Rroxscaffold_5G00354720

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0001567
Physical Location & Seq
Forward (+)
33246176 .. 33247303
1128 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00354720.1

Sequence Viewer

Length: 1002 bp
ATGGCACCTTGTCAAATTTTGGTTCTTTTGTTAGCTGTGCTAGTGCTGGGATTAAGCCTACCATGTTCAGATGCTATTCGGATCAATAAGTTTAAGACCAAGACTAGCGTTTATGTCTCCCCTGAGTTTGTGTTGGGACCAGGGTCAGTTGCAGTCAAGTATTTCTATAACATTCCCTTCCCAAGAGGTCATATTGCTATGAAGTATTTCAATGCTGAAGTGATCGATGAAGAAGGGAATCCTATTCCTCTTTATGATACTTATCTGCATCATTGGGTTCTTGAAAGATATTACTTGGAGTCAAGTGGTTTCGAGGATAATAAAGATCCGGAGTTTAAGATTGTGAGAAATAGTGGATTGTGCCAGAATAATGTTCTTGGTCAGTACTATGGACTCGGGTCAGAAACACGAAAGACAGATACACATGTACCGGATCCTTTTGGAATAGAGATTGGCAACCCTGCAGAGATTCCTGCTGGATATGAGGAGAGATGGATGCTCAATGTTCATGCTATTGATACTCGGGGTGCAGAGGATAGGATGGGATGCACTGAATGCAGGTGTGATCTGTATAATGTAACAAAAGATGGACAAGGCCAGCCGTTGAGCCCAGGGTACACAGGGGGTTTGCAGTGCTGTTATGATGGTACACAGTGCAGCGTAAAACAAGGCTATAATGGTGTCAAGAGAAGCCTCTACTTGAGATACACTGTGAAGTGGGTTGATTGGTCCGATTCCATTGTGCCTGTCAAGATTTATATCTTTGATGTCACTGATAGAACAAATCATTCATCAGGACCCTCTCTTAAACATGATTGCCGGATCGAATATAATGTTGAGCCTTGCAGTACTGTCGATACGGTAAATGATCAGTGCTTTGACAATCAATGGGCAAAGGTTACTATGCCAACTGGTGGCTATATCGTCTATGGTGTTGCCCATCAGCACACTGGGGGACGTGGCTCAACTCTGTATGGAGAGGTGCCTTTCTTCTACTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SURNod19

Protein Analysis

333

Amino Acids

37.41

Weight (kDa)

5.49

Isoelectric Point (pI)

