Rh7CG097600

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0001567
Physical Location & Seq
Reverse (-)
7351218 .. 7354298
3081 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG097600.1

Sequence Viewer

Length: 1245 bp
ATGGCACCTTCTTTGGTTCTTTTGTTAGCTGTGCTAGTGCTGGGATTAAGCCTACCATGGTCAGATGCTATTCGGATCAATAAAGTTAAGACCAGGACTAGCGTTTATGTCTCCCCTAAGCTTGTGTTGGAACCAGGGTCAGTTGCAGACAAGTATTTCTATAACGTTAACTTCCCAAGAGGTCATATTGCTATCAAGTATTTCAATGCTGAAGTGTTCGATGAAGAAGGGAATCCTATTCCTCTTCACGAGACTTATCTGCATCATTGGGTTCTCGGAAGATATTATGGCAGGACAAGTTATGTGGAACCAGAGCAGATTGGTTTCGATGATATTGACGAATCAGATTTTCAGTTCGTGAGAAACAGTGGTTTGTGCCAGAATAATGTTCTTGGACAGTACTATGGACTCGGGTCAGAAACACGAAAGACAGACACACATGTACCGGATCCTTTTGGAATAGAGATTGGCAACCCTGCAGAGATTCCTACTGGGTATGAGGAGAGATGGATGCTCAATGTTCATGCTATTGATACTCGGGGCGCAGAGGATAGGTTGGGATGCACTGAATGCAGGTGTGATCTGTATAATGTAACAAAAGATGGACGAGGTCAGCCGTTGAGGCCAGGGTACACGGGGGGTTTGCACTGCTGTTATGATGGTACACGGTGCAGCGTAAAACAAGGCTATAATGGTGTCAAGAGAAGCCTCTACTTGAGATACACAGTGAAGTGGGTTGATTGGTCTGATTCTATTGTGCCGGTCAAGATTTATATCTTTGATGCCACTGATAGAACGGATCATTCTTCTCTTCAACATGATTGCCGGGTTGAATATAATGTTGAGCCTTGCAGTACTGTTGATACGGTAAATGATCAGTGTTTTGACAATCAGCAGGCAATCGTTACTATGCCAACTGGTGGTTATATCGTCTATGGTGTAGCCCATCAGCACACTGGGGGGCGCGGCTCAACTCTATATGGAGAGGATGGACGGGTTCTGTGTTCATCAATACCAATTTATGGACAAAGCGAGGAAGTTGGAGATGAGGCTGGTTACATTGTAGGAATGTCCACTTGCTATCCACATCCGGGCTCTGTCAAAATAAAGGATGGGGAGACTCTGGTTGTGGGATCTAATTACAGCAGCTCGCAGCCGCACACAGGAGTCATGGGTCTCTTCTACATTTTGGTTGCAGAGCACCTGCCAAAGTCCTCCTTTTTTAGCTTGGACCCTTCGCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SURNod19

Protein Analysis

414

Amino Acids

46.13

Weight (kDa)

5.29

Isoelectric Point (pI)

