Rorug01G0465300

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0001674
Physical Location & Seq
Forward (+)
55793329 .. 55795200
1872 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0465300.1

Sequence Viewer

Length: 315 bp
ATGGCGACGAATCTGAGCCGTCGATTCTCATCAACGATCGTAACGAAAGCCGAGCCTCTGGCTCGCTCAGCTGTCAACTCAGTGAGTCGGCTCTTGTCCTCCTCGACTGGGCAATCTCAACCGGAGCGCGAAAACGCGGAGGTGAAATACGACGGAAGCGCCAAACAGGACGACGATGGAAAGAATGAAAAGGGTGAAAGTGACGGAGATGAGTTGGACTTGAATAAAGAGACGGGTGAGATCGGCGGGCCGAAAGGGCCCGAGCCGACCCGTTACGGCGATTGGGAAAAAAACGGTCGGTGCTCTGATTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1 FBA_3

Protein Analysis

104

Amino Acids

11.28

Weight (kDa)

4.78

Isoelectric Point (pI)

46.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1674 PF07896 68 - 104 8.9e-19 Protein of unknown function (DUF1674)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 129, 137
AciI CCGC 2 cut(s) 137, 246
AfiI CCNNNNNNNGG 1 cut(s) 108
AgsI TTSAA 1 cut(s) 223
AluBI AGCT 1 cut(s) 71
AluI AGCT 1 cut(s) 71
Alw21I GWGCWC 1 cut(s) 305
Alw26I GTCTC 1 cut(s) 224
Ama87I CYCGRG 1 cut(s) 260
AoxI GGCC 2 cut(s) 248, 257
ApaI GGGCCC 1 cut(s) 261
AspLEI GCGC 2 cut(s) 129, 161
AspS9I GGNCC 3 cut(s) 248, 257, 258
AsuHPI GGTGA 3 cut(s) 154, 206, 248
AvaI CYCGRG 1 cut(s) 260
BaeGI GKGCMC 1 cut(s) 261
BanII GRGCYC 1 cut(s) 261
Bbv12I GWGCWC 1 cut(s) 305
BccI CCATC 1 cut(s) 170
BceAI ACGGC 2 cut(s) 3, 292
BcoDI GTCTC 1 cut(s) 224
BfoI RGCGCY 1 cut(s) 162
BglI GCCNNNNNGGC 1 cut(s) 256
BlpI GCTNAGC 1 cut(s) 67
BmeT110I CYCGRG 1 cut(s) 260
BmgT120I GGNCC 3 cut(s) 248, 257, 258
BmiI GGNNCC 1 cut(s) 259
BmrI ACTGGG 1 cut(s) 117
BmuI ACTGGG 1 cut(s) 117
Bpu1102I GCTNAGC 1 cut(s) 67
BsaBI GATNNNNATC 1 cut(s) 28
BsaWI WCCGGW 1 cut(s) 121
Bsc4I CCNNNNNNNGG 1 cut(s) 108
Bse1I ACTGG 1 cut(s) 112
Bse8I GATNNNNATC 1 cut(s) 28
BseJI GATNNNNATC 1 cut(s) 28
BseLI CCNNNNNNNGG 1 cut(s) 108
BseMII CTCAG 3 cut(s) 5, 81, 93
BseNI ACTGG 1 cut(s) 112
BseRI GAGGAG 1 cut(s) 91
BseSI GKGCMC 1 cut(s) 261
Bsh1236I CGCG 2 cut(s) 129, 137
Bsh1285I CGRYCG 2 cut(s) 39, 298
BshFI GGCC 2 cut(s) 250, 259
BsiEI CGRYCG 2 cut(s) 39, 298
BsiHKAI GWGCWC 1 cut(s) 305
BsiHKCI CYCGRG 1 cut(s) 260
BsiSI CCGG 1 cut(s) 122
BslI CCNNNNNNNGG 1 cut(s) 108
BsmAI GTCTC 1 cut(s) 224
BsmBI CGTCTC 1 cut(s) 224
BsnI GGCC 2 cut(s) 250, 259
BsoBI CYCGRG 1 cut(s) 260
Bsp120I GGGCCC 1 cut(s) 257
Bsp1286I GDGCHC 2 cut(s) 261, 305
Bsp143I GATC 2 cut(s) 36, 240
Bsp1720I GCTNAGC 1 cut(s) 67
BspACI CCGC 2 cut(s) 137, 246
BspANI GGCC 2 cut(s) 250, 259
BspCNI CTCAG 3 cut(s) 6, 80, 92
BspFNI CGCG 2 cut(s) 129, 137
BspLI GGNNCC 1 cut(s) 259
BsrI ACTGG 1 cut(s) 112
BssMI GATC 2 cut(s) 36, 240
Bst4CI ACNGT 1 cut(s) 296
BstC8I GCNNGC 2 cut(s) 64, 248
BstDEI CTNAG 3 cut(s) 14, 67, 79
BstFNI CGCG 2 cut(s) 129, 137
