AT5G61820

Stress up-regulated Nod 19

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0001567
Physical Location & Seq
Reverse (-)
24834300 .. 24836933
2634 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G61820.1

Sequence Viewer

Length: 1428 bp
ATGATGGCTCGTTACCACAGGAGATCGATGATCTTGTGCTTAGTTCTGCTCTCATTAAGCATATCGCCGAGCCAAGGCTTCCTAGGGACAGAGGAAAAGATCAAATCCGCTGTCTTTTACTCACCAAAACTTGTGATGAATCCAGGATCAGTTGCAAATCCTTACTTATTCGACATCGATTTCCCAAGAGGTCATATCGGCCTCAAAGCTTTCGATGCTGAAGTGGTTGACGAAGCGGGCAAACCCGTTCCTCTACACGAGACCTATCTCCACCATTGGATTGTCGAGCCATACTATGTACGTAAAGGTTCCAAGCTTCCACAGAGAGAAATGTTCAGGAATCATGGATTTTCCAGGGAAGATCCTGAAAGCAATCTTGATTCCAAGTCAGATATTATTCTTGTGAAAAATGGAGGGTTGTGCAGGAGTTTAACACTCAGACATTTCTTTGGTTTAGGATCAGAAACCCGCGAAACCTCGACGTATGTTCCTGATCCCTACGCTATTGAAATCGGTAATCCTGAGGAAACACCTGATGGTTATGAATTCAAATGGCTTCTTAACATTCACGCGATAGACACCAGAGGTGTGGAAGATAAGAAAGGATGCATAGAATGTTTGTGTGATCTGTATAATGTTACCATTGATGAGTATGGTCGAGCTATAAGGCCTGGATACAAAGGAGGTTTATACTGCTGCTATGATAAGACTCAATGTCGGGTGAAAAGCGGATTTGACAATGGGGAGAAAACAAGAACTCTGTATTTGAAGTATACCGTGAGATGGGTTGATTGGGACAGCTCGGTTTTGCCCGCTAAGGTTTATATTTTCGATGTTACAGATTCTTGGGAAAGATCAAAAGGAGATAGCCAAGAACATATTTGCCATGTGGAATACGAGGTGAAACCGTGCAAAACCAATGGCGATGGATGCGTTGACGTTAAGAAAAAGAGCTTAGTGATGCCATTTGATGGGTATATTGTCTACGGGGTAGCTCACCAGCACGCTGGTGGTATCGGTGGTGCTCTATACCGAGAGAACGGTGAAGGGATATGCGCTTCAATGCCGAAGTATGGCAATGGAGATGAACCTGGAAACGAAGCTGGTTACATTGTTGGAATGTCGTCTTGTTATCCAGCTGATCCAGTGAAAGTGAGCTATGGAGAGACATTGACTTTGGAATCTAATTACAGTAATGCCGTTGGTCATACCGGAGTTATGGGACTCTTTTACATCCTCGTTGCTCAGCAGCTGCCGGAACCAGATAGCTCCTTGCCTAATAAACAACATTTTGAGGCACCTGCGAGAAGCTTGAGCTTTTTAGCCATTTTTGCAGTGACGGTAGTTGTGGCTGTTGTGGTTTTAATAGCCGCCGTGATATACCGGAGACAGAAACGGGAAGATGGTTACCAATCACTTAGTACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SURNod19

Protein Analysis

475

Amino Acids

53.07

Weight (kDa)

5.99

Isoelectric Point (pI)

