MD14G1145500.v1.1

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr14
OG0001567
Physical Location & Seq
Reverse (-)
23835989 .. 23838741
2753 bp
Loading structure...
UTR
Exon/CDS
Intron
MD14G1145500.v1.1.491

Sequence Viewer

Length: 1341 bp
ATGATATATATATGTCTGTTTTGTTTCAAACAGATTGAAAGTCTCCAACTTTTCATCTCAGACTCCTCGTTTTATTCTGAAAAAATGGCAAGTTGTTATCAAGGTTGCGTGTTTGTGTTGGCTATGGTTGTATTGGCATTAAGCACACCATGCTCACATGCTCTTCGAATTGTCAAACCTAAGACAAGAACTAGTGTATTTGTCTCCCCTAAGTTTGTGCTGGAACCAGGATCAGTTGCAGACAAGAATTACTACGATGTCAACTTCCCGAGAGGTCATATTGCAATCAAGAGCTTCAATGGTGAAGTAATTGATGAGGAAGGTAATCCGATTCCCCTTCACGAAACTTATCTCCATCATTGGGTTGTCGGGAAGTATTATGGCCGGATAGGTTTTGTGGAGCCGGAGGACGCTCGTTTTGACGAGTTTCAAAGGTCGGATTTCGCTTTTGTGAGAAACAGTGGAGTGTGCCAGGGGGATACTAATGGACAGTACTTTGGAATTGGGTCCGAAACACGGAGAACAGATACACATGTTCCGGATCCATTTGGAATTGAAGTTGGGAATCCGGCAGTGGTTCCTGCTGGCTATGAGGAGAGATGGCTGCTCAATGTGCATGCCATTGATACACGGGGGGCGGAGAATGGGTTGGGATGCACCGAGTGCAGGTGTGATCTTTATAATGTGTCAACCGATTCTCGAGGCCAGCCTTTGAGGCCGGGGTACAAAGGAGGTTTGCGTTGTTGTTATGATGGTACACACTGCAGAGTAAAACAAGGCTTTAACGGTGTCAAGAGAAACCTCTACTTGAGATATACTGTGAAGTGGGTTGATTGGTCTGATTCTATCATTCCTGTCAAGATTTATATCTTCGATGTTACTGATAAAATGAATCGTTCAGCTGGACTTGCCATCGAACATGAGTGCCGGGTTGAATATGATGTCGAAGAGTCTTGCAGTGAGACTAGTGATGGGTGCATTGACAGCCAATCATCAGTGGTTACTATGCCGACTGGTGGTTATGTCGTCTATGGTGTAGCTCATCAGCACACAGGCGGGATCAGATCAACTCTATATGGAGAGGATGGACGGGTTCTGTGTTCGTCAATACCAATTTATGGAAAAGGGAAGGAAGCTGGAGATGAGGCTGGTTATATTGTAGGAATGTCCACTTGTTATCCTCAACCCGGCTCAGTCAAAATAAACGATGGGGAGACTCTGACTCTAGTATCTAATTACAGCAGCTCCCAGACACACACAGGAGTTATGGATCTCTTCTACGTTTTGGTTGCAGACTACCTCCCAAAGTCCTCTGTGCTTAGCTTGGACTCTACACTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SURNod19

Protein Analysis

447

Amino Acids

49.43

Weight (kDa)

5.42

Isoelectric Point (pI)

