RLG00000015736

F-box protein CPR30-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0001674
Physical Location & Seq
Reverse (-)
1101701 .. 1102855
1155 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000015736

Sequence Viewer

Length: 837 bp
ATGAAGAGGATTCTGAAGTCATCTGAGTCAAGTGCCTCAGCTGGCTCCTGCAATGGGCTGGTAGCATCATGTCACTCCCGTTCCTTCCTGCAACAGGAAAGCCTGTTTATATGGAACCCATCCACCGGATTCTTTAGGAAACTACCCAGCCGAGGTAGTAATACTTCTCAGAAATCCATTTTTGGGTTTGGGTATGTGTCTGCCACCGACGAATACAAGGTTGTGATAAATGCGGAGATCTTCTCATCCAAGACTGAATCATGGAAACGGATTGAAATCCCTTGCCTCCGTGTTGCGTCATCACGTGGTGTGCTTTTCGGTGAGGCACTCCATTGGCTATTCTATCCCGATGTTGAAAGGCAACAGGTTCCAAATCTGTACGCTTTCGATTTGGAGGAGGAGGAGTTTTCAGTAATGAAGCTGCCTAGTGCTCTTCAAACACACGGGCTTAAAAACTGTATTATATGCCAGGTTGGTGTTTCTTGTGAAGGGTGCTTGTATGTAATGGTCAATAAGGCGCGGTGGGATTGTGGTAAGTTGGCCTATTATGAAATTGACTTTTGGGTCATGAGAGAGTATGGCGACAGTGATTCCTGGACTAGATCGTTCGGCGTAAGGATTCCCGGTCAGCCTGAGCGGAGGGGCTGGTATCTTTATCTTCAAGAAGTTTCGGTTAGGGAAGCTAGTGCATTTGTGAGGAATAGATGTCCAAGGGAAGAAGAGAAGCTTGACATGTCTATAATTCATTATCGTAATGAAGAAGAGAACTCCGGCATGTATATGCTTGACAATGATGCACAAGACATGGTTGTGTATGAAGAGAGTCTGTTGTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like

Protein Analysis

279

Amino Acids

31.96

Weight (kDa)

5.43

Isoelectric Point (pI)