33.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SURNod19 PF07712 30 - 401 1.5e-182 Stress up-regulated Nod 19
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 564, 1212
Acc36I ACCTGC 2 cut(s) 564, 1212
AccB1I GGYRCC 1 cut(s) 4
AccB7I CCANNNNNTGG 2 cut(s) 920, 1022
AccII CGCG 1 cut(s) 966
AciI CCGC 2 cut(s) 966, 1157
AclI AACGTT 1 cut(s) 165
AclWI GGATC 5 cut(s) 83, 443, 456, 807, 1141
AcuI CTGAAG 1 cut(s) 231
AfaI GTAC 5 cut(s) 401, 444, 632, 664, 856
AfiI CCNNNNNNNGG 4 cut(s) 920, 1022, 1091, 1163
AflIII ACRYGT 1 cut(s) 439
AgsI TTSAA 3 cut(s) 205, 815, 833
AjnI CCWGG 3 cut(s) 92, 133, 625
AluBI AGCT 4 cut(s) 29, 121, 1149, 1227
AluI AGCT 4 cut(s) 29, 121, 1149, 1227
Alw21I GWGCWC 1 cut(s) 1203
Alw26I GTCTC 4 cut(s) 115, 245, 1112, 1181
AlwI GGATC 5 cut(s) 83, 443, 456, 807, 1141
Ama87I CYCGRG 2 cut(s) 410, 537
AoxI GGCC 1 cut(s) 623
ApeKI GCWGC 3 cut(s) 672, 1146, 1153
AspLEI GCGC 2 cut(s) 545, 966
AspS9I GGNCC 1 cut(s) 1231
AsuC2I CCSGG 2 cut(s) 827, 1092
AvaI CYCGRG 2 cut(s) 410, 537
AvaII GGWCC 1 cut(s) 1231
BaeI ACNNNNGTAYC 2 cut(s) 426, 459
BamHI GGATCC 1 cut(s) 448
BanI GGYRCC 1 cut(s) 4
BanII GRGCYC 1 cut(s) 1097
BauI CACGAG 1 cut(s) 248
Bbv12I GWGCWC 1 cut(s) 1203
BbvI GCAGC 3 cut(s) 684, 1158, 1165
BccI CCATC 6 cut(s) 501, 596, 653, 954, 983, 1106
BceAI ACGGC 1 cut(s) 601
BciT130I CCWGG 3 cut(s) 94, 135, 627
BclI TGATCA 1 cut(s) 874
BcnI CCSGG 2 cut(s) 827, 1092
BcoDI GTCTC 4 cut(s) 115, 245, 1112, 1181
BfaI CTAG 2 cut(s) 35, 99
BfmI CTRYAG 1 cut(s) 477
BfuAI ACCTGC 2 cut(s) 564, 1212
BglI GCCNNNNNGGC 1 cut(s) 622
BisI GCNGC 5 cut(s) 673, 967, 1147, 1154, 1157
BlsI GCNGC 5 cut(s) 674, 968, 1148, 1155, 1158
BmcAI AGTACT 2 cut(s) 401, 856
Bme1390I CCNGG 5 cut(s) 94, 135, 627, 827, 1092
Bme18I GGWCC 1 cut(s) 1231
BmeT110I CYCGRG 2 cut(s) 410, 537
BmgT120I GGNCC 1 cut(s) 1231
BmiI GGNNCC 5 cut(s) 6, 132, 309, 450, 1233
BmrFI CCNGG 5 cut(s) 94, 135, 627, 827, 1092
BmrI ACTGGG 2 cut(s) 501, 966
BmsI GCATC 5 cut(s) 55, 271, 501, 551, 772
BmuI ACTGGG 2 cut(s) 501, 966
BoxI GACNNNNGTC 1 cut(s) 412
Bpu10I CCTNAGC 1 cut(s) 117
BpuEI CTTGAG 1 cut(s) 736
BpuMI CCSGG 2 cut(s) 827, 1092
BsaBI GATNNNNATC 1 cut(s) 773
BsaI GGTCTC 1 cut(s) 1181
BsaJI CCNNGG 3 cut(s) 56, 134, 626
BsaWI WCCGGW 1 cut(s) 445
Bsc4I CCNNNNNNNGG 4 cut(s) 920, 1022, 1091, 1163
Bse118I RCCGGY 1 cut(s) 760
Bse1I ACTGG 3 cut(s) 496, 922, 961
Bse8I GATNNNNATC 1 cut(s) 773
BseBI CCWGG 3 cut(s) 94, 135, 627
BseDI CCNNGG 3 cut(s) 56, 134, 626
BseGI GGATG 5 cut(s) 516, 566, 994, 1087, 1117
