3 cut(s) 231, 312, 575
Alw26I GTCTC 3 cut(s) 483, 575, 1052
AlwI GGATC 3 cut(s) 451, 596, 1058
Aor13HI TCCGGA 1 cut(s) 981
AoxI GGCC 2 cut(s) 358, 589
ApeKI GCWGC 1 cut(s) 109
ApoI RAATTY 2 cut(s) 140, 350
AspA2I CCTAGG 1 cut(s) 355
AspLEI GCGC 1 cut(s) 562
AspS9I GGNCC 1 cut(s) 590
AsuHPI GGTGA 1 cut(s) 119
AvrII CCTAGG 1 cut(s) 355
AxyI CCTNAGG 1 cut(s) 59
BauI CACGAG 1 cut(s) 675
BbsI GAAGAC 1 cut(s) 457
BbvI GCAGC 1 cut(s) 121
BccI CCATC 2 cut(s) 581, 922
BceAI ACGGC 1 cut(s) 187
BcgI CGANNNNNNTGC 2 cut(s) 75, 109
BcoDI GTCTC 3 cut(s) 483, 575, 1052
BfaI CTAG 2 cut(s) 356, 434
BfoI RGCGCY 1 cut(s) 563
BisI GCNGC 1 cut(s) 110
BlnI CCTAGG 1 cut(s) 355
BlsI GCNGC 1 cut(s) 111
BmgT120I GGNCC 1 cut(s) 590
BmiI GGNNCC 2 cut(s) 241, 326
BmsI GCATC 6 cut(s) 77, 83, 369, 680, 718, 722
BpiI GAAGAC 1 cut(s) 457
Bpu10I CCTNAGC 1 cut(s) 645
BpuEI CTTGAG 1 cut(s) 500
Bsa29I ATCGAT 1 cut(s) 494
BsaBI GATNNNNATC 1 cut(s) 600
BsaI GGTCTC 1 cut(s) 483
BsaJI CCNNGG 3 cut(s) 130, 355, 361
BsaWI WCCGGW 3 cut(s) 335, 761, 981
Bsc4I CCNNNNNNNGG 3 cut(s) 249, 335, 761
Bse118I RCCGGY 1 cut(s) 67
Bse1I ACTGG 2 cut(s) 617, 960
Bse21I CCTNAGG 1 cut(s) 59
Bse8I GATNNNNATC 1 cut(s) 600
BseAI TCCGGA 1 cut(s) 981
BseCI ATCGAT 1 cut(s) 494
BseDI CCNNGG 3 cut(s) 130, 355, 361
BseGI GGATG 2 cut(s) 737, 978
BseJI GATNNNNATC 1 cut(s) 600
BseLI CCNNNNNNNGG 3 cut(s) 249, 335, 761
BseMII CTCAG 3 cut(s) 50, 494, 893
BseNI ACTGG 2 cut(s) 617, 960
BseRI GAGGAG 2 cut(s) 186, 665
BseXI GCAGC 1 cut(s) 121
BsgI GTGCAG 1 cut(s) 939
Bsh1236I CGCG 1 cut(s) 462
Bsh1285I CGRYCG 1 cut(s) 994
BshFI GGCC 2 cut(s) 360, 591
BshVI ATCGAT 1 cut(s) 494
BsiEI CGRYCG 1 cut(s) 994
BsiSI CCGG 5 cut(s) 68, 336, 402, 762, 982
BslFI GGGAC 1 cut(s) 729
BslI CCNNNNNNNGG 3 cut(s) 249, 335, 761
BsmAI GTCTC 3 cut(s) 483, 575, 1052
BsmFI GGGAC 1 cut(s) 729
BsmI GAATGC 2 cut(s) 174, 217
BsnI GGCC 2 cut(s) 360, 591
Bso31I GGTCTC 1 cut(s) 483
Bsp13I TCCGGA 1 cut(s) 981
Bsp143I GATC 6 cut(s) 306, 436, 456, 601, 991, 1063
BspACI CCGC 2 cut(s) 200, 460
BspANI GGCC 2 cut(s) 360, 591