43.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SURNod19 PF07712 33 - 417 3.4e-176 Stress up-regulated Nod 19
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1309
Acc36I ACCTGC 1 cut(s) 1309
AccB1I GGYRCC 1 cut(s) 1297
AccB7I CCANNNNNTGG 1 cut(s) 971
AccI GTMKAC 2 cut(s) 773, 984
AccII CGCG 2 cut(s) 471, 572
AciI CCGC 6 cut(s) 108, 236, 469, 729, 813, 1371
AclWI GGATC 5 cut(s) 154, 356, 466, 488, 1136
AcsI RAATTY 1 cut(s) 545
AcuI CTGAAG 1 cut(s) 240
AfaI GTAC 2 cut(s) 300, 1423
AfiI CCNNNNNNNGG 4 cut(s) 74, 783, 971, 1073
AgsI TTSAA 4 cut(s) 509, 550, 769, 1062
AhdI GACNNNNNGTC 1 cut(s) 714
AjnI CCWGG 4 cut(s) 142, 353, 670, 1090
AleI CACNNNNGTG 1 cut(s) 1008
Alw21I GWGCWC 1 cut(s) 1027
Alw26I GTCTC 3 cut(s) 254, 1160, 1381
AlwI GGATC 5 cut(s) 154, 356, 466, 488, 1136
AlwNI CAGNNNCTG 1 cut(s) 1252
AoxI GGCC 2 cut(s) 199, 668
ApeKI GCWGC 3 cut(s) 696, 1249, 1252
ApoI RAATTY 1 cut(s) 545
ArsI GACNNNNNNTTYG 4 cut(s) 96, 128, 1159, 1191
AspA2I CCTAGG 1 cut(s) 82
AspLEI GCGC 1 cut(s) 1058
AsuHPI GGTGA 5 cut(s) 114, 733, 913, 989, 1055
AvrII CCTAGG 1 cut(s) 82
AxyI CCTNAGG 1 cut(s) 522
BanI GGYRCC 1 cut(s) 1297
BauI CACGAG 1 cut(s) 257
Bbv12I GWGCWC 1 cut(s) 1027
BbvI GCAGC 3 cut(s) 683, 1239, 1261
BccI CCATC 5 cut(s) 530, 777, 920, 965, 1397
BceAI ACGGC 2 cut(s) 1184, 1358
BciT130I CCWGG 4 cut(s) 144, 355, 672, 1092
BciVI GTATCC 1 cut(s) 668
BcoDI GTCTC 3 cut(s) 254, 1160, 1381
BfaI CTAG 1 cut(s) 83
BfuAI ACCTGC 1 cut(s) 1309
BfuI GTATCC 1 cut(s) 668
BisI GCNGC 4 cut(s) 697, 1250, 1253, 1371
BlnI CCTAGG 1 cut(s) 82
BlpI GCTNAGC 1 cut(s) 1245
BlsI GCNGC 4 cut(s) 698, 1251, 1254, 1372
BmcAI AGTACT 1 cut(s) 1423
Bme1390I CCNGG 4 cut(s) 144, 355, 672, 1092
BmeRI GACNNNNNGTC 1 cut(s) 714
BmiI GGNNCC 3 cut(s) 310, 1260, 1299
BmrFI CCNGG 4 cut(s) 144, 355, 672, 1092
BmsI GCATC 4 cut(s) 205, 596, 920, 951
Bpu10I CCTNAGC 1 cut(s) 816
Bpu1102I GCTNAGC 1 cut(s) 1245
BpuEI CTTGAG 1 cut(s) 1333
Bsa29I ATCGAT 2 cut(s) 26, 177
BsaAI YACGTR 1 cut(s) 302
BsaI GGTCTC 1 cut(s) 254
BsaJI CCNNGG 3 cut(s) 73, 82, 354
BsaWI WCCGGW 2 cut(s) 1211, 1383
Bsc4I CCNNNNNNNGG 4 cut(s) 74, 783, 971, 1073
Bse1I ACTGG 1 cut(s) 1145
Bse21I CCTNAGG 1 cut(s) 522
Bse3DI GCAATG 1 cut(s) 1084
BseBI CCWGG 4 cut(s) 144, 355, 672, 1092
BseCI ATCGAT 2 cut(s) 26, 177
BseDI CCNNGG 3 cut(s) 73, 82, 354
BseGI GGATG 3 cut(s) 611, 935, 1233
BseLI CCNNNNNNNGG 4 cut(s) 74, 783, 971, 1073