BseJI GATNNNNATC 1 cut(s) 773
BseLI CCNNNNNNNGG 4 cut(s) 920, 1022, 1091, 1163
BseNI ACTGG 3 cut(s) 496, 922, 961
BseRI GAGGAG 1 cut(s) 515
BseXI GCAGC 3 cut(s) 684, 1158, 1165
BseYI CCCAGC 1 cut(s) 40
BsgI GTGCAG 1 cut(s) 691
Bsh1236I CGCG 1 cut(s) 966
BshFI GGCC 1 cut(s) 625
BshNI GGYRCC 1 cut(s) 4
BsiHKAI GWGCWC 1 cut(s) 1203
BsiHKCI CYCGRG 2 cut(s) 410, 537
BsiSI CCGG 4 cut(s) 446, 761, 826, 1091
BslI CCNNNNNNNGG 4 cut(s) 920, 1022, 1091, 1163
BsmAI GTCTC 4 cut(s) 115, 245, 1112, 1181
BsmI GAATGC 1 cut(s) 575
BsnI GGCC 1 cut(s) 625
Bso31I GGTCTC 1 cut(s) 1181
BsoBI CYCGRG 2 cut(s) 410, 537
Bsp1286I GDGCHC 2 cut(s) 1097, 1203
Bsp143I GATC 6 cut(s) 75, 448, 580, 799, 874, 1133
Bsp19I CCATGG 1 cut(s) 56
BspACI CCGC 2 cut(s) 966, 1157
BspANI GGCC 1 cut(s) 625
BspFNI CGCG 1 cut(s) 966
BspLI GGNNCC 5 cut(s) 6, 132, 309, 450, 1233
BspMAI CTGCAG 1 cut(s) 481
BspMI ACCTGC 2 cut(s) 564, 1212
BspPI GGATC 5 cut(s) 83, 443, 456, 807, 1141
BspT107I GGYRCC 1 cut(s) 4
BspTNI GGTCTC 1 cut(s) 1181
BsrFI RCCGGY 1 cut(s) 760
BsrI ACTGG 3 cut(s) 496, 922, 961
BssAI RCCGGY 1 cut(s) 760
BssECI CCNNGG 3 cut(s) 56, 134, 626
BssMI GATC 6 cut(s) 75, 448, 580, 799, 874, 1133
BssSI CACGAG 1 cut(s) 248
BssT1I CCWWGG 1 cut(s) 56
Bst2BI CACGAG 1 cut(s) 248
Bst2UI CCWGG 3 cut(s) 94, 135, 627
Bst4CI ACNGT 6 cut(s) 368, 399, 669, 727, 859, 868
Bst6I CTCTTC 3 cut(s) 249, 816, 1184
BstAPI GCANNNNNTGC 1 cut(s) 570
BstC8I GCNNGC 2 cut(s) 897, 1151
BstDEI CTNAG 1 cut(s) 117
BstDSI CCRYGG 1 cut(s) 56
BstF5I GGATG 5 cut(s) 516, 566, 994, 1087, 1117
BstFNI CGCG 1 cut(s) 966
BstHHI GCGC 2 cut(s) 545, 966
BstKTI GATC 6 cut(s) 78, 451, 583, 802, 877, 1136
BstMAI GTCTC 4 cut(s) 115, 245, 1112, 1181
BstMBI GATC 6 cut(s) 75, 448, 580, 799, 874, 1133
BstMWI GCNNNNNNNGC 2 cut(s) 570, 622
BstNI CCWGG 3 cut(s) 94, 135, 627
BstNSI RCATGY 1 cut(s) 443
BstPAI GACNNNNGTC 1 cut(s) 412
BstSCI CCNGG 5 cut(s) 92, 133, 625, 825, 1090
BstSFI CTRYAG 1 cut(s) 477
BstUI CGCG 1 cut(s) 966
BstV1I GCAGC 3 cut(s) 684, 1158, 1165
BstX2I RGATCY 2 cut(s) 448, 1133
BstYI RGATCY 2 cut(s) 448, 1133
BsuRI GGCC 1 cut(s) 625
BtgI CCRYGG 1 cut(s) 56
BtsCI GGATG 5 cut(s) 516, 566, 994, 1087, 1117
BtsI GCAGTG 1 cut(s) 646
BtsIMutI CAGTG 7 cut(s) 373, 564, 646, 732, 786, 884, 954
BveI ACCTGC 2 cut(s) 564, 1212
Cac8I GCNNGC 2 cut(s) 897, 1151
CfoI GCGC 2 cut(s) 545, 966
Cfr10I RCCGGY 1 cut(s) 760
Cfr13I GGNCC 1 cut(s) 1231
Csp6I GTAC 5 cut(s) 400, 443, 631, 663, 855
CspCI CAANNNNNGTGG 2 cut(s) 285, 320
CviAII CATG 5 cut(s) 57, 440, 524, 818, 1171