66.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_3 PF08268 12 - 203 1.7e-11 F-box associated beta propeller domain
FBA_1 PF07734 15 - 227 2.8e-17 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 563
AccBSI CCGCTC 1 cut(s) 637
AccII CGCG 1 cut(s) 520
AciI CCGC 3 cut(s) 233, 520, 637
AcuI CTGAAG 1 cut(s) 35
AcvI CACGTG 1 cut(s) 305
AdeI CACNNNGTG 1 cut(s) 308
AfaI GTAC 1 cut(s) 380
AfiI CCNNNNNNNGG 5 cut(s) 54, 94, 125, 152, 183
AflIII ACRYGT 1 cut(s) 732
AgsI TTSAA 4 cut(s) 275, 356, 437, 662
AjnI CCWGG 2 cut(s) 468, 593
AluBI AGCT 4 cut(s) 41, 421, 683, 727
AluI AGCT 4 cut(s) 41, 421, 683, 727
Alw21I GWGCWC 1 cut(s) 433
AoxI GGCC 1 cut(s) 540
ApeKI GCWGC 1 cut(s) 421
AspLEI GCGC 1 cut(s) 520
AsuC2I CCSGG 1 cut(s) 624
AsuHPI GGTGA 1 cut(s) 332
BarI GAAGNNNNNNTAC 2 cut(s) 148, 180
BbrPI CACGTG 1 cut(s) 305
Bbv12I GWGCWC 1 cut(s) 433
BbvCI CCTCAGC 1 cut(s) 37
BbvI GCAGC 1 cut(s) 408
BccI CCATC 1 cut(s) 127
BciT130I CCWGG 2 cut(s) 470, 595
BcnI CCSGG 1 cut(s) 624
BfaI CTAG 3 cut(s) 426, 600, 684
BglII AGATCT 1 cut(s) 237
BisI GCNGC 1 cut(s) 422
BlsI GCNGC 1 cut(s) 423
Bme1390I CCNGG 3 cut(s) 470, 595, 624
BmiI GGNNCC 3 cut(s) 46, 116, 369
BmrFI CCNGG 3 cut(s) 470, 595, 624
BmsI GCATC 2 cut(s) 74, 784
BplI GAGNNNNNCTC 2 cut(s) 227, 259
Bpu10I CCTNAGC 2 cut(s) 37, 633
BpuMI CCSGG 1 cut(s) 624
BsaAI YACGTR 1 cut(s) 305
BsaBI GATNNNNATC 1 cut(s) 275
BsaJI CCNNGG 2 cut(s) 151, 710
BsaWI WCCGGW 1 cut(s) 125
BsaXI ACNNNNNCTCC 2 cut(s) 389, 419
Bsc4I CCNNNNNNNGG 5 cut(s) 54, 94, 125, 152, 183
Bse3DI GCAATG 1 cut(s) 58
Bse8I GATNNNNATC 1 cut(s) 275
BseBI CCWGG 2 cut(s) 470, 595
BseDI CCNNGG 2 cut(s) 151, 710
BseGI GGATG 2 cut(s) 119, 245
BseJI GATNNNNATC 1 cut(s) 275
BseLI CCNNNNNNNGG 5 cut(s) 54, 94, 125, 152, 183
BseMI GCAATG 1 cut(s) 58
BseMII CTCAG 4 cut(s) 15, 51, 182, 624
BseRI GAGGAG 3 cut(s) 410, 413, 416
BseXI GCAGC 1 cut(s) 408
BseYI CCCAGC 1 cut(s) 146
Bsh1236I CGCG 1 cut(s) 520
BshFI GGCC 1 cut(s) 542
BsiHKAI GWGCWC 1 cut(s) 433
BsiSI CCGG 3 cut(s) 126, 624, 771
BslI CCNNNNNNNGG 5 cut(s) 54, 94, 125, 152, 183
BsnI GGCC 1 cut(s) 542
Bsp1286I GDGCHC 1 cut(s) 433
Bsp143I GATC 2 cut(s) 237, 602
BspACI CCGC 3 cut(s) 233, 520, 637
BspANI GGCC 1 cut(s) 542
BspCNI CTCAG 4 cut(s) 16, 50, 181, 625
BspFNI CGCG 1 cut(s) 520
BspHI TCATGA 1 cut(s) 567
BspLI GGNNCC 3 cut(s) 46, 116, 369
BspQI GCTCTTC 1 cut(s) 438
BsrBI CCGCTC 1 cut(s) 637
BsrDI GCAATG 1 cut(s) 58
BssECI CCNNGG 2 cut(s) 151, 710
BssMI GATC 2 cut(s) 237, 602
