Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8492735.1

Orthogroup ID

OG0001567

Physical Location & Seq

Genomic Coordinates Reverse (-)

844 .. 2537

Gene Structure 1694 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8492735.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ctgtataatgtaacaaaagatggatggggccagccgttgaggccagggtacacagggggtttgcactgctgttatgatggtacgaagtgcagcgtaaaacaaggctacaatggtgtcaagagaagcctctacttgagatacactgtgaagtgggttgattggtctgattctattgtgcctgtcaagatttatatctttgatgtcactgatagaacggatcattcaggaggaccgtctcttcaacatgattgccggaacgaatataatgttgagccttgcagtgttgttgatttggtaaatgatcaatgctttgacaatcaaagggcaatgattactatgccaactggtggttatatcgtctatggtgtagcccatcagcacactggggggcgcggctcaactctatatggagaggacggacgggttctatgttcatcagtaccaatatatgggcaaagcgaggaagtaggagacgaggctggttacattgtaggaatgtcaacttgctatccacatccgggctctgtcaaaataaaggatggggagactctggttgtgggatctaattacagcagctcgcggccgcacatcggagtcatgggcctcttctacattttggttgcagagcacctgccaaagtcctccttgctgagcttggactcttcactttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SURNod19

Protein Analysis

223

Amino Acids

24.45

Weight (kDa)

5.87

Isoelectric Point (pI)