CviQI GTAC 5 cut(s) 400, 443, 631, 663, 855
DdeI CTNAG 1 cut(s) 117
DpnI GATC 6 cut(s) 77, 450, 582, 801, 876, 1135
DpnII GATC 6 cut(s) 75, 448, 580, 799, 874, 1133
Eam1104I CTCTTC 3 cut(s) 249, 816, 1184
EarI CTCTTC 3 cut(s) 249, 816, 1184
Eco130I CCWWGG 1 cut(s) 56
Eco24I GRGCYC 1 cut(s) 1097
Eco31I GGTCTC 1 cut(s) 1181
Eco47I GGWCC 1 cut(s) 1231
Eco57I CTGAAG 1 cut(s) 231
Eco88I CYCGRG 2 cut(s) 410, 537
EcoRII CCWGG 3 cut(s) 92, 133, 625
EcoT14I CCWWGG 1 cut(s) 56
EcoT38I GRGCYC 1 cut(s) 1097
ErhI CCWWGG 1 cut(s) 56
FaeI CATG 5 cut(s) 60, 443, 527, 821, 1174
FalI AAGNNNNNCTT 2 cut(s) 1202, 1234
FatI CATG 5 cut(s) 56, 439, 523, 817, 1170
FbaI TGATCA 1 cut(s) 874
Fnu4HI GCNGC 5 cut(s) 673, 967, 1147, 1154, 1157
FokI GGATG 5 cut(s) 523, 573, 1001, 1074, 1124
FriOI GRGCYC 1 cut(s) 1097
Fsp4HI GCNGC 5 cut(s) 673, 967, 1147, 1154, 1157
FspBI CTAG 2 cut(s) 35, 99
GlaI GCGC 2 cut(s) 544, 965
GluI GCNGC 5 cut(s) 673, 967, 1147, 1154, 1157
GsaI CCCAGC 1 cut(s) 44
HaeIII GGCC 1 cut(s) 625
HapII CCGG 4 cut(s) 446, 761, 826, 1091
HhaI GCGC 2 cut(s) 545, 966
Hin1II CATG 5 cut(s) 60, 443, 527, 821, 1174
Hin6I GCGC 2 cut(s) 543, 964
HinP1I GCGC 2 cut(s) 543, 964
HincII GTYRAC 1 cut(s) 169
HindII GTYRAC 1 cut(s) 169
HindIII AAGCTT 1 cut(s) 119
HinfI GANTC 7 cut(s) 232, 341, 408, 484, 749, 1120, 1167
HpaI GTTAAC 1 cut(s) 169
HpaII CCGG 4 cut(s) 446, 761, 826, 1091
Hpy166II GTNNAC 4 cut(s) 169, 633, 665, 1074
Hpy188I TCNGA 6 cut(s) 64, 75, 278, 346, 418, 748
Hpy188III TCNNGA 4 cut(s) 248, 358, 700, 766
Hpy8I GTNNAC 4 cut(s) 169, 633, 665, 1074
HpyAV CCTTC 3 cut(s) 18, 221, 1245
HpyCH4III ACNGT 6 cut(s) 368, 399, 669, 727, 859, 868
HpyCH4IV ACGT 1 cut(s) 165
HpyCH4V TGCA 9 cut(s) 146, 262, 479, 564, 573, 646, 672, 852, 1196
HpyF10VI GCNNNNNNNGC 2 cut(s) 570, 622
HpyF3I CTNAG 1 cut(s) 117
HpySE526I ACGT 1 cut(s) 165
Hsp92II CATG 5 cut(s) 60, 443, 527, 821, 1174
HspAI GCGC 2 cut(s) 543, 964
Ksp22I TGATCA 1 cut(s) 874
KspAI GTTAAC 1 cut(s) 169
Kzo9I GATC 6 cut(s) 75, 448, 580, 799, 874, 1133
Lsp1109I GCAGC 3 cut(s) 684, 1158, 1165
LweI GCATC 5 cut(s) 55, 271, 501, 551, 772
MaeI CTAG 2 cut(s) 35, 99
MaeII ACGT 1 cut(s) 165
MaeIII GTNAC 3 cut(s) 592, 904, 1055
MalI GATC 6 cut(s) 77, 450, 582, 801, 876, 1135
MboI GATC 6 cut(s) 75, 448, 580, 799, 874, 1133
MboII GAAGA 6 cut(s) 236, 236, 291, 798, 803, 1171
MflI RGATCY 2 cut(s) 448, 1133
MhlI GDGCHC 2 cut(s) 1097, 1203
MluCI AATT 2 cut(s) 1017, 1138
MlyI GAGTC 3 cut(s) 402, 1114, 1176
MmeI TCCRAC 2 cut(s) 108, 1021
MseI TTAA 3 cut(s) 47, 87, 168