BspCNI CTCAG 3 cut(s) 51, 493, 892
BspDI ATCGAT 1 cut(s) 494
BspEI TCCGGA 1 cut(s) 981
BspFNI CGCG 1 cut(s) 462
BspHI TCATGA 2 cut(s) 439, 804
BspLI GGNNCC 2 cut(s) 241, 326
BspPI GGATC 3 cut(s) 451, 596, 1058
BspTNI GGTCTC 1 cut(s) 483
BsrFI RCCGGY 1 cut(s) 67
BsrI ACTGG 2 cut(s) 617, 960
BssAI RCCGGY 1 cut(s) 67
BssECI CCNNGG 3 cut(s) 130, 355, 361
BssMI GATC 6 cut(s) 306, 436, 456, 601, 991, 1063
BssSI CACGAG 1 cut(s) 675
BssT1I CCWWGG 2 cut(s) 355, 361
Bst2BI CACGAG 1 cut(s) 675
Bst4CI ACNGT 1 cut(s) 770
Bst6I CTCTTC 3 cut(s) 789, 938, 1083
BstC8I GCNNGC 4 cut(s) 7, 69, 222, 534
BstDEI CTNAG 5 cut(s) 59, 105, 480, 645, 879
BstEII GGTNACC 1 cut(s) 764
BstF5I GGATG 2 cut(s) 737, 978
BstFNI CGCG 1 cut(s) 462
BstH2I RGCGCY 1 cut(s) 563
BstHHI GCGC 1 cut(s) 562
BstKTI GATC 6 cut(s) 309, 439, 459, 604, 994, 1066
BstMAI GTCTC 3 cut(s) 483, 575, 1052
BstMBI GATC 6 cut(s) 306, 436, 456, 601, 991, 1063
BstMCI CGRYCG 1 cut(s) 994
BstMWI GCNNNNNNNGC 3 cut(s) 221, 237, 825
BstNSI RCATGY 1 cut(s) 224
BstPI GGTNACC 1 cut(s) 764
BstUI CGCG 1 cut(s) 462
BstV1I GCAGC 1 cut(s) 121
BstV2I GAAGAC 1 cut(s) 457
BstX2I RGATCY 2 cut(s) 456, 601
BstYI RGATCY 2 cut(s) 456, 601
Bsu15I ATCGAT 1 cut(s) 494
Bsu36I CCTNAGG 1 cut(s) 59
BsuRI GGCC 2 cut(s) 360, 591
BsuTUI ATCGAT 1 cut(s) 494
BtgZI GCGATG 1 cut(s) 100
BtsCI GGATG 2 cut(s) 737, 978
BtsIMutI CAGTG 1 cut(s) 405
Cac8I GCNNGC 4 cut(s) 7, 69, 222, 534
CciI TCATGA 2 cut(s) 439, 804
CfoI GCGC 1 cut(s) 562
Cfr10I RCCGGY 1 cut(s) 67
Cfr13I GGNCC 1 cut(s) 590
ClaI ATCGAT 1 cut(s) 494
CseI GACGC 1 cut(s) 451
Csp6I GTAC 2 cut(s) 665, 1048
CviAII CATG 8 cut(s) 221, 395, 440, 486, 529, 805, 907, 1009
CviQI GTAC 2 cut(s) 665, 1048
DdeI CTNAG 5 cut(s) 59, 105, 480, 645, 879
DpnI GATC 6 cut(s) 308, 438, 458, 603, 993, 1065
DpnII GATC 6 cut(s) 306, 436, 456, 601, 991, 1063
Eam1104I CTCTTC 3 cut(s) 789, 938, 1083
EarI CTCTTC 3 cut(s) 789, 938, 1083
EciI GGCGGA 1 cut(s) 189
Eco130I CCWWGG 2 cut(s) 355, 361
Eco31I GGTCTC 1 cut(s) 483
Eco81I CCTNAGG 1 cut(s) 59
Eco91I GGTNACC 1 cut(s) 764
EcoO65I GGTNACC 1 cut(s) 764
