pycom15g13950
ERF Family

Belongs to the calycin superfamily. Lipocalin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0001674
Physical Location & Seq
Reverse (-)
9503504 .. 9504293
790 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g13950.2

Sequence Viewer

Length: 561 bp
ATGGCGACGAAGAAGGCGATGGAAGTCGTGAAGGGCCTGGATCTGCAGCGCTACATGGGGCGGTGGTACGAGATTGCCTCCGTTCCGTCGCGGTTTCAGCCCAAGAACGGCGAGAACACGCGTGCCACCTACACTCTGAAAGACGACGGCACCGTGAATGTGCTGAACGAGACTTGGACCGACGGGAAGAGGGGGTTCATCGAGGGCACCGCCTACAAGGCGGACCCGAACAGCGACGAGGCGAAACTGAAGGTGAGGTTTTATGTTCCGCCATTTCTGCCGATCATTCCTGTCACGGGGGATTACTGGGTTTTGTTCATTGATGAGGATTATCAGTACGCTTTGATTGGCCAGCCTAGCAGGAATTCCCTTTGGATATTGAGCAGGCAGCCTCATCTGGATGAAGAAATATACAACCAGCTGGTCCAAAGGGCGGCGGACGAGGGCTACGATGTGAGCAAACTCCACAAGACGCGGCAGAGCGAGAGTCCGCCGGAGGGAGAAGAAGGCCCCAAAGACACCAAGGGCATCTGGTGGTTCAAATCCATCTTCGGAAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0009279 GO:0016020 GO:0019867 GO:0030312 GO:0030313 GO:0031975 GO:0044462 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipocalin_2

Protein Analysis

187

Amino Acids

21.46

Weight (kDa)

5.79

Isoelectric Point (pI)