42.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SURNod19 PF07712 61 - 432 3.8e-184 Stress up-regulated Nod 19
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 681
AarI CACCTGC 1 cut(s) 657
Acc36I ACCTGC 1 cut(s) 657
AccB7I CCANNNNNTGG 1 cut(s) 1118
AccIII TCCGGA 1 cut(s) 538
AciI CCGC 2 cut(s) 638, 1056
AclWI GGATC 5 cut(s) 238, 536, 549, 1067, 1278
AcoI YGGCCR 1 cut(s) 382
AdeI CACNNNGTG 1 cut(s) 663
AfaI GTAC 3 cut(s) 494, 725, 757
AfiI CCNNNNNNNGG 6 cut(s) 361, 516, 666, 1016, 1118, 1187
AflIII ACRYGT 1 cut(s) 532
AgsI TTSAA 6 cut(s) 28, 38, 298, 431, 557, 935
AhlI ACTAGT 2 cut(s) 191, 965
AjnI CCWGG 2 cut(s) 226, 471
AluBI AGCT 6 cut(s) 294, 902, 1040, 1136, 1245, 1323
AluI AGCT 6 cut(s) 294, 902, 1040, 1136, 1245, 1323
Alw26I GTCTC 4 cut(s) 47, 208, 956, 1208
AlwI GGATC 5 cut(s) 238, 536, 549, 1067, 1278
Ama87I CYCGRG 2 cut(s) 268, 699
Aor13HI TCCGGA 1 cut(s) 538
AoxI GGCC 3 cut(s) 382, 703, 716
ApeKI GCWGC 2 cut(s) 604, 1242
ArsI GACNNNNNNTTYG 2 cut(s) 401, 433
AspS9I GGNCC 1 cut(s) 507
AsuC2I CCSGG 3 cut(s) 720, 929, 1188
AsuHPI GGTGA 1 cut(s) 314
AsuII TTCGAA 1 cut(s) 166
AvaI CYCGRG 2 cut(s) 268, 699
AvaII GGWCC 1 cut(s) 507
BaeI ACNNNNGTAYC 4 cut(s) 519, 552, 1212, 1245
BamHI GGATCC 1 cut(s) 541
BbvI GCAGC 2 cut(s) 591, 1254
BccI CCATC 7 cut(s) 363, 594, 746, 920, 965, 1079, 1202
BciT130I CCWGG 2 cut(s) 228, 473
BciVI GTATCC 1 cut(s) 472
BcnI CCSGG 3 cut(s) 720, 929, 1188
BcoDI GTCTC 4 cut(s) 47, 208, 956, 1208
BcuI ACTAGT 2 cut(s) 191, 965
BfaI CTAG 3 cut(s) 192, 966, 1226
BfmI CTRYAG 1 cut(s) 763
BfuAI ACCTGC 1 cut(s) 657
BfuI GTATCC 1 cut(s) 472
BglI GCCNNNNNGGC 1 cut(s) 715
BisI GCNGC 2 cut(s) 605, 1243
BlpI GCTNAGC 1 cut(s) 1319
BlsI GCNGC 2 cut(s) 606, 1244
BmcAI AGTACT 1 cut(s) 494
Bme1390I CCNGG 5 cut(s) 228, 473, 720, 929, 1188
Bme18I GGWCC 1 cut(s) 507
BmeT110I CYCGRG 2 cut(s) 268, 699
BmgT120I GGNCC 1 cut(s) 507
BmiI GGNNCC 5 cut(s) 225, 402, 508, 543, 579
BmrFI CCNGG 5 cut(s) 228, 473, 720, 929, 1188
BmsI GCATC 1 cut(s) 644
BpmI CTGGAG 1 cut(s) 1158
Bpu1102I GCTNAGC 1 cut(s) 1319
Bpu14I TTCGAA 1 cut(s) 166
BpuEI CTTGAG 1 cut(s) 829
BpuMI CCSGG 3 cut(s) 720, 929, 1188
BsaBI GATNNNNATC 1 cut(s) 866
BsaJI CCNNGG 2 cut(s) 472, 719
BsaWI WCCGGW 1 cut(s) 538
BsaXI ACNNNNNCTCC 4 cut(s) 632, 662, 1229, 1259
Bsc4I CCNNNNNNNGG 6 cut(s) 361, 516, 666, 1016, 1118, 1187
Bse1I ACTGG 1 cut(s) 1018