BseMI GCAATG 1 cut(s) 1084
BseMII CTCAG 3 cut(s) 451, 513, 1259
BseNI ACTGG 1 cut(s) 1145
BseXI GCAGC 3 cut(s) 683, 1239, 1261
BsgI GTGCAG 1 cut(s) 442
Bsh1236I CGCG 2 cut(s) 471, 572
BshFI GGCC 2 cut(s) 201, 670
BshNI GGYRCC 1 cut(s) 1297
BshVI ATCGAT 2 cut(s) 26, 177
BsiHKAI GWGCWC 1 cut(s) 1027
BsiSI CCGG 3 cut(s) 1212, 1256, 1384
BslFI GGGAC 3 cut(s) 100, 809, 1236
BslI CCNNNNNNNGG 4 cut(s) 74, 783, 971, 1073
BsmAI GTCTC 3 cut(s) 254, 1160, 1381
BsmFI GGGAC 3 cut(s) 100, 809, 1236
BsnI GGCC 2 cut(s) 201, 670
Bso31I GGTCTC 1 cut(s) 254
Bsp1286I GDGCHC 1 cut(s) 1027
Bsp1720I GCTNAGC 1 cut(s) 1245
BspACI CCGC 6 cut(s) 108, 236, 469, 729, 813, 1371
BspANI GGCC 2 cut(s) 201, 670
BspCNI CTCAG 3 cut(s) 450, 514, 1258
BspDI ATCGAT 2 cut(s) 26, 177
BspFNI CGCG 2 cut(s) 471, 572
BspLI GGNNCC 3 cut(s) 310, 1260, 1299
BspMI ACCTGC 1 cut(s) 1309
BspPI GGATC 5 cut(s) 154, 356, 466, 488, 1136
BspT107I GGYRCC 1 cut(s) 1297
BspTNI GGTCTC 1 cut(s) 254
BsrDI GCAATG 1 cut(s) 1084
BsrI ACTGG 1 cut(s) 1145
BssECI CCNNGG 3 cut(s) 73, 82, 354
BssNAI GTATAC 1 cut(s) 774
BssSI CACGAG 1 cut(s) 257
BssT1I CCWWGG 2 cut(s) 73, 82
Bst1107I GTATAC 1 cut(s) 774
Bst2BI CACGAG 1 cut(s) 257
Bst2UI CCWGG 4 cut(s) 144, 355, 672, 1092
Bst4CI ACNGT 5 cut(s) 778, 909, 1043, 1193, 1342
BstBAI YACGTR 1 cut(s) 302
BstC8I GCNNGC 3 cut(s) 238, 813, 1005
BstDEI CTNAG 7 cut(s) 40, 437, 522, 816, 955, 1245, 1418
BstEII GGTNACC 1 cut(s) 1406
BstF5I GGATG 3 cut(s) 611, 935, 1233
BstFNI CGCG 2 cut(s) 471, 572
BstHHI GCGC 1 cut(s) 1058
BstMAI GTCTC 3 cut(s) 254, 1160, 1381
BstMWI GCNNNNNNNGC 3 cut(s) 215, 930, 1331
BstNI CCWGG 4 cut(s) 144, 355, 672, 1092
BstPI GGTNACC 1 cut(s) 1406
BstSCI CCNGG 4 cut(s) 142, 353, 670, 1090
BstSNI TACGTA 1 cut(s) 302
BstUI CGCG 2 cut(s) 471, 572
BstV1I GCAGC 3 cut(s) 683, 1239, 1261
BstX2I RGATCY 1 cut(s) 361
BstXI CCANNNNNNTGG 2 cut(s) 589, 1007
BstYI RGATCY 1 cut(s) 361
BstZ17I GTATAC 1 cut(s) 774
Bsu15I ATCGAT 2 cut(s) 26, 177
Bsu36I CCTNAGG 1 cut(s) 522
BsuI GTATCC 1 cut(s) 668
BsuRI GGCC 2 cut(s) 201, 670
BsuTUI ATCGAT 2 cut(s) 26, 177
BtgZI GCGATG 1 cut(s) 939
BtsCI GGATG 3 cut(s) 611, 935, 1233
BtsI GCAGTG 1 cut(s) 1341
BtsIMutI CAGTG 2 cut(s) 1152, 1341
BveI ACCTGC 1 cut(s) 1309
Cac8I GCNNGC 3 cut(s) 238, 813, 1005
CaiI CAGNNNCTG 1 cut(s) 1252
CfoI GCGC 1 cut(s) 1058
ClaI ATCGAT 2 cut(s) 26, 177
Csp6I GTAC 2 cut(s) 299, 1422
CviAII CATG 2 cut(s) 344, 887