34.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001567)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61820 AT5G61820
fragaria_vesca	FvH4_5g09784 FvH4_5g09790
malus_domestica	MD00G1075600.v1.1 MD00G1075700.v1.1 MD00G1129500.v1.1 MD14G1145500.v1.1 MD14G1145600.v1.1
prunus_persica	Prupe.5G139900_v2.0.a1
pyrus_communis	pycom06g11990 pycom14g12060
rosa_chinensis	RchiOBHm_Chr4g0410211 RchiOBHm_Chr7g0188461 RchiOBHm_Chr7g0188471
rosa_laevigata	RLG00000004693 RLG00000004694 RLG00000008444 RLG00000030736
rosa_multiflora	Rmu_co8347943.1_g000001 Rmu_co8368305.1_g000001 Rmu_co8492735.1_g000001 Rmu_sc0000365.1_g000007 Rmu_sc0004806.1_g000001 Rmu_sc0006329.1_g000004 Rmu_sc0016427.1_g000001 Rmu_sc0034815.1_g000001
rosa_roxburghii	Rroxscaffold_3G00266400 Rroxscaffold_3G00266410 Rroxscaffold_5G00354720 Rroxscaffold_5G00354790
rosa_rugosa	Rorug01G0024000 Rorug04G0101400 Rorug06G0490400 Rorug06G0490500
rosa_samantha	Rh4AG159600 Rh4BG158600 Rh4CG171500 Rh4DG154500 Rh7AG095300 Rh7BG096800 Rh7BG096900 Rh7CG097600 Rh7CG097700 Rh7DG096900 Rh7DG097000
rosa_wichuraiana	Rw1G002850 Rw4G013290 Rw7G008220 Rw7G008230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	639
Acc36I	ACCTGC	1 cut(s)	639
AccB7I	CCANNNNNTGG	2 cut(s)	347, 449
AccII	CGCG	2 cut(s)	393, 580
AciI	CCGC	3 cut(s)	393, 580, 584
AclWI	GGATC	2 cut(s)	225, 568
AcoI	YGGCCR	1 cut(s)	581
AfaI	GTAC	3 cut(s)	50, 82, 441
AfiI	CCNNNNNNNGG	4 cut(s)	347, 449, 518, 590
AgsI	TTSAA	1 cut(s)	242
AjnI	CCWGG	1 cut(s)	43
AluBI	AGCT	2 cut(s)	576, 654
AluI	AGCT	2 cut(s)	576, 654
Alw21I	GWGCWC	1 cut(s)	630
Alw26I	GTCTC	3 cut(s)	240, 465, 539
AlwI	GGATC	2 cut(s)	225, 568
AoxI	GGCC	4 cut(s)	28, 41, 581, 601
ApeKI	GCWGC	2 cut(s)	90, 573
AspLEI	GCGC	1 cut(s)	393
AspS9I	GGNCC	3 cut(s)	28, 230, 601
AsuC2I	CCSGG	1 cut(s)	519
AvaII	GGWCC	1 cut(s)	230
BanII	GRGCYC	1 cut(s)	524
Bbv12I	GWGCWC	1 cut(s)	630
BbvI	GCAGC	2 cut(s)	102, 585
BccI	CCATC	5 cut(s)	14, 18, 71, 381, 533
BceAI	ACGGC	1 cut(s)	19
BciT130I	CCWGG	1 cut(s)	45
BclI	TGATCA	1 cut(s)	301
BcnI	CCSGG	1 cut(s)	519
BcoDI	GTCTC	3 cut(s)	240, 465, 539
BfuAI	ACCTGC	1 cut(s)	639
BglI	GCCNNNNNGGC	1 cut(s)	40
BisI	GCNGC	5 cut(s)	91, 394, 574, 581, 584
BlpI	GCTNAGC	1 cut(s)	650
BlsI	GCNGC	5 cut(s)	92, 395, 575, 582, 585
Bme1390I	CCNGG	2 cut(s)	45, 519
Bme18I	GGWCC	1 cut(s)	230
BmgT120I	GGNCC	3 cut(s)	28, 230, 601
BmiI	GGNNCC	1 cut(s)	29
BmrFI	CCNGG	2 cut(s)	45, 519
BmrI	ACTGGG	1 cut(s)	393
BmuI	ACTGGG	1 cut(s)	393
Bpu1102I	GCTNAGC	1 cut(s)	650
BpuEI	CTTGAG	1 cut(s)	154
BpuMI	CCSGG	1 cut(s)	519
BsaBI	GATNNNNATC	1 cut(s)	191
BsaJI	CCNNGG	1 cut(s)	44
Bsc4I	CCNNNNNNNGG	4 cut(s)	347, 449, 518, 590
Bse1I	ACTGG	2 cut(s)	349, 388
Bse3DI	GCAATG	1 cut(s)	333
Bse8I	GATNNNNATC	1 cut(s)	191