Bse8I GATNNNNATC 1 cut(s) 866
BseAI TCCGGA 1 cut(s) 538
BseBI CCWGG 2 cut(s) 228, 473
BseDI CCNNGG 2 cut(s) 472, 719
BseGI GGATG 2 cut(s) 659, 1090
BseJI GATNNNNATC 1 cut(s) 866
BseLI CCNNNNNNNGG 6 cut(s) 361, 516, 666, 1016, 1118, 1187
BseMII CTCAG 2 cut(s) 72, 1206
BseNI ACTGG 1 cut(s) 1018
BseRI GAGGAG 2 cut(s) 55, 608
BseXI GCAGC 2 cut(s) 591, 1254
BsgI GTGCAG 1 cut(s) 685
BshFI GGCC 3 cut(s) 384, 705, 718
BsiHKCI CYCGRG 2 cut(s) 268, 699
BsiSI CCGG 7 cut(s) 385, 404, 539, 569, 719, 928, 1188
BslI CCNNNNNNNGG 6 cut(s) 361, 516, 666, 1016, 1118, 1187
BsmAI GTCTC 4 cut(s) 47, 208, 956, 1208
BsnI GGCC 3 cut(s) 384, 705, 718
BsoBI CYCGRG 2 cut(s) 268, 699
Bsp119I TTCGAA 1 cut(s) 166
Bsp13I TCCGGA 1 cut(s) 538
Bsp143I GATC 6 cut(s) 230, 541, 673, 1059, 1064, 1270
Bsp1720I GCTNAGC 1 cut(s) 1319
BspACI CCGC 2 cut(s) 638, 1056
BspANI GGCC 3 cut(s) 384, 705, 718
BspCNI CTCAG 2 cut(s) 71, 1205
BspEI TCCGGA 1 cut(s) 538
BspLI GGNNCC 5 cut(s) 225, 402, 508, 543, 579
BspMAI CTGCAG 1 cut(s) 767
BspMI ACCTGC 1 cut(s) 657
BspPI GGATC 5 cut(s) 238, 536, 549, 1067, 1278
BspQI GCTCTTC 1 cut(s) 168
BspT104I TTCGAA 1 cut(s) 166
BsrI ACTGG 1 cut(s) 1018
BssECI CCNNGG 2 cut(s) 472, 719
BssMI GATC 6 cut(s) 230, 541, 673, 1059, 1064, 1270
Bst2UI CCWGG 2 cut(s) 228, 473
Bst4CI ACNGT 4 cut(s) 461, 492, 788, 820
Bst6I CTCTTC 3 cut(s) 168, 942, 1280
BstAPI GCANNNNNTGC 2 cut(s) 150, 663
BstBI TTCGAA 1 cut(s) 166
BstC8I GCNNGC 3 cut(s) 586, 618, 707
BstDEI CTNAG 5 cut(s) 58, 180, 210, 1192, 1319
BstF5I GGATG 2 cut(s) 659, 1090
BstKTI GATC 6 cut(s) 233, 544, 676, 1062, 1067, 1273
BstMAI GTCTC 4 cut(s) 47, 208, 956, 1208
BstMBI GATC 6 cut(s) 230, 541, 673, 1059, 1064, 1270
BstMWI GCNNNNNNNGC 6 cut(s) 150, 613, 663, 715, 908, 984
BstNI CCWGG 2 cut(s) 228, 473
BstNSI RCATGY 3 cut(s) 161, 536, 620
BstSCI CCNGG 5 cut(s) 226, 471, 718, 927, 1186
BstSFI CTRYAG 1 cut(s) 763
BstV1I GCAGC 2 cut(s) 591, 1254
BstX2I RGATCY 2 cut(s) 541, 1270
BstYI RGATCY 2 cut(s) 541, 1270
BsuI GTATCC 1 cut(s) 472
BsuRI GGCC 3 cut(s) 384, 705, 718
BtsCI GGATG 2 cut(s) 659, 1090
BtsI GCAGTG 3 cut(s) 579, 760, 964
BtsIMutI CAGTG 5 cut(s) 466, 579, 760, 964, 1002
BveI ACCTGC 1 cut(s) 657
Cac8I GCNNGC 3 cut(s) 586, 618, 707
Cfr13I GGNCC 1 cut(s) 507
CseI GACGC 1 cut(s) 419
Csp6I GTAC 3 cut(s) 493, 724, 756
CviAII CATG 5 cut(s) 150, 158, 533, 617, 920
CviQI GTAC 3 cut(s) 493, 724, 756