EcoRI GAATTC 2 cut(s) 140, 350
EcoT14I CCWWGG 2 cut(s) 355, 361
ErhI CCWWGG 2 cut(s) 355, 361
FaeI CATG 8 cut(s) 224, 398, 443, 489, 532, 808, 910, 1012
FalI AAGNNNNNCTT 2 cut(s) 259, 291
FaqI GGGAC 1 cut(s) 729
FatI CATG 8 cut(s) 220, 394, 439, 485, 528, 804, 906, 1008
Fnu4HI GCNGC 1 cut(s) 110
FokI GGATG 2 cut(s) 744, 965
Fsp4HI GCNGC 1 cut(s) 110
FspBI CTAG 2 cut(s) 356, 434
GlaI GCGC 1 cut(s) 561
GluI GCNGC 1 cut(s) 110
HaeII RGCGCY 1 cut(s) 563
HaeIII GGCC 2 cut(s) 360, 591
HapII CCGG 5 cut(s) 68, 336, 402, 762, 982
HgaI GACGC 1 cut(s) 451
HhaI GCGC 1 cut(s) 562
Hin1II CATG 8 cut(s) 224, 398, 443, 489, 532, 808, 910, 1012
Hin6I GCGC 1 cut(s) 560
HinP1I GCGC 1 cut(s) 560
HincII GTYRAC 1 cut(s) 293
HindII GTYRAC 1 cut(s) 293
HinfI GANTC 6 cut(s) 193, 339, 862, 946, 1012, 1093
HpaII CCGG 5 cut(s) 68, 336, 402, 762, 982
HphI GGTGA 1 cut(s) 119
Hpy166II GTNNAC 3 cut(s) 293, 522, 876
Hpy188I TCNGA 6 cut(s) 188, 302, 378, 483, 659, 882
Hpy188III TCNNGA 9 cut(s) 58, 208, 322, 440, 776, 805, 890, 982, 995
Hpy8I GTNNAC 3 cut(s) 293, 522, 876
HpyAV CCTTC 2 cut(s) 532, 722
HpyCH4III ACNGT 1 cut(s) 770
HpyCH4IV ACGT 1 cut(s) 295
HpyCH4V TGCA 5 cut(s) 90, 172, 246, 532, 920
HpyF10VI GCNNNNNNNGC 3 cut(s) 221, 237, 825
HpyF3I CTNAG 5 cut(s) 59, 105, 480, 645, 879
HpySE526I ACGT 1 cut(s) 295
Hsp92II CATG 8 cut(s) 224, 398, 443, 489, 532, 808, 910, 1012
HspAI GCGC 1 cut(s) 560
Kpn2I TCCGGA 1 cut(s) 981
KroI GCCGGC 1 cut(s) 67
KroNI GCCGGC 1 cut(s) 69
Kzo9I GATC 6 cut(s) 306, 436, 456, 601, 991, 1063
LmnI GCTCC 2 cut(s) 245, 984
Lsp1109I GCAGC 1 cut(s) 121
LweI GCATC 6 cut(s) 77, 83, 369, 680, 718, 722
MaeI CTAG 2 cut(s) 356, 434
MaeII ACGT 1 cut(s) 295
MaeIII GTNAC 5 cut(s) 190, 429, 764, 974, 1115
MalI GATC 6 cut(s) 308, 438, 458, 603, 993, 1065
MboI GATC 6 cut(s) 306, 436, 456, 601, 991, 1063
MboII GAAGA 5 cut(s) 44, 457, 776, 955, 1100
MflI RGATCY 2 cut(s) 456, 601
MluCI AATT 6 cut(s) 18, 51, 140, 350, 447, 849
MlyI GAGTC 3 cut(s) 187, 955, 1102
MroI TCCGGA 1 cut(s) 981
MroNI GCCGGC 1 cut(s) 67
MseI TTAA 2 cut(s) 332, 498
MslI CAYNNNNRTG 1 cut(s) 1007