35.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SURNod19 PF07712 32 - 327 2.5e-142 Stress up-regulated Nod 19
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 549
Acc36I ACCTGC 1 cut(s) 549
AccB1I GGYRCC 2 cut(s) 4, 982
AccB7I CCANNNNNTGG 1 cut(s) 914
AccIII TCCGGA 1 cut(s) 328
AclWI GGATC 5 cut(s) 89, 320, 428, 441, 830
AcsI RAATTY 1 cut(s) 15
AcuI CTGAAG 1 cut(s) 237
AfaI GTAC 5 cut(s) 386, 429, 617, 649, 850
AfiI CCNNNNNNNGG 1 cut(s) 914
AflIII ACRYGT 1 cut(s) 424
AgsI TTSAA 2 cut(s) 211, 284
AjiI CACGTC 1 cut(s) 959
AjnI CCWGG 2 cut(s) 139, 610
AluBI AGCT 1 cut(s) 35
AluI AGCT 1 cut(s) 35
Alw26I GTCTC 1 cut(s) 121
AlwI GGATC 5 cut(s) 89, 320, 428, 441, 830
Ama87I CYCGRG 2 cut(s) 395, 522
Aor13HI TCCGGA 1 cut(s) 328
AoxI GGCC 1 cut(s) 595
ApeKI GCWGC 1 cut(s) 657
ApoI RAATTY 1 cut(s) 15
Asp700I GAANNNNTTC 1 cut(s) 206
AspS9I GGNCC 3 cut(s) 137, 729, 797
AvaI CYCGRG 2 cut(s) 395, 522
AvaII GGWCC 3 cut(s) 137, 729, 797
BaeI ACNNNNGTAYC 4 cut(s) 411, 411, 444, 444
BamHI GGATCC 1 cut(s) 433
BanI GGYRCC 2 cut(s) 4, 982
BanII GRGCYC 1 cut(s) 611
BbvI GCAGC 1 cut(s) 669
BccI CCATC 5 cut(s) 486, 535, 581, 638, 948
BceAI ACGGC 1 cut(s) 586
BcgI CGANNNNNNTGC 2 cut(s) 835, 869
BciT130I CCWGG 2 cut(s) 141, 612
BclI TGATCA 1 cut(s) 868
BcoDI GTCTC 1 cut(s) 121
BfaI CTAG 2 cut(s) 41, 105
BfmI CTRYAG 1 cut(s) 462
BfuAI ACCTGC 1 cut(s) 549
BisI GCNGC 1 cut(s) 658
BlsI GCNGC 1 cut(s) 659
BmcAI AGTACT 2 cut(s) 386, 850
Bme1390I CCNGG 2 cut(s) 141, 612
Bme18I GGWCC 3 cut(s) 137, 729, 797
BmeT110I CYCGRG 2 cut(s) 395, 522
BmgBI CACGTC 1 cut(s) 959
BmgT120I GGNCC 3 cut(s) 137, 729, 797
BmiI GGNNCC 5 cut(s) 6, 138, 435, 799, 984
BmrFI CCNGG 2 cut(s) 141, 612
BmrI ACTGGG 1 cut(s) 960
BmsI GCATC 4 cut(s) 61, 277, 486, 536
BmuI ACTGGG 1 cut(s) 960
BoxI GACNNNNGTC 2 cut(s) 142, 397
BpuEI CTTGAG 1 cut(s) 721
Bsa29I ATCGAT 1 cut(s) 225
BsaBI GATNNNNATC 2 cut(s) 261, 758
BsaJI CCNNGG 3 cut(s) 140, 610, 611
BsaWI WCCGGW 2 cut(s) 328, 430
Bsc4I CCNNNNNNNGG 1 cut(s) 914
Bse1I ACTGG 2 cut(s) 916, 955
Bse8I GATNNNNATC 2 cut(s) 261, 758
BseAI TCCGGA 1 cut(s) 328
BseBI CCWGG 2 cut(s) 141, 612
BseCI ATCGAT 1 cut(s) 225
BseDI CCNNGG 3 cut(s) 140, 610, 611
BseGI GGATG 3 cut(s) 501, 546, 551
BseJI GATNNNNATC 2 cut(s) 261, 758
BseLI CCNNNNNNNGG 1 cut(s) 914
BseMII CTCAG 1 cut(s) 114
BseNI ACTGG 2 cut(s) 916, 955
BseRI GAGGAG 1 cut(s) 500
BseXI GCAGC 1 cut(s) 669
BseYI CCCAGC 1 cut(s) 46
BsgI GTGCAG 2 cut(s) 549, 676
BshFI GGCC 1 cut(s) 597
BshNI GGYRCC 2 cut(s) 4, 982
BshVI ATCGAT 1 cut(s) 225
BsiHKCI CYCGRG 2 cut(s) 395, 522
BsiSI CCGG 3 cut(s) 329, 431, 820
BslFI GGGAC 2 cut(s) 150, 969
BslI CCNNNNNNNGG 1 cut(s) 914
BsmAI GTCTC 1 cut(s) 121
BsmFI GGGAC 2 cut(s) 150, 969
BsmI GAATGC 1 cut(s) 560
BsnI GGCC 1 cut(s) 597
BsoBI CYCGRG 2 cut(s) 395, 522
Bsp1286I GDGCHC 1 cut(s) 611
Bsp13I TCCGGA 1 cut(s) 328
Bsp143I GATC 7 cut(s) 81, 222, 325, 433, 565, 822, 868