DdeI CTNAG 5 cut(s) 58, 180, 210, 1192, 1319
DpnI GATC 6 cut(s) 232, 543, 675, 1061, 1066, 1272
DpnII GATC 6 cut(s) 230, 541, 673, 1059, 1064, 1270
DraIII CACNNNGTG 1 cut(s) 663
EaeI YGGCCR 1 cut(s) 382
Eam1104I CTCTTC 3 cut(s) 168, 942, 1280
EarI CTCTTC 3 cut(s) 168, 942, 1280
EciI GGCGGA 1 cut(s) 653
Eco47I GGWCC 1 cut(s) 507
Eco88I CYCGRG 2 cut(s) 268, 699
EcoRII CCWGG 2 cut(s) 226, 471
FaeI CATG 5 cut(s) 153, 161, 536, 620, 923
FatI CATG 5 cut(s) 149, 157, 532, 616, 919
FauI CCCGC 1 cut(s) 1049
Fnu4HI GCNGC 2 cut(s) 605, 1243
FokI GGATG 2 cut(s) 666, 1097
Fsp4HI GCNGC 2 cut(s) 605, 1243
FspBI CTAG 3 cut(s) 192, 966, 1226
GluI GCNGC 2 cut(s) 605, 1243
GsuI CTGGAG 1 cut(s) 1158
HaeIII GGCC 3 cut(s) 384, 705, 718
HapII CCGG 7 cut(s) 385, 404, 539, 569, 719, 928, 1188
HgaI GACGC 1 cut(s) 419
Hin1II CATG 5 cut(s) 153, 161, 536, 620, 923
HincII GTYRAC 2 cut(s) 262, 690
HindII GTYRAC 2 cut(s) 262, 690
HpaII CCGG 7 cut(s) 385, 404, 539, 569, 719, 928, 1188
HphI GGTGA 1 cut(s) 314
Hpy166II GTNNAC 4 cut(s) 262, 690, 758, 1170
Hpy188I TCNGA 8 cut(s) 61, 79, 330, 439, 511, 841, 1064, 1221
Hpy188III TCNNGA 8 cut(s) 268, 289, 341, 370, 539, 699, 793, 859
Hpy8I GTNNAC 4 cut(s) 262, 690, 758, 1170
HpyAV CCTTC 3 cut(s) 314, 347, 1123
HpyCH4III ACNGT 4 cut(s) 461, 492, 788, 820
HpyCH4IV ACGT 1 cut(s) 1281
HpyCH4V TGCA 9 cut(s) 239, 284, 616, 657, 666, 765, 957, 978, 1292
HpyF10VI GCNNNNNNNGC 6 cut(s) 150, 613, 663, 715, 908, 984
HpyF3I CTNAG 5 cut(s) 58, 180, 210, 1192, 1319
HpySE526I ACGT 1 cut(s) 1281
Hsp92II CATG 5 cut(s) 153, 161, 536, 620, 923
Kpn2I TCCGGA 1 cut(s) 538
Kzo9I GATC 6 cut(s) 230, 541, 673, 1059, 1064, 1270
LguI GCTCTTC 1 cut(s) 168
LmnI GCTCC 2 cut(s) 400, 1250
Lsp1109I GCAGC 2 cut(s) 591, 1254
LweI GCATC 1 cut(s) 644
MaeI CTAG 3 cut(s) 192, 966, 1226
MaeII ACGT 1 cut(s) 1281
MaeIII GTNAC 2 cut(s) 877, 1000
MalI GATC 6 cut(s) 232, 543, 675, 1061, 1066, 1272
MboI GATC 6 cut(s) 230, 541, 673, 1059, 1064, 1270
MboII GAAGA 4 cut(s) 155, 862, 959, 1267
MflI RGATCY 2 cut(s) 541, 1270
MluCI AATT 7 cut(s) 168, 247, 309, 501, 552, 1113, 1234
MlyI GAGTC 5 cut(s) 56, 959, 1210, 1216, 1322
MmeI TCCRAC 2 cut(s) 70, 417
MroI TCCGGA 1 cut(s) 538
MseI TTAA 2 cut(s) 140, 783
MspA1I CMGCKG 1 cut(s) 902
MspI CCGG 7 cut(s) 385, 404, 539, 569, 719, 928, 1188
MspR9I CCNGG 5 cut(s) 228, 473, 720, 929, 1188
MvaI CCWGG 2 cut(s) 228, 473