45.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 149, 206
AccII CGCG 3 cut(s) 91, 121, 475
AciI CCGC 9 cut(s) 61, 91, 210, 221, 269, 434, 437, 475, 491
AclWI GGATC 1 cut(s) 48
AcoI YGGCCR 1 cut(s) 349
AcsI RAATTY 1 cut(s) 364
AcuI CTGAAG 1 cut(s) 269
AfaI GTAC 2 cut(s) 68, 338
AfeI AGCGCT 1 cut(s) 50
AfiI CCNNNNNNNGG 4 cut(s) 107, 296, 433, 497
AflIII ACRYGT 1 cut(s) 119
AgsI TTSAA 1 cut(s) 541
AjnI CCWGG 1 cut(s) 36
AluBI AGCT 1 cut(s) 421
AluI AGCT 1 cut(s) 421
Alw26I GTCTC 1 cut(s) 164
AlwI GGATC 1 cut(s) 48
Aor51HI AGCGCT 1 cut(s) 50
AoxI GGCC 3 cut(s) 34, 349, 508
ApeKI GCWGC 2 cut(s) 46, 388
ApoI RAATTY 1 cut(s) 364
AspLEI GCGC 1 cut(s) 51
AspS9I GGNCC 5 cut(s) 34, 177, 223, 424, 509
AsuHPI GGTGA 1 cut(s) 265
AvaII GGWCC 3 cut(s) 177, 223, 424
BaeGI GKGCMC 1 cut(s) 209
BalI TGGCCA 1 cut(s) 351
BanI GGYRCC 2 cut(s) 149, 206
BbvI GCAGC 2 cut(s) 58, 400
BccI CCATC 2 cut(s) 13, 554
BceAI ACGGC 2 cut(s) 124, 163
BciT130I CCWGG 1 cut(s) 38
BcoDI GTCTC 1 cut(s) 164
BfaI CTAG 1 cut(s) 357
BfmI CTRYAG 1 cut(s) 44
BfoI RGCGCY 1 cut(s) 52
BglI GCCNNNNNGGC 1 cut(s) 218
BisI GCNGC 4 cut(s) 47, 389, 435, 476
BlsI GCNGC 4 cut(s) 48, 390, 436, 477
Bme1390I CCNGG 1 cut(s) 38
Bme18I GGWCC 3 cut(s) 177, 223, 424
BmgT120I GGNCC 5 cut(s) 34, 177, 223, 424, 509
BmiI GGNNCC 4 cut(s) 151, 208, 225, 511
BmrFI CCNGG 1 cut(s) 38
BmrI ACTGGG 1 cut(s) 316
BmsI GCATC 1 cut(s) 537
BmuI ACTGGG 1 cut(s) 316
BplI GAGNNNNNCTC 2 cut(s) 62, 94
BsaJI CCNNGG 1 cut(s) 522
Bsc4I CCNNNNNNNGG 4 cut(s) 107, 296, 433, 497
Bse1I ACTGG 1 cut(s) 311
BseBI CCWGG 1 cut(s) 38
BseDI CCNNGG 1 cut(s) 522
BseGI GGATG 1 cut(s) 406
BseLI CCNNNNNNNGG 4 cut(s) 107, 296, 433, 497
BseNI ACTGG 1 cut(s) 311
BseSI GKGCMC 1 cut(s) 209
BseXI GCAGC 2 cut(s) 58, 400
Bsh1236I CGCG 3 cut(s) 91, 121, 475
BshFI GGCC 3 cut(s) 36, 351, 510
BshNI GGYRCC 2 cut(s) 149, 206
BsiSI CCGG 1 cut(s) 494
BslI CCNNNNNNNGG 4 cut(s) 107, 296, 433, 497
BsmAI GTCTC 1 cut(s) 164
BsnI GGCC 3 cut(s) 36, 351, 510
Bsp1286I GDGCHC 1 cut(s) 209
Bsp143I GATC 2 cut(s) 40, 282
BspACI CCGC 9 cut(s) 61, 91, 210, 221, 269, 434, 437, 475, 491
BspANI GGCC 3 cut(s) 36, 351, 510
BspFNI CGCG 3 cut(s) 91, 121, 475
BspLI GGNNCC 4 cut(s) 151, 208, 225, 511
BspMAI CTGCAG 1 cut(s) 48
BspPI GGATC 1 cut(s) 48
BspT107I GGYRCC 2 cut(s) 149, 206
BsrI ACTGG 1 cut(s) 311
BssECI CCNNGG 1 cut(s) 522
BssMI GATC 2 cut(s) 40, 282
BssT1I CCWWGG 1 cut(s) 522
Bst2UI CCWGG 1 cut(s) 38
Bst4CI ACNGT 1 cut(s) 154
Bst6I CTCTTC 1 cut(s) 182
BstC8I GCNNGC 3 cut(s) 123, 353, 386
BstF5I GGATG 1 cut(s) 406
BstFNI CGCG 3 cut(s) 91, 121, 475
BstH2I RGCGCY 1 cut(s) 52
BstHHI GCGC 1 cut(s) 51
BstKTI GATC 2 cut(s) 43, 285
BstMAI GTCTC 1 cut(s) 164
BstMBI GATC 2 cut(s) 40, 282
BstMWI GCNNNNNNNGC 4 cut(s) 97, 218, 277, 357
BstNI CCWGG 1 cut(s) 38
BstSCI CCNGG 1 cut(s) 36
BstSFI CTRYAG 1 cut(s) 44
BstSLI GKGCMC 1 cut(s) 209
BstUI CGCG 3 cut(s) 91, 121, 475
BstV1I GCAGC 2 cut(s) 58, 400
BstX2I RGATCY 1 cut(s) 40
BstYI RGATCY 1 cut(s) 40
BsuRI GGCC 3 cut(s) 36, 351, 510
BtgZI GCGATG 1 cut(s) 32
BtsCI GGATG 1 cut(s) 406
Cac8I GCNNGC 3 cut(s) 123, 353, 386
CfoI GCGC 1 cut(s) 51
Cfr13I GGNCC 5 cut(s) 34, 177, 223, 424, 509
CseI GACGC 1 cut(s) 481
Csp6I GTAC 2 cut(s) 67, 337
CviAII CATG 1 cut(s) 55
CviJI RGCY 8 cut(s) 36, 100, 351, 355, 391, 421, 447, 510
CviKI_1 RGCY 8 cut(s) 36, 100, 351, 355, 391, 421, 447, 510
CviQI GTAC 2 cut(s) 67, 337
DpnI GATC 2 cut(s) 42, 284
DpnII GATC 2 cut(s) 40, 282