CviQI GTAC 2 cut(s) 299, 1422
DdeI CTNAG 7 cut(s) 40, 437, 522, 816, 955, 1245, 1418
DriI GACNNNNNGTC 1 cut(s) 714
Eam1105I GACNNNNNGTC 1 cut(s) 714
Eco105I TACGTA 1 cut(s) 302
Eco130I CCWWGG 2 cut(s) 73, 82
Eco147I AGGCCT 1 cut(s) 670
Eco31I GGTCTC 1 cut(s) 254
Eco57I CTGAAG 1 cut(s) 240
Eco81I CCTNAGG 1 cut(s) 522
Eco91I GGTNACC 1 cut(s) 1406
EcoO65I GGTNACC 1 cut(s) 1406
EcoRI GAATTC 1 cut(s) 545
EcoRII CCWGG 4 cut(s) 142, 353, 670, 1090
EcoT14I CCWWGG 2 cut(s) 73, 82
EcoT22I ATGCAT 1 cut(s) 611
ErhI CCWWGG 2 cut(s) 73, 82
FaeI CATG 2 cut(s) 347, 890
FaqI GGGAC 3 cut(s) 100, 809, 1236
FatI CATG 2 cut(s) 343, 886
FauI CCCGC 3 cut(s) 229, 476, 820
FblI GTMKAC 2 cut(s) 773, 984
Fnu4HI GCNGC 4 cut(s) 697, 1250, 1253, 1371
FokI GGATG 3 cut(s) 618, 942, 1220
Fsp4HI GCNGC 4 cut(s) 697, 1250, 1253, 1371
FspBI CTAG 1 cut(s) 83
GlaI GCGC 1 cut(s) 1057
GluI GCNGC 4 cut(s) 697, 1250, 1253, 1371
HaeIII GGCC 2 cut(s) 201, 670
HapII CCGG 3 cut(s) 1212, 1256, 1384
HhaI GCGC 1 cut(s) 1058
Hin1II CATG 2 cut(s) 347, 890
Hin6I GCGC 1 cut(s) 1056
HinP1I GCGC 1 cut(s) 1056
HincII GTYRAC 2 cut(s) 229, 937
HindII GTYRAC 2 cut(s) 229, 937
HindIII AAGCTT 3 cut(s) 207, 314, 1309
HinfI GANTC 7 cut(s) 139, 340, 380, 709, 842, 1181, 1224
HpaII CCGG 3 cut(s) 1212, 1256, 1384
HphI GGTGA 5 cut(s) 114, 733, 913, 989, 1055
Hpy166II GTNNAC 4 cut(s) 229, 774, 937, 985
Hpy188I TCNGA 3 cut(s) 391, 440, 463
Hpy188III TCNNGA 5 cut(s) 337, 365, 377, 491, 521
Hpy8I GTNNAC 4 cut(s) 229, 774, 937, 985
Hpy99I CGWCG 1 cut(s) 484
HpyAV CCTTC 1 cut(s) 1040
HpyCH4III ACNGT 5 cut(s) 778, 909, 1043, 1193, 1342
HpyCH4IV ACGT 3 cut(s) 301, 482, 939
HpyCH4V TGCA 5 cut(s) 155, 423, 609, 912, 1334
HpyF10VI GCNNNNNNNGC 3 cut(s) 215, 930, 1331
HpyF3I CTNAG 7 cut(s) 40, 437, 522, 816, 955, 1245, 1418
HpySE526I ACGT 3 cut(s) 301, 482, 939
Hsp92II CATG 2 cut(s) 347, 890
HspAI GCGC 1 cut(s) 1056
LmnI GCTCC 1 cut(s) 1274
Lsp1109I GCAGC 3 cut(s) 683, 1239, 1261
LweI GCATC 4 cut(s) 205, 596, 920, 951
MaeI CTAG 1 cut(s) 83
MaeII ACGT 3 cut(s) 301, 482, 939
MaeIII GTNAC 6 cut(s) 11, 637, 835, 1106, 1336, 1406
MboII GAAGA 3 cut(s) 371, 605, 1412
MflI RGATCY 1 cut(s) 361
MhlI GDGCHC 1 cut(s) 1027
MluCI AATT 2 cut(s) 545, 1186
MlyI GAGTC 2 cut(s) 703, 1218
MmeI TCCRAC 1 cut(s) 1096
Mph1103I ATGCAT 1 cut(s) 611
MseI TTAA 6 cut(s) 56, 431, 561, 942, 1364, 1426
MslI CAYNNNNRTG 1 cut(s) 1008
MspA1I CMGCKG 3 cut(s) 110, 1139, 1252