MspI CCGG 5 cut(s) 68, 336, 402, 762, 982
Mva1269I GAATGC 2 cut(s) 174, 217
MvnI CGCG 1 cut(s) 462
MwoI GCNNNNNNNGC 3 cut(s) 221, 237, 825
NaeI GCCGGC 1 cut(s) 69
NdeII GATC 6 cut(s) 306, 436, 456, 601, 991, 1063
NgoMIV GCCGGC 1 cut(s) 67
NlaIII CATG 8 cut(s) 224, 398, 443, 489, 532, 808, 910, 1012
NlaIV GGNNCC 2 cut(s) 241, 326
NmeAIII GCCGAG 1 cut(s) 111
NmuCI GTSAC 1 cut(s) 190
NspI RCATGY 1 cut(s) 224
PaeI GCATGC 1 cut(s) 224
PagI TCATGA 2 cut(s) 439, 804
PctI GAATGC 2 cut(s) 174, 217
PdiI GCCGGC 1 cut(s) 69
PfeI GAWTC 3 cut(s) 339, 862, 1012
PkrI GCNGC 1 cut(s) 111
Ple19I CGATCG 1 cut(s) 994
PleI GAGTC 3 cut(s) 187, 954, 1101
PpsI GAGTC 3 cut(s) 187, 954, 1101
Psp1406I AACGTT 1 cut(s) 295
PspEI GGTNACC 1 cut(s) 764
PspN4I GGNNCC 2 cut(s) 241, 326
PspPI GGNCC 1 cut(s) 590
PsuI RGATCY 2 cut(s) 456, 601
PvuI CGATCG 1 cut(s) 994
RsaI GTAC 2 cut(s) 666, 1049
RsaNI GTAC 2 cut(s) 665, 1048
RseI CAYNNNNRTG 1 cut(s) 1007
SaqAI TTAA 2 cut(s) 332, 498
SatI GCNGC 1 cut(s) 110
Sau3AI GATC 6 cut(s) 306, 436, 456, 601, 991, 1063
Sau96I GGNCC 1 cut(s) 590
SchI GAGTC 3 cut(s) 187, 955, 1102
SetI ASST 9 cut(s) 65, 132, 233, 298, 314, 367, 479, 577, 938
SfaNI GCATC 6 cut(s) 77, 83, 369, 680, 718, 722
SmiMI CAYNNNNRTG 1 cut(s) 1007
SmlI CTYRAG 1 cut(s) 515
SmoI CTYRAG 1 cut(s) 515
SphI GCATGC 1 cut(s) 224
Sse9I AATT 6 cut(s) 18, 51, 140, 350, 447, 849
SsiI CCGC 2 cut(s) 200, 460
SspMI CTAG 2 cut(s) 356, 434
StyI CCWWGG 2 cut(s) 355, 361
TaaI ACNGT 1 cut(s) 770
TaiI ACGT 1 cut(s) 298
TaqI TCGA 2 cut(s) 494, 994
TasI AATT 6 cut(s) 18, 51, 140, 350, 447, 849
TatI WGTACW 1 cut(s) 664
TfiI GAWTC 3 cut(s) 339, 862, 1012
Tru1I TTAA 2 cut(s) 332, 498
Tru9I TTAA 2 cut(s) 332, 498
TscAI CASTG 1 cut(s) 412
TseFI GTSAC 1 cut(s) 190
TseI GCWGC 1 cut(s) 109
Tsp45I GTSAC 1 cut(s) 190
TspDTI ATGAA 5 cut(s) 153, 456, 554, 1004, 1101
TspGWI ACGGA 1 cut(s) 67
TspRI CASTG 1 cut(s) 412
XapI RAATTY 2 cut(s) 140, 350
XceI RCATGY 1 cut(s) 224
XmaJI CCTAGG 1 cut(s) 355
XspI CTAG 2 cut(s) 356, 434
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.