MspI CCGG 4 cut(s) 446, 761, 826, 1091
MspR9I CCNGG 5 cut(s) 94, 135, 627, 827, 1092
Mva1269I GAATGC 1 cut(s) 575
MvaI CCWGG 3 cut(s) 94, 135, 627
MvnI CGCG 1 cut(s) 966
MwoI GCNNNNNNNGC 2 cut(s) 570, 622
NciI CCSGG 2 cut(s) 827, 1092
NcoI CCATGG 1 cut(s) 56
NdeII GATC 6 cut(s) 75, 448, 580, 799, 874, 1133
NlaIII CATG 5 cut(s) 60, 443, 527, 821, 1174
NlaIV GGNNCC 5 cut(s) 6, 132, 309, 450, 1233
NspI RCATGY 1 cut(s) 443
PaqCI CACCTGC 2 cut(s) 564, 1212
PciI ACATGT 1 cut(s) 439
PctI GAATGC 1 cut(s) 575
PfeI GAWTC 4 cut(s) 232, 341, 484, 749
PflFI GACNNNGTC 1 cut(s) 609
PflMI CCANNNNNTGG 2 cut(s) 920, 1022
PkrI GCNGC 5 cut(s) 674, 968, 1148, 1155, 1158
PleI GAGTC 3 cut(s) 402, 1114, 1175
PpsI GAGTC 3 cut(s) 402, 1114, 1175
PscI ACATGT 1 cut(s) 439
PshAI GACNNNNGTC 1 cut(s) 412
Psp1406I AACGTT 1 cut(s) 165
Psp6I CCWGG 3 cut(s) 92, 133, 625
PspFI CCCAGC 1 cut(s) 40
PspGI CCWGG 3 cut(s) 92, 133, 625
PspN4I GGNNCC 5 cut(s) 6, 132, 309, 450, 1233
PspPI GGNCC 1 cut(s) 1231
PstI CTGCAG 1 cut(s) 481
PsuI RGATCY 2 cut(s) 448, 1133
PsyI GACNNNGTC 1 cut(s) 609
RsaI GTAC 5 cut(s) 401, 444, 632, 664, 856
RsaNI GTAC 5 cut(s) 400, 443, 631, 663, 855
SaqAI TTAA 3 cut(s) 47, 87, 168
SatI GCNGC 5 cut(s) 673, 967, 1147, 1154, 1157
Sau3AI GATC 6 cut(s) 75, 448, 580, 799, 874, 1133
Sau96I GGNCC 1 cut(s) 1231
ScaI AGTACT 2 cut(s) 401, 856
SchI GAGTC 3 cut(s) 402, 1114, 1176
ScrFI CCNGG 5 cut(s) 94, 135, 627, 827, 1092
SduI GDGCHC 2 cut(s) 1097, 1203
SfaNI GCATC 5 cut(s) 55, 271, 501, 551, 772
SfcI CTRYAG 1 cut(s) 477
SinI GGWCC 1 cut(s) 1231
SmlI CTYRAG 1 cut(s) 715
SmoI CTYRAG 1 cut(s) 715
Sse9I AATT 2 cut(s) 1017, 1138
SsiI CCGC 2 cut(s) 966, 1157
SspMI CTAG 2 cut(s) 35, 99
StyD4I CCNGG 5 cut(s) 92, 133, 625, 825, 1090
StyI CCWWGG 1 cut(s) 56
TaaI ACNGT 6 cut(s) 368, 399, 669, 727, 859, 868
TaiI ACGT 1 cut(s) 168
TaqI TCGA 2 cut(s) 219, 327
TasI AATT 2 cut(s) 1017, 1138
TatI WGTACW 2 cut(s) 399, 854
TauI GCSGC 2 cut(s) 969, 1159
TfiI GAWTC 4 cut(s) 232, 341, 484, 749
Tru1I TTAA 3 cut(s) 47, 87, 168
Tru9I TTAA 3 cut(s) 47, 87, 168
TscAI CASTG 7 cut(s) 373, 571, 653, 732, 793, 884, 961
TseI GCWGC 3 cut(s) 672, 1146, 1153
TspDTI ATGAA 3 cut(s) 237, 512, 996
TspGWI ACGGA 1 cut(s) 812
TspRI CASTG 7 cut(s) 373, 571, 653, 732, 793, 884, 961
Tth111I GACNNNGTC 1 cut(s) 609
Van91I CCANNNNNTGG 2 cut(s) 920, 1022
VpaK11BI GGWCC 1 cut(s) 1231
XceI RCATGY 1 cut(s) 443
XcmI CCANNNNNNNNNTGG 1 cut(s) 953
XspI CTAG 2 cut(s) 35, 99
ZrmI AGTACT 2 cut(s) 401, 856
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.