MwoI GCNNNNNNNGC 6 cut(s) 150, 613, 663, 715, 908, 984
NciI CCSGG 3 cut(s) 720, 929, 1188
NdeII GATC 6 cut(s) 230, 541, 673, 1059, 1064, 1270
NlaIII CATG 5 cut(s) 153, 161, 536, 620, 923
NlaIV GGNNCC 5 cut(s) 225, 402, 508, 543, 579
NspI RCATGY 3 cut(s) 161, 536, 620
NspV TTCGAA 1 cut(s) 166
PaeI GCATGC 1 cut(s) 620
PaeR7I CTCGAG 1 cut(s) 699
PaqCI CACCTGC 1 cut(s) 657
PciI ACATGT 1 cut(s) 532
PciSI GCTCTTC 1 cut(s) 168
PfeI GAWTC 5 cut(s) 331, 565, 695, 842, 892
PflMI CCANNNNNTGG 1 cut(s) 1118
PkrI GCNGC 2 cut(s) 606, 1244
PleI GAGTC 5 cut(s) 56, 958, 1210, 1216, 1322
PpsI GAGTC 5 cut(s) 56, 958, 1210, 1216, 1322
PscI ACATGT 1 cut(s) 532
PsiI TTATAA 1 cut(s) 681
Psp6I CCWGG 2 cut(s) 226, 471
PspGI CCWGG 2 cut(s) 226, 471
PspN4I GGNNCC 5 cut(s) 225, 402, 508, 543, 579
PspPI GGNCC 1 cut(s) 507
PstI CTGCAG 1 cut(s) 767
PsuI RGATCY 2 cut(s) 541, 1270
PvuII CAGCTG 1 cut(s) 902
RsaI GTAC 3 cut(s) 494, 725, 757
RsaNI GTAC 3 cut(s) 493, 724, 756
SapI GCTCTTC 1 cut(s) 168
SaqAI TTAA 2 cut(s) 140, 783
SatI GCNGC 2 cut(s) 605, 1243
Sau3AI GATC 6 cut(s) 230, 541, 673, 1059, 1064, 1270
Sau96I GGNCC 1 cut(s) 507
ScaI AGTACT 1 cut(s) 494
SchI GAGTC 5 cut(s) 56, 959, 1210, 1216, 1322
ScrFI CCNGG 5 cut(s) 228, 473, 720, 929, 1188
SfaNI GCATC 1 cut(s) 644
SfcI CTRYAG 1 cut(s) 763
Sfr274I CTCGAG 1 cut(s) 699
SfuI TTCGAA 1 cut(s) 166
SinI GGWCC 1 cut(s) 507
SlaI CTCGAG 1 cut(s) 699
SmlI CTYRAG 2 cut(s) 699, 808
SmoI CTYRAG 2 cut(s) 699, 808
SpeI ACTAGT 2 cut(s) 191, 965
SphI GCATGC 1 cut(s) 620
Sse9I AATT 7 cut(s) 168, 247, 309, 501, 552, 1113, 1234
SsiI CCGC 2 cut(s) 638, 1056
SspMI CTAG 3 cut(s) 192, 966, 1226
StyD4I CCNGG 5 cut(s) 226, 471, 718, 927, 1186
TaaI ACNGT 4 cut(s) 461, 492, 788, 820
TaiI ACGT 1 cut(s) 1284
TaqI TCGA 5 cut(s) 166, 700, 873, 915, 945
TasI AATT 7 cut(s) 168, 247, 309, 501, 552, 1113, 1234
TatI WGTACW 1 cut(s) 492
TfiI GAWTC 5 cut(s) 331, 565, 695, 842, 892
Tru1I TTAA 2 cut(s) 140, 783
Tru9I TTAA 2 cut(s) 140, 783
TscAI CASTG 5 cut(s) 466, 579, 767, 964, 1002
TseI GCWGC 2 cut(s) 604, 1242
TspDTI ATGAA 2 cut(s) 43, 905
TspGWI ACGGA 1 cut(s) 532
TspRI CASTG 5 cut(s) 466, 579, 767, 964, 1002
Van91I CCANNNNNTGG 1 cut(s) 1118
VpaK11BI GGWCC 1 cut(s) 507
XceI RCATGY 3 cut(s) 161, 536, 620
XhoI CTCGAG 1 cut(s) 699
XspI CTAG 3 cut(s) 192, 966, 1226
ZrmI AGTACT 1 cut(s) 494
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.