BseBI	CCWGG	1 cut(s)	45
BseDI	CCNNGG	1 cut(s)	44
BseGI	GGATG	3 cut(s)	29, 514, 544
BseJI	GATNNNNATC	1 cut(s)	191
BseLI	CCNNNNNNNGG	4 cut(s)	347, 449, 518, 590
BseMI	GCAATG	1 cut(s)	333
BseMII	CTCAG	1 cut(s)	641
BseNI	ACTGG	2 cut(s)	349, 388
BseX3I	CGGCCG	1 cut(s)	581
BseXI	GCAGC	2 cut(s)	102, 585
BsgI	GTGCAG	1 cut(s)	109
Bsh1236I	CGCG	2 cut(s)	393, 580
Bsh1285I	CGRYCG	1 cut(s)	584
BshFI	GGCC	4 cut(s)	30, 43, 583, 603
BsiEI	CGRYCG	1 cut(s)	584
BsiHKAI	GWGCWC	1 cut(s)	630
BsiSI	CCGG	2 cut(s)	253, 518
BslI	CCNNNNNNNGG	4 cut(s)	347, 449, 518, 590
BsmAI	GTCTC	3 cut(s)	240, 465, 539
BsmBI	CGTCTC	2 cut(s)	240, 465
BsnI	GGCC	4 cut(s)	30, 43, 583, 603
Bsp1286I	GDGCHC	2 cut(s)	524, 630
Bsp143I	GATC	3 cut(s)	217, 301, 560
Bsp1720I	GCTNAGC	1 cut(s)	650
BspACI	CCGC	3 cut(s)	393, 580, 584
BspANI	GGCC	4 cut(s)	30, 43, 583, 603
BspCNI	CTCAG	1 cut(s)	642
BspFNI	CGCG	2 cut(s)	393, 580
BspLI	GGNNCC	1 cut(s)	29
BspMI	ACCTGC	1 cut(s)	639
BspPI	GGATC	2 cut(s)	225, 568
BsrDI	GCAATG	1 cut(s)	333
BsrI	ACTGG	2 cut(s)	349, 388
BssECI	CCNNGG	1 cut(s)	44
BssMI	GATC	3 cut(s)	217, 301, 560
Bst2UI	CCWGG	1 cut(s)	45
Bst4CI	ACNGT	2 cut(s)	145, 234
Bst6I	CTCTTC	3 cut(s)	243, 611, 667
BstC8I	GCNNGC	2 cut(s)	32, 578
BstDEI	CTNAG	1 cut(s)	650
BstF5I	GGATG	3 cut(s)	29, 514, 544
BstFNI	CGCG	2 cut(s)	393, 580
BstHHI	GCGC	1 cut(s)	393
BstKTI	GATC	3 cut(s)	220, 304, 563
BstMAI	GTCTC	3 cut(s)	240, 465, 539
BstMBI	GATC	3 cut(s)	217, 301, 560
BstMCI	CGRYCG	1 cut(s)	584
BstMWI	GCNNNNNNNGC	1 cut(s)	40
BstNI	CCWGG	1 cut(s)	45
BstSCI	CCNGG	2 cut(s)	43, 517
BstUI	CGCG	2 cut(s)	393, 580
BstV1I	GCAGC	2 cut(s)	102, 585
BstX2I	RGATCY	1 cut(s)	560
BstYI	RGATCY	1 cut(s)	560
BstZI	CGGCCG	1 cut(s)	581
BsuRI	GGCC	4 cut(s)	30, 43, 583, 603
BtsCI	GGATG	3 cut(s)	29, 514, 544
BtsI	GCAGTG	2 cut(s)	64, 286
BtsIMutI	CAGTG	5 cut(s)	64, 141, 204, 286, 381
BveI	ACCTGC	1 cut(s)	639
Cac8I	GCNNGC	2 cut(s)	32, 578
CciNI	GCGGCCGC	1 cut(s)	581
CfoI	GCGC	1 cut(s)	393
Cfr13I	GGNCC	3 cut(s)	28, 230, 601
Csp6I	GTAC	3 cut(s)	49, 81, 440
CviAII	CATG	2 cut(s)	245, 598
CviQI	GTAC	3 cut(s)	49, 81, 440
DdeI	CTNAG	1 cut(s)	650
DpnI	GATC	3 cut(s)	219, 303, 562
DpnII	GATC	3 cut(s)	217, 301, 560
EaeI	YGGCCR	1 cut(s)	581
EagI	CGGCCG	1 cut(s)	581
Eam1104I	CTCTTC	3 cut(s)	243, 611, 667
EarI	CTCTTC	3 cut(s)	243, 611, 667
EclXI	CGGCCG	1 cut(s)	581
Eco24I	GRGCYC	1 cut(s)	524
Eco47I	GGWCC	1 cut(s)	230
Eco52I	CGGCCG	1 cut(s)	581
EcoRII	CCWGG	1 cut(s)	43
EcoT38I	GRGCYC	1 cut(s)	524
Esp3I	CGTCTC	2 cut(s)	240, 465
FaeI	CATG	2 cut(s)	248, 601
FalI	AAGNNNNNCTT	2 cut(s)	629, 661
FatI	CATG	2 cut(s)	244, 597
FbaI	TGATCA	1 cut(s)	301
Fnu4HI	GCNGC	5 cut(s)	91, 394, 574, 581, 584
FokI	GGATG	3 cut(s)	36, 501, 551
FriOI	GRGCYC	1 cut(s)	524