BspANI GGCC 1 cut(s) 597
BspCNI CTCAG 1 cut(s) 115
BspDI ATCGAT 1 cut(s) 225
BspEI TCCGGA 1 cut(s) 328
BspLI GGNNCC 5 cut(s) 6, 138, 435, 799, 984
BspMAI CTGCAG 1 cut(s) 466
BspMI ACCTGC 1 cut(s) 549
BspPI GGATC 5 cut(s) 89, 320, 428, 441, 830
BspT107I GGYRCC 2 cut(s) 4, 982
BsrI ACTGG 2 cut(s) 916, 955
BssECI CCNNGG 3 cut(s) 140, 610, 611
BssMI GATC 7 cut(s) 81, 222, 325, 433, 565, 822, 868
Bst2UI CCWGG 2 cut(s) 141, 612
Bst4CI ACNGT 4 cut(s) 654, 712, 853, 862
BstAPI GCANNNNNTGC 1 cut(s) 555
BstC8I GCNNGC 1 cut(s) 599
BstDEI CTNAG 1 cut(s) 123
BstF5I GGATG 3 cut(s) 501, 546, 551
BstKTI GATC 7 cut(s) 84, 225, 328, 436, 568, 825, 871
BstMAI GTCTC 1 cut(s) 121
BstMBI GATC 7 cut(s) 81, 222, 325, 433, 565, 822, 868
BstMWI GCNNNNNNNGC 1 cut(s) 555
BstNI CCWGG 2 cut(s) 141, 612
BstNSI RCATGY 1 cut(s) 428
BstPAI GACNNNNGTC 2 cut(s) 142, 397
BstSCI CCNGG 2 cut(s) 139, 610
BstSFI CTRYAG 1 cut(s) 462
BstV1I GCAGC 1 cut(s) 669
BstX2I RGATCY 2 cut(s) 325, 433
BstYI RGATCY 2 cut(s) 325, 433
Bsu15I ATCGAT 1 cut(s) 225
BsuRI GGCC 1 cut(s) 597
BsuTUI ATCGAT 1 cut(s) 225
BtrI CACGTC 1 cut(s) 959
BtsCI GGATG 3 cut(s) 501, 546, 551
BtsI GCAGTG 1 cut(s) 638
BtsIMutI CAGTG 7 cut(s) 549, 638, 659, 708, 771, 878, 948
BveI ACCTGC 1 cut(s) 549
Cac8I GCNNGC 1 cut(s) 599
Cfr13I GGNCC 3 cut(s) 137, 729, 797
ClaI ATCGAT 1 cut(s) 225
Csp6I GTAC 5 cut(s) 385, 428, 616, 648, 849
CviAII CATG 4 cut(s) 63, 425, 509, 812
CviQI GTAC 5 cut(s) 385, 428, 616, 648, 849
DdeI CTNAG 1 cut(s) 123
DpnI GATC 7 cut(s) 83, 224, 327, 435, 567, 824, 870
DpnII GATC 7 cut(s) 81, 222, 325, 433, 565, 822, 868
Eco24I GRGCYC 1 cut(s) 611
Eco47I GGWCC 3 cut(s) 137, 729, 797
Eco57I CTGAAG 1 cut(s) 237
Eco88I CYCGRG 2 cut(s) 395, 522
EcoO109I RGGNCCY 1 cut(s) 797
EcoRII CCWGG 2 cut(s) 139, 610
EcoT38I GRGCYC 1 cut(s) 611
FaeI CATG 4 cut(s) 66, 428, 512, 815
FaqI GGGAC 2 cut(s) 150, 969
FatI CATG 4 cut(s) 62, 424, 508, 811
FbaI TGATCA 1 cut(s) 868
Fnu4HI GCNGC 1 cut(s) 658
FokI GGATG 3 cut(s) 508, 553, 558
FriOI GRGCYC 1 cut(s) 611
Fsp4HI GCNGC 1 cut(s) 658
FspBI CTAG 2 cut(s) 41, 105
GluI GCNGC 1 cut(s) 658
GsaI CCCAGC 1 cut(s) 50
HaeIII GGCC 1 cut(s) 597
HapII CCGG 3 cut(s) 329, 431, 820
Hin1II CATG 4 cut(s) 66, 428, 512, 815
HinfI GANTC 5 cut(s) 238, 299, 393, 469, 734
HpaII CCGG 3 cut(s) 329, 431, 820
Hpy166II GTNNAC 2 cut(s) 618, 650
Hpy188I TCNGA 4 cut(s) 70, 81, 403, 733
Hpy188III TCNNGA 5 cut(s) 281, 329, 685, 751, 795
Hpy8I GTNNAC 2 cut(s) 618, 650
HpyAV CCTTC 2 cut(s) 187, 227
HpyCH4III ACNGT 4 cut(s) 654, 712, 853, 862
HpyCH4IV ACGT 1 cut(s) 958
HpyCH4V TGCA 9 cut(s) 152, 268, 464, 530, 549, 558, 631, 657, 846
HpyF10VI GCNNNNNNNGC 1 cut(s) 555
HpyF3I CTNAG 1 cut(s) 123
HpySE526I ACGT 1 cut(s) 958
Hsp92II CATG 4 cut(s) 66, 428, 512, 815
Kpn2I TCCGGA 1 cut(s) 328
Ksp22I TGATCA 1 cut(s) 868
Kzo9I GATC 7 cut(s) 81, 222, 325, 433, 565, 822, 868
Lsp1109I GCAGC 1 cut(s) 669