BssT1I CCWWGG 1 cut(s) 710
Bst2UI CCWGG 2 cut(s) 470, 595
Bst4CI ACNGT 2 cut(s) 458, 587
Bst6I CTCTTC 4 cut(s) 438, 714, 756, 813
BstBAI YACGTR 1 cut(s) 305
BstC8I GCNNGC 1 cut(s) 43
BstDEI CTNAG 4 cut(s) 24, 37, 168, 633
BstENI CCTNNNNNAGG 1 cut(s) 92
BstF5I GGATG 2 cut(s) 119, 245
BstFNI CGCG 1 cut(s) 520
BstHHI GCGC 1 cut(s) 520
BstKTI GATC 2 cut(s) 240, 605
BstMBI GATC 2 cut(s) 237, 602
BstNI CCWGG 2 cut(s) 470, 595
BstNSI RCATGY 2 cut(s) 736, 778
BstSCI CCNGG 3 cut(s) 468, 593, 622
BstUI CGCG 1 cut(s) 520
BstV1I GCAGC 1 cut(s) 408
BstX2I RGATCY 1 cut(s) 237
BstYI RGATCY 1 cut(s) 237
BsuRI GGCC 1 cut(s) 542
BtsCI GGATG 2 cut(s) 119, 245
BtsIMutI CAGTG 1 cut(s) 592
Cac8I GCNNGC 1 cut(s) 43
CciI TCATGA 1 cut(s) 567
CfoI GCGC 1 cut(s) 520
CseI GACGC 1 cut(s) 285
Csp6I GTAC 1 cut(s) 379
CviAII CATG 6 cut(s) 69, 261, 568, 733, 775, 805
CviQI GTAC 1 cut(s) 379
DdeI CTNAG 4 cut(s) 24, 37, 168, 633
DpnI GATC 2 cut(s) 239, 604
DpnII GATC 2 cut(s) 237, 602
DraIII CACNNNGTG 1 cut(s) 308
DrdI GACNNNNNNGTC 1 cut(s) 563
DseDI GACNNNNNNGTC 1 cut(s) 563
Eam1104I CTCTTC 4 cut(s) 438, 714, 756, 813
EarI CTCTTC 4 cut(s) 438, 714, 756, 813
Eco130I CCWWGG 1 cut(s) 710
Eco57I CTGAAG 1 cut(s) 35
Eco72I CACGTG 1 cut(s) 305
EcoNI CCTNNNNNAGG 1 cut(s) 92
EcoRII CCWGG 2 cut(s) 468, 593
EcoT14I CCWWGG 1 cut(s) 710
ErhI CCWWGG 1 cut(s) 710
FaeI CATG 6 cut(s) 72, 264, 571, 736, 778, 808
FalI AAGNNNNNCTT 2 cut(s) 711, 743
FatI CATG 6 cut(s) 68, 260, 567, 732, 774, 804
Fnu4HI GCNGC 1 cut(s) 422
FokI GGATG 2 cut(s) 106, 232
Fsp4HI GCNGC 1 cut(s) 422
FspBI CTAG 3 cut(s) 426, 600, 684
GlaI GCGC 1 cut(s) 519
GluI GCNGC 1 cut(s) 422
GsaI CCCAGC 1 cut(s) 150
HaeIII GGCC 1 cut(s) 542
HapII CCGG 3 cut(s) 126, 624, 771
HgaI GACGC 1 cut(s) 285
HhaI GCGC 1 cut(s) 520
Hin1II CATG 6 cut(s) 72, 264, 571, 736, 778, 808
Hin6I GCGC 1 cut(s) 518
HinP1I GCGC 1 cut(s) 518
HindIII AAGCTT 1 cut(s) 725
HinfI GANTC 7 cut(s) 10, 26, 129, 257, 590, 619, 823
HpaII CCGG 3 cut(s) 126, 624, 771
HphI GGTGA 1 cut(s) 332
Hpy188I TCNGA 3 cut(s) 15, 25, 171
Hpy188III TCNNGA 3 cut(s) 347, 568, 662
Hpy99I CGWCG 1 cut(s) 212
HpyAV CCTTC 2 cut(s) 94, 482
HpyCH4III ACNGT 2 cut(s) 458, 587
HpyCH4IV ACGT 1 cut(s) 304
HpyCH4V TGCA 4 cut(s) 51, 91, 689, 797
HpyF3I CTNAG 4 cut(s) 24, 37, 168, 633
HpySE526I ACGT 1 cut(s) 304
Hsp92II CATG 6 cut(s) 72, 264, 571, 736, 778, 808
HspAI GCGC 1 cut(s) 518
Kzo9I GATC 2 cut(s) 237, 602
LguI GCTCTTC 1 cut(s) 438
LmnI GCTCC 1 cut(s) 50
Lsp1109I GCAGC 1 cut(s) 408
LweI GCATC 2 cut(s) 74, 784