BstH2I RGCGCY 1 cut(s) 162
BstHHI GCGC 2 cut(s) 129, 161
BstKTI GATC 2 cut(s) 39, 243
BstMAI GTCTC 1 cut(s) 224
BstMBI GATC 2 cut(s) 36, 240
BstMCI CGRYCG 2 cut(s) 39, 298
BstMWI GCNNNNNNNGC 2 cut(s) 68, 256
BstSLI GKGCMC 1 cut(s) 261
BstUI CGCG 2 cut(s) 129, 137
BsuRI GGCC 2 cut(s) 250, 259
BtsIMutI CAGTG 1 cut(s) 87
Cac8I GCNNGC 2 cut(s) 64, 248
CfoI GCGC 2 cut(s) 129, 161
Cfr13I GGNCC 3 cut(s) 248, 257, 258
CviJI RGCY 9 cut(s) 18, 50, 55, 62, 71, 91, 250, 259, 265
CviKI_1 RGCY 9 cut(s) 18, 50, 55, 62, 71, 91, 250, 259, 265
DdeI CTNAG 3 cut(s) 14, 67, 79
DpnI GATC 2 cut(s) 38, 242
DpnII GATC 2 cut(s) 36, 240
Eco24I GRGCYC 1 cut(s) 261
Eco88I CYCGRG 1 cut(s) 260
EcoO109I RGGNCCY 1 cut(s) 257
EcoT38I GRGCYC 1 cut(s) 261
Esp3I CGTCTC 1 cut(s) 224
FauI CCCGC 1 cut(s) 239
FriOI GRGCYC 1 cut(s) 261
GlaI GCGC 2 cut(s) 128, 160
HaeII RGCGCY 1 cut(s) 162
HaeIII GGCC 2 cut(s) 250, 259
HapII CCGG 1 cut(s) 122
HhaI GCGC 2 cut(s) 129, 161
Hin6I GCGC 2 cut(s) 127, 159
HinP1I GCGC 2 cut(s) 127, 159
HincII GTYRAC 1 cut(s) 76
HindII GTYRAC 1 cut(s) 76
HinfI GANTC 3 cut(s) 10, 24, 85
HpaII CCGG 1 cut(s) 122
HphI GGTGA 3 cut(s) 154, 206, 248
Hpy166II GTNNAC 1 cut(s) 76
Hpy188I TCNGA 2 cut(s) 15, 307
Hpy8I GTNNAC 1 cut(s) 76
Hpy99I CGWCG 4 cut(s) 10, 24, 155, 176
HpyCH4III ACNGT 1 cut(s) 296
HpyF10VI GCNNNNNNNGC 2 cut(s) 68, 256
HpyF3I CTNAG 3 cut(s) 14, 67, 79
HspAI GCGC 2 cut(s) 127, 159
Kzo9I GATC 2 cut(s) 36, 240
LmnI GCTCC 1 cut(s) 124
LpnPI CCDG 4 cut(s) 44, 93, 135, 152
MaeIII GTNAC 3 cut(s) 40, 200, 272
MalI GATC 2 cut(s) 38, 242
MboI GATC 2 cut(s) 36, 240
MhlI GDGCHC 2 cut(s) 261, 305
MlyI GAGTC 1 cut(s) 94
MmeI TCCRAC 1 cut(s) 195
MnlI CCTC 4 cut(s) 66, 109, 112, 133
MseI TTAA 1 cut(s) 313
MspA1I CMGCKG 1 cut(s) 71
MspI CCGG 1 cut(s) 122
MvnI CGCG 2 cut(s) 129, 137
MwoI GCNNNNNNNGC 2 cut(s) 68, 256
NdeII GATC 2 cut(s) 36, 240
NlaIV GGNNCC 1 cut(s) 259
NmeAIII GCCGAG 1 cut(s) 76
NmuCI GTSAC 1 cut(s) 200
PcsI WCGNNNNNNNCGW 1 cut(s) 41
PfeI GAWTC 2 cut(s) 10, 24
Ple19I CGATCG 1 cut(s) 39
PleI GAGTC 1 cut(s) 93
PpsI GAGTC 1 cut(s) 93
PspN4I GGNNCC 1 cut(s) 259
PspOMI GGGCCC 1 cut(s) 257
PspPI GGNCC 3 cut(s) 248, 257, 258
PvuI CGATCG 1 cut(s) 39
PvuII CAGCTG 1 cut(s) 71
SaqAI TTAA 1 cut(s) 313
Sau3AI GATC 2 cut(s) 36, 240
Sau96I GGNCC 3 cut(s) 248, 257, 258
SchI GAGTC 1 cut(s) 94
SduI GDGCHC 2 cut(s) 261, 305
SetI ASST 2 cut(s) 73, 144
SfiI GGCCNNNNNGGCC 1 cut(s) 256
SsiI CCGC 2 cut(s) 137, 246
TaaI ACNGT 1 cut(s) 296
TaqI TCGA 2 cut(s) 22, 104
TfiI GAWTC 2 cut(s) 10, 24
Tru1I TTAA 1 cut(s) 313
Tru9I TTAA 1 cut(s) 313
TscAI CASTG 1 cut(s) 87
TseFI GTSAC 1 cut(s) 200
Tsp45I GTSAC 1 cut(s) 200
TspDTI ATGAA 1 cut(s) 201
TspGWI ACGGA 2 cut(s) 168, 219
TspRI CASTG 1 cut(s) 87
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.