EaeI YGGCCR 1 cut(s) 349
Eam1104I CTCTTC 1 cut(s) 182
EarI CTCTTC 1 cut(s) 182
EciI GGCGGA 4 cut(s) 236, 258, 452, 480
Eco130I CCWWGG 1 cut(s) 522
Eco47I GGWCC 3 cut(s) 177, 223, 424
Eco47III AGCGCT 1 cut(s) 50
Eco57I CTGAAG 1 cut(s) 269
EcoO109I RGGNCCY 2 cut(s) 34, 509
EcoRI GAATTC 1 cut(s) 364
EcoRII CCWGG 1 cut(s) 36
EcoT14I CCWWGG 1 cut(s) 522
ErhI CCWWGG 1 cut(s) 522
FaeI CATG 1 cut(s) 58
FaiI YATR 3 cut(s) 56, 264, 412
FatI CATG 1 cut(s) 54
Fnu4HI GCNGC 4 cut(s) 47, 389, 435, 476
FokI GGATG 1 cut(s) 413
Fsp4HI GCNGC 4 cut(s) 47, 389, 435, 476
FspBI CTAG 1 cut(s) 357
GlaI GCGC 1 cut(s) 50
GluI GCNGC 4 cut(s) 47, 389, 435, 476
HaeII RGCGCY 1 cut(s) 52
HaeIII GGCC 3 cut(s) 36, 351, 510
HapII CCGG 1 cut(s) 494
HgaI GACGC 1 cut(s) 481
HhaI GCGC 1 cut(s) 51
Hin1II CATG 1 cut(s) 58
Hin6I GCGC 1 cut(s) 49
HinP1I GCGC 1 cut(s) 49
HinfI GANTC 1 cut(s) 487
HpaII CCGG 1 cut(s) 494
HphI GGTGA 1 cut(s) 265
Hpy188I TCNGA 2 cut(s) 138, 554
Hpy188III TCNNGA 2 cut(s) 28, 398
Hpy99I CGWCG 5 cut(s) 10, 91, 149, 185, 239
HpyAV CCTTC 4 cut(s) 7, 25, 244, 500
HpyCH4III ACNGT 1 cut(s) 154
HpyCH4V TGCA 1 cut(s) 46
HpyF10VI GCNNNNNNNGC 4 cut(s) 97, 218, 277, 357
Hsp92II CATG 1 cut(s) 58
HspAI GCGC 1 cut(s) 49
Kzo9I GATC 2 cut(s) 40, 282
Lsp1109I GCAGC 2 cut(s) 58, 400
LweI GCATC 1 cut(s) 537
MaeI CTAG 1 cut(s) 357
MaeIII GTNAC 1 cut(s) 292
MalI GATC 2 cut(s) 42, 284
MboI GATC 2 cut(s) 40, 282
MboII GAAGA 5 cut(s) 22, 199, 416, 515, 541
MflI RGATCY 1 cut(s) 40
MhlI GDGCHC 1 cut(s) 209
MlsI TGGCCA 1 cut(s) 351
MluCI AATT 1 cut(s) 364
MluI ACGCGT 1 cut(s) 119
MluNI TGGCCA 1 cut(s) 351
MlyI GAGTC 1 cut(s) 496
MnlI CCTC 9 cut(s) 88, 183, 196, 232, 249, 319, 402, 436, 490
Mox20I TGGCCA 1 cut(s) 351
MscI TGGCCA 1 cut(s) 351
MslI CAYNNNNRTG 1 cut(s) 399
Msp20I TGGCCA 1 cut(s) 351
MspA1I CMGCKG 1 cut(s) 421
MspI CCGG 1 cut(s) 494
MspR9I CCNGG 1 cut(s) 38
MvaI CCWGG 1 cut(s) 38
MvnI CGCG 3 cut(s) 91, 121, 475
MwoI GCNNNNNNNGC 4 cut(s) 97, 218, 277, 357
NdeII GATC 2 cut(s) 40, 282
NlaIII CATG 1 cut(s) 58
NlaIV GGNNCC 4 cut(s) 151, 208, 225, 511
NmuCI GTSAC 1 cut(s) 292
PcsI WCGNNNNNNNCGW 3 cut(s) 14, 150, 447
PkrI GCNGC 4 cut(s) 48, 390, 436, 477
PleI GAGTC 1 cut(s) 495
PpsI GAGTC 1 cut(s) 495
Psp6I CCWGG 1 cut(s) 36
PspGI CCWGG 1 cut(s) 36
PspN4I GGNNCC 4 cut(s) 151, 208, 225, 511
PspPI GGNCC 5 cut(s) 34, 177, 223, 424, 509
PstI CTGCAG 1 cut(s) 48
PsuI RGATCY 1 cut(s) 40
PvuII CAGCTG 1 cut(s) 421
RsaI GTAC 2 cut(s) 68, 338
RsaNI GTAC 2 cut(s) 67, 337
RseI CAYNNNNRTG 1 cut(s) 399
SatI GCNGC 4 cut(s) 47, 389, 435, 476
Sau3AI GATC 2 cut(s) 40, 282
Sau96I GGNCC 5 cut(s) 34, 177, 223, 424, 509
SchI GAGTC 1 cut(s) 496
ScrFI CCNGG 1 cut(s) 38
SduI GDGCHC 1 cut(s) 209
SetI ASST 4 cut(s) 131, 255, 260, 423
SfaNI GCATC 1 cut(s) 537
SfcI CTRYAG 1 cut(s) 44
SinI GGWCC 3 cut(s) 177, 223, 424
SmiMI CAYNNNNRTG 1 cut(s) 399
Sse9I AATT 1 cut(s) 364
SsiI CCGC 9 cut(s) 61, 91, 210, 221, 269, 434, 437, 475, 491
SspMI CTAG 1 cut(s) 357
StyD4I CCNGG 1 cut(s) 36
StyI CCWWGG 1 cut(s) 522
TaaI ACNGT 1 cut(s) 154
TaqI TCGA 1 cut(s) 201
TaqII GACCGA 1 cut(s) 194
TasI AATT 1 cut(s) 364
TauI GCSGC 2 cut(s) 437, 478
TseFI GTSAC 1 cut(s) 292
TseI GCWGC 2 cut(s) 46, 388
Tsp45I GTSAC 1 cut(s) 292
TspDTI ATGAA 3 cut(s) 187, 307, 417
TspGWI ACGGA 2 cut(s) 70, 75
VpaK11BI GGWCC 3 cut(s) 177, 223, 424
XapI RAATTY 1 cut(s) 364
XspI CTAG 1 cut(s) 357
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.