LweI GCATC 4 cut(s) 61, 277, 486, 536
MaeI CTAG 2 cut(s) 41, 105
MaeII ACGT 1 cut(s) 958
MaeIII GTNAC 3 cut(s) 577, 769, 898
MalI GATC 7 cut(s) 83, 224, 327, 435, 567, 824, 870
MboI GATC 7 cut(s) 81, 222, 325, 433, 565, 822, 868
MboII GAAGA 2 cut(s) 242, 982
MflI RGATCY 2 cut(s) 325, 433
MhlI GDGCHC 1 cut(s) 611
MluCI AATT 1 cut(s) 15
MlyI GAGTC 2 cut(s) 308, 387
MnlI CCTC 8 cut(s) 179, 258, 307, 478, 526, 704, 811, 973
MroI TCCGGA 1 cut(s) 328
MroXI GAANNNNTTC 1 cut(s) 206
MseI TTAA 4 cut(s) 53, 93, 336, 807
MspI CCGG 3 cut(s) 329, 431, 820
MspR9I CCNGG 2 cut(s) 141, 612
Mva1269I GAATGC 1 cut(s) 560
MvaI CCWGG 2 cut(s) 141, 612
MwoI GCNNNNNNNGC 1 cut(s) 555
NdeII GATC 7 cut(s) 81, 222, 325, 433, 565, 822, 868
NlaIII CATG 4 cut(s) 66, 428, 512, 815
NlaIV GGNNCC 5 cut(s) 6, 138, 435, 799, 984
NmuCI GTSAC 1 cut(s) 769
NspI RCATGY 1 cut(s) 428
PaqCI CACCTGC 1 cut(s) 549
PasI CCCWGGG 1 cut(s) 611
PciI ACATGT 1 cut(s) 424
PctI GAATGC 1 cut(s) 560
PdmI GAANNNNTTC 1 cut(s) 206
PfeI GAWTC 3 cut(s) 238, 469, 734
PflMI CCANNNNNTGG 1 cut(s) 914
PkrI GCNGC 1 cut(s) 659
PleI GAGTC 2 cut(s) 307, 387
PpsI GAGTC 2 cut(s) 307, 387
PpuMI RGGWCCY 1 cut(s) 797
PscI ACATGT 1 cut(s) 424
PshAI GACNNNNGTC 2 cut(s) 142, 397
Psp5II RGGWCCY 1 cut(s) 797
Psp6I CCWGG 2 cut(s) 139, 610
PspFI CCCAGC 1 cut(s) 46
PspGI CCWGG 2 cut(s) 139, 610
PspN4I GGNNCC 5 cut(s) 6, 138, 435, 799, 984
PspPI GGNCC 3 cut(s) 137, 729, 797
PspPPI RGGWCCY 1 cut(s) 797
PstI CTGCAG 1 cut(s) 466
PsuI RGATCY 2 cut(s) 325, 433
RsaI GTAC 5 cut(s) 386, 429, 617, 649, 850
RsaNI GTAC 5 cut(s) 385, 428, 616, 648, 849
SaqAI TTAA 4 cut(s) 53, 93, 336, 807
SatI GCNGC 1 cut(s) 658
Sau3AI GATC 7 cut(s) 81, 222, 325, 433, 565, 822, 868
Sau96I GGNCC 3 cut(s) 137, 729, 797
ScaI AGTACT 2 cut(s) 386, 850
SchI GAGTC 2 cut(s) 308, 387
ScrFI CCNGG 2 cut(s) 141, 612
SduI GDGCHC 1 cut(s) 611
SetI ASST 7 cut(s) 10, 37, 190, 563, 900, 961, 984
SfaNI GCATC 4 cut(s) 61, 277, 486, 536
SfcI CTRYAG 1 cut(s) 462
SinI GGWCC 3 cut(s) 137, 729, 797
SmlI CTYRAG 1 cut(s) 700
SmoI CTYRAG 1 cut(s) 700
Sse9I AATT 1 cut(s) 15
SspMI CTAG 2 cut(s) 41, 105
StyD4I CCNGG 2 cut(s) 139, 610
TaaI ACNGT 4 cut(s) 654, 712, 853, 862
TaiI ACGT 1 cut(s) 961
TaqI TCGA 4 cut(s) 225, 312, 825, 855
TasI AATT 1 cut(s) 15
TatI WGTACW 2 cut(s) 384, 848
TfiI GAWTC 3 cut(s) 238, 469, 734
Tru1I TTAA 4 cut(s) 53, 93, 336, 807
Tru9I TTAA 4 cut(s) 53, 93, 336, 807
TscAI CASTG 7 cut(s) 556, 638, 659, 715, 778, 878, 955
TseFI GTSAC 1 cut(s) 769
TseI GCWGC 1 cut(s) 657
Tsp45I GTSAC 1 cut(s) 769
TspDTI ATGAA 4 cut(s) 215, 243, 497, 780
TspRI CASTG 7 cut(s) 556, 638, 659, 715, 778, 878, 955
Van91I CCANNNNNTGG 1 cut(s) 914
VpaK11BI GGWCC 3 cut(s) 137, 729, 797
XapI RAATTY 1 cut(s) 15
XceI RCATGY 1 cut(s) 428
XcmI CCANNNNNNNNNTGG 1 cut(s) 947
XmnI GAANNNNTTC 1 cut(s) 206
XspI CTAG 2 cut(s) 41, 105
ZrmI AGTACT 2 cut(s) 386, 850
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.