Fsp4HI	GCNGC	5 cut(s)	91, 394, 574, 581, 584
GlaI	GCGC	1 cut(s)	392
GluI	GCNGC	5 cut(s)	91, 394, 574, 581, 584
HaeIII	GGCC	4 cut(s)	30, 43, 583, 603
HapII	CCGG	2 cut(s)	253, 518
HhaI	GCGC	1 cut(s)	393
Hin1II	CATG	2 cut(s)	248, 601
Hin6I	GCGC	1 cut(s)	391
HinP1I	GCGC	1 cut(s)	391
HincII	GTYRAC	1 cut(s)	501
HindII	GTYRAC	1 cut(s)	501
HinfI	GANTC	4 cut(s)	167, 547, 594, 659
HpaII	CCGG	2 cut(s)	253, 518
Hpy166II	GTNNAC	2 cut(s)	51, 501
Hpy188I	TCNGA	2 cut(s)	166, 593
Hpy188III	TCNNGA	3 cut(s)	118, 184, 225
Hpy8I	GTNNAC	2 cut(s)	51, 501
HpyCH4III	ACNGT	2 cut(s)	145, 234
HpyCH4V	TGCA	4 cut(s)	64, 90, 279, 623
HpyF10VI	GCNNNNNNNGC	1 cut(s)	40
HpyF3I	CTNAG	1 cut(s)	650
Hsp92II	CATG	2 cut(s)	248, 601
HspAI	GCGC	1 cut(s)	391
Ksp22I	TGATCA	1 cut(s)	301
Kzo9I	GATC	3 cut(s)	217, 301, 560
Lsp1109I	GCAGC	2 cut(s)	102, 585
MaeIII	GTNAC	3 cut(s)	10, 202, 482
MalI	GATC	3 cut(s)	219, 303, 562
MboI	GATC	3 cut(s)	217, 301, 560
MboII	GAAGA	3 cut(s)	230, 598, 654
MflI	RGATCY	1 cut(s)	560
MhlI	GDGCHC	2 cut(s)	524, 630
MluCI	AATT	1 cut(s)	565
MlyI	GAGTC	3 cut(s)	541, 603, 653
MnlI	CCTC	8 cut(s)	33, 137, 221, 406, 454, 469, 614, 652
MspI	CCGG	2 cut(s)	253, 518
MspR9I	CCNGG	2 cut(s)	45, 519
MvaI	CCWGG	1 cut(s)	45
MvnI	CGCG	2 cut(s)	393, 580
MwoI	GCNNNNNNNGC	1 cut(s)	40
NciI	CCSGG	1 cut(s)	519
NdeII	GATC	3 cut(s)	217, 301, 560
NlaIII	CATG	2 cut(s)	248, 601
NlaIV	GGNNCC	1 cut(s)	29
NmuCI	GTSAC	1 cut(s)	202
NotI	GCGGCCGC	1 cut(s)	581
PaqCI	CACCTGC	1 cut(s)	639
PfeI	GAWTC	1 cut(s)	167
PflMI	CCANNNNNTGG	2 cut(s)	347, 449
PkrI	GCNGC	5 cut(s)	92, 395, 575, 582, 585
PleI	GAGTC	3 cut(s)	541, 602, 653
PpsI	GAGTC	3 cut(s)	541, 602, 653
Psp6I	CCWGG	1 cut(s)	43
PspGI	CCWGG	1 cut(s)	43
PspN4I	GGNNCC	1 cut(s)	29
PspPI	GGNCC	3 cut(s)	28, 230, 601
PsuI	RGATCY	1 cut(s)	560
RsaI	GTAC	3 cut(s)	50, 82, 441
RsaNI	GTAC	3 cut(s)	49, 81, 440
SatI	GCNGC	5 cut(s)	91, 394, 574, 581, 584
Sau3AI	GATC	3 cut(s)	217, 301, 560
Sau96I	GGNCC	3 cut(s)	28, 230, 601
SchI	GAGTC	3 cut(s)	541, 603, 653
ScrFI	CCNGG	2 cut(s)	45, 519
SduI	GDGCHC	2 cut(s)	524, 630
SetI	ASST	3 cut(s)	578, 633, 656
SinI	GGWCC	1 cut(s)	230
SmlI	CTYRAG	1 cut(s)	133
SmoI	CTYRAG	1 cut(s)	133
Sse9I	AATT	1 cut(s)	565
SsiI	CCGC	3 cut(s)	393, 580, 584
StyD4I	CCNGG	2 cut(s)	43, 517
TaaI	ACNGT	2 cut(s)	145, 234
TasI	AATT	1 cut(s)	565
TauI	GCSGC	3 cut(s)	396, 583, 586
TfiI	GAWTC	1 cut(s)	167
TscAI	CASTG	5 cut(s)	71, 148, 211, 286, 388
TseFI	GTSAC	1 cut(s)	202
TseI	GCWGC	2 cut(s)	90, 573
Tsp45I	GTSAC	1 cut(s)	202
TspDTI	ATGAA	1 cut(s)	423
TspGWI	ACGGA	2 cut(s)	230, 432
TspRI	CASTG	5 cut(s)	71, 148, 211, 286, 388
Van91I	CCANNNNNTGG	2 cut(s)	347, 449
VpaK11BI	GGWCC	1 cut(s)	230
XcmI	CCANNNNNNNNNTGG	1 cut(s)	380

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.