MaeI CTAG 3 cut(s) 426, 600, 684
MaeII ACGT 1 cut(s) 304
MaeIII GTNAC 1 cut(s) 71
MalI GATC 2 cut(s) 239, 604
MbiI CCGCTC 1 cut(s) 637
MboI GATC 2 cut(s) 237, 602
MboII GAAGA 9 cut(s) 16, 232, 425, 650, 728, 731, 770, 773, 830
MflI RGATCY 1 cut(s) 237
MhlI GDGCHC 1 cut(s) 433
MluCI AATT 2 cut(s) 552, 741
MlyI GAGTC 2 cut(s) 35, 832
MnlI CCTC 9 cut(s) 46, 146, 296, 316, 388, 391, 394, 633, 690
MseI TTAA 2 cut(s) 450, 835
MslI CAYNNNNRTG 2 cut(s) 779, 809
MspA1I CMGCKG 1 cut(s) 41
MspI CCGG 3 cut(s) 126, 624, 771
MspR9I CCNGG 3 cut(s) 470, 595, 624
MvaI CCWGG 2 cut(s) 470, 595
MvnI CGCG 1 cut(s) 520
NciI CCSGG 1 cut(s) 624
NdeII GATC 2 cut(s) 237, 602
NlaIII CATG 6 cut(s) 72, 264, 571, 736, 778, 808
NlaIV GGNNCC 3 cut(s) 46, 116, 369
NmeAIII GCCGAG 1 cut(s) 176
NmuCI GTSAC 1 cut(s) 71
NspI RCATGY 2 cut(s) 736, 778
PagI TCATGA 1 cut(s) 567
PciI ACATGT 1 cut(s) 732
PciSI GCTCTTC 1 cut(s) 438
PfeI GAWTC 5 cut(s) 10, 129, 257, 590, 619
PfoI TCCNGGA 1 cut(s) 593
PkrI GCNGC 1 cut(s) 423
PleI GAGTC 2 cut(s) 34, 831
PmaCI CACGTG 1 cut(s) 305
PmlI CACGTG 1 cut(s) 305
PpsI GAGTC 2 cut(s) 34, 831
Ppu21I YACGTR 1 cut(s) 305
PscI ACATGT 1 cut(s) 732
Psp6I CCWGG 2 cut(s) 468, 593
PspCI CACGTG 1 cut(s) 305
PspFI CCCAGC 1 cut(s) 146
PspGI CCWGG 2 cut(s) 468, 593
PspN4I GGNNCC 3 cut(s) 46, 116, 369
PsuI RGATCY 1 cut(s) 237
PvuII CAGCTG 1 cut(s) 41
RsaI GTAC 1 cut(s) 380
RsaNI GTAC 1 cut(s) 379
RseI CAYNNNNRTG 2 cut(s) 779, 809
SapI GCTCTTC 1 cut(s) 438
SaqAI TTAA 2 cut(s) 450, 835
SatI GCNGC 1 cut(s) 422
Sau3AI GATC 2 cut(s) 237, 602
SchI GAGTC 2 cut(s) 35, 832
ScrFI CCNGG 3 cut(s) 470, 595, 624
SduI GDGCHC 1 cut(s) 433
SetI ASST 9 cut(s) 43, 157, 222, 307, 369, 423, 474, 685, 729
SfaNI GCATC 2 cut(s) 74, 784
SmiMI CAYNNNNRTG 2 cut(s) 779, 809
Sse9I AATT 2 cut(s) 552, 741
SsiI CCGC 3 cut(s) 233, 520, 637
SspMI CTAG 3 cut(s) 426, 600, 684
StyD4I CCNGG 3 cut(s) 468, 593, 622
StyI CCWWGG 1 cut(s) 710
TaaI ACNGT 2 cut(s) 458, 587
TaiI ACGT 1 cut(s) 307
TaqI TCGA 1 cut(s) 387
TasI AATT 2 cut(s) 552, 741
TfiI GAWTC 5 cut(s) 10, 129, 257, 590, 619
Tru1I TTAA 2 cut(s) 450, 835
Tru9I TTAA 2 cut(s) 450, 835
TscAI CASTG 1 cut(s) 592
TseFI GTSAC 1 cut(s) 71
TseI GCWGC 1 cut(s) 421
Tsp45I GTSAC 1 cut(s) 71
TspDTI ATGAA 6 cut(s) 17, 431, 564, 734, 771, 831
TspGWI ACGGA 2 cut(s) 278, 283
TspRI CASTG 1 cut(s) 592
XagI CCTNNNNNAGG 1 cut(s) 92
XceI RCATGY 2 cut(s) 736, 778
XspI CTAG 3 cut(s) 426, 600, 684
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.