MspI CCGG 3 cut(s) 1212, 1256, 1384
MspR9I CCNGG 4 cut(s) 144, 355, 672, 1092
MvaI CCWGG 4 cut(s) 144, 355, 672, 1092
MvnI CGCG 2 cut(s) 471, 572
MwoI GCNNNNNNNGC 3 cut(s) 215, 930, 1331
NlaIII CATG 2 cut(s) 347, 890
NlaIV GGNNCC 3 cut(s) 310, 1260, 1299
NmeAIII GCCGAG 1 cut(s) 93
NmuCI GTSAC 1 cut(s) 1336
NsiI ATGCAT 1 cut(s) 611
OliI CACNNNNGTG 1 cut(s) 1008
PaqCI CACCTGC 1 cut(s) 1309
PceI AGGCCT 1 cut(s) 670
PfeI GAWTC 5 cut(s) 139, 340, 380, 842, 1181
PflMI CCANNNNNTGG 1 cut(s) 971
PfoI TCCNGGA 1 cut(s) 142
PkrI GCNGC 4 cut(s) 698, 1251, 1254, 1372
PleI GAGTC 2 cut(s) 703, 1218
PpsI GAGTC 2 cut(s) 703, 1218
Ppu21I YACGTR 1 cut(s) 302
Psp6I CCWGG 4 cut(s) 142, 353, 670, 1090
PspEI GGTNACC 1 cut(s) 1406
PspGI CCWGG 4 cut(s) 142, 353, 670, 1090
PspN4I GGNNCC 3 cut(s) 310, 1260, 1299
PstNI CAGNNNCTG 1 cut(s) 1252
PsuI RGATCY 1 cut(s) 361
PvuII CAGCTG 2 cut(s) 1139, 1252
RsaI GTAC 2 cut(s) 300, 1423
RsaNI GTAC 2 cut(s) 299, 1422
RseI CAYNNNNRTG 1 cut(s) 1008
SaqAI TTAA 6 cut(s) 56, 431, 561, 942, 1364, 1426
SatI GCNGC 4 cut(s) 697, 1250, 1253, 1371
ScaI AGTACT 1 cut(s) 1423
SchI GAGTC 2 cut(s) 703, 1218
ScrFI CCNGG 4 cut(s) 144, 355, 672, 1092
SduI GDGCHC 1 cut(s) 1027
SfaNI GCATC 4 cut(s) 205, 596, 920, 951
SmiMI CAYNNNNRTG 1 cut(s) 1008
SmlI CTYRAG 1 cut(s) 1312
SmoI CTYRAG 1 cut(s) 1312
SnaBI TACGTA 1 cut(s) 302
Sse9I AATT 2 cut(s) 545, 1186
SseBI AGGCCT 1 cut(s) 670
SsiI CCGC 6 cut(s) 108, 236, 469, 729, 813, 1371
SspMI CTAG 1 cut(s) 83
StuI AGGCCT 1 cut(s) 670
StyD4I CCNGG 4 cut(s) 142, 353, 670, 1090
StyI CCWWGG 2 cut(s) 73, 82
TaaI ACNGT 5 cut(s) 778, 909, 1043, 1193, 1342
TaiI ACGT 3 cut(s) 304, 485, 942
TaqI TCGA 8 cut(s) 26, 171, 177, 213, 285, 479, 658, 831
TasI AATT 2 cut(s) 545, 1186
TatI WGTACW 1 cut(s) 1421
TauI GCSGC 1 cut(s) 1373
TfiI GAWTC 5 cut(s) 139, 340, 380, 842, 1181
Tru1I TTAA 6 cut(s) 56, 431, 561, 942, 1364, 1426
Tru9I TTAA 6 cut(s) 56, 431, 561, 942, 1364, 1426
TscAI CASTG 2 cut(s) 1152, 1341
TseFI GTSAC 1 cut(s) 1336
TseI GCWGC 3 cut(s) 696, 1249, 1252
Tsp45I GTSAC 1 cut(s) 1336
TspDTI ATGAA 3 cut(s) 152, 558, 1101
TspRI CASTG 2 cut(s) 1152, 1341
Van91I CCANNNNNTGG 1 cut(s) 971
XapI RAATTY 1 cut(s) 545
XcmI CCANNNNNNNNNTGG 1 cut(s) 1007
XmaJI CCTAGG 1 cut(s) 82
XmiI GTMKAC 2 cut(s) 773, 984
XspI CTAG 1 cut(s) 83
ZrmI AGTACT 1 cut(s) 1423
Zsp2I ATGCAT 1 cut(s) 611
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.