Rroxscaffold_3G00266400

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0001567
Physical Location & Seq
Forward (+)
59682314 .. 59685914
3601 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00266400.1

Sequence Viewer

Length: 1338 bp
ATGAAAATTTTGACTCTAGATATCATCGTACCCACTTCTCTCTTGCTCTGGCTGAGCCACCTGGCAGAAAGAAAATGGCACCTCCTTGTCATAAGTTTGGTACTTTTGTTAGCTGTGCTAGTGCTGGGGTTAAGCCTACCATCTCCAGATGCCATTCGGATCAATAAGGTCAAGACCAGGACTAGTGTTTATGTCTCCCCTAAGTTTGTGTTGGAACCAGGGTCAGTTGCAGACAAGTATTTCTATAACATTCACTTCCCAAGAGGTCATATTGCTATGAAGTATTTCAATGCTGAAGTGATCGATGAAGAAGGGAATCCTATTCCTCTTCATGAGACTTATCTGCATCATTGGGTTATTGAAAGATATTATGCCCAGACAAGTTATGTGGAACCGGAGCTGAGTGGTTTCGAGGATATTAAAGATCCGGATTTTAAGATTGTGAGAAATAGTGGATTTTGCCAGAATAATGTTCTTGGTCAGTACTATGGACTCGGGTCAGAAACTAGAAAGACAGATACACATGTACCGGATCCTTTTGGAATAGAGATTGGCAACCCTGCAGAGATTCCTGCTGGATATGAGGAGAGATGGATGCTCAATGTGCATGCTATTGATACTCGGGGCTCAGAGGATAGGTTGGGATGCACTGAATGCAGGTGTGATCTGTATAATGTAACAAAAGATGAATGGGGCCAGCCGTTGAGGCCAGGGTACACAGGGGGTTTGCACTGCTGTTATGATGGTACAAAGTGTAGCGTAAAACAAGGCTACAATGGTGTCAAGAGAAGCCTCTACTTGAGATACACAGTGAAGTGGGTTGATTGGTCTGATTCTATTGTGCCTGTCAAGATTTATATCTTTGATGTCACTGATAGAACGGATCATTCAGGAGGACTGTCTCTTCAACATGATTGCCAGATCGAATATGATGTTGAGCCTTGCAGTACTGTTGATATGGTAAATGATCAATGCTTTGACAATCAAAGGGCAATGATTACTATGCCAACTGGTGGTTATATCGTATATGGTGTAGCCCATCAGCACACTGGGGGGCGTGGCTCATCTCTATATGGAGAGGACGGACGGGTTCTATGTTCATCAATACCAATATATGGGCAAAGCGAGGAAGTAGGAGACGAGGCTGGTTACATTGTAGGAATGTCAACTTGCTATCCACATCCGGGCTCTGTCAAAATAAAGGATGGGGAGACTCTGGTTGTGGGATCCAATTACAGCAGCTCGCGGCTGCACATCGGAGTCATGGGCCTCTTCTACATTTTGGTTGCAGAGCACCTGCCAAAGTCCTCCTTGCTTAGCTTGGACTGTTCACTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SURNod19

Protein Analysis

445

Amino Acids

49.86

Weight (kDa)

5.49

Isoelectric Point (pI)

38.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SURNod19 PF07712 58 - 432 9.6e-185 Stress up-regulated Nod 19
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 648, 1305
Acc36I ACCTGC 2 cut(s) 648, 1305
AccB1I GGYRCC 1 cut(s) 78
AccB7I CCANNNNNTGG 2 cut(s) 1013, 1115
AccII CGCG 1 cut(s) 1246
AccIII TCCGGA 1 cut(s) 427
AciI CCGC 1 cut(s) 1246
AclWI GGATC 7 cut(s) 167, 419, 527, 540, 891, 1221, 1234
AcsI RAATTY 1 cut(s) 6
AcuI CTGAAG 1 cut(s) 315
AfaI GTAC 7 cut(s) 30, 102, 485, 528, 716, 748, 949
AfiI CCNNNNNNNGG 3 cut(s) 1013, 1115, 1184
AflIII ACRYGT 1 cut(s) 523
AgsI TTSAA 3 cut(s) 289, 362, 908
AhlI ACTAGT 1 cut(s) 182
AjnI CCWGG 4 cut(s) 60, 176, 217, 709
AluBI AGCT 4 cut(s) 113, 400, 1242, 1320
AluI AGCT 4 cut(s) 113, 400, 1242, 1320
Alw21I GWGCWC 1 cut(s) 1296
Alw26I GTCTC 5 cut(s) 199, 329, 906, 1131, 1205
AlwI GGATC 7 cut(s) 167, 419, 527, 540, 891, 1221, 1234
Ama87I CYCGRG 2 cut(s) 494, 621
Aor13HI TCCGGA 1 cut(s) 427
AoxI GGCC 3 cut(s) 694, 707, 1267
ApeKI GCWGC 2 cut(s) 1239, 1249
ApoI RAATTY 1 cut(s) 6
Asp700I GAANNNNTTC 1 cut(s) 284
AspS9I GGNCC 2 cut(s) 694, 1267
AsuC2I CCSGG 1 cut(s) 1185
AvaI CYCGRG 2 cut(s) 494, 621
BaeI ACNNNNGTAYC 6 cut(s) 92, 125, 510, 510, 543, 543
BamHI GGATCC 2 cut(s) 532, 1226
BanI GGYRCC 1 cut(s) 78
BanII GRGCYC 2 cut(s) 629, 1190
Bbv12I GWGCWC 1 cut(s) 1296
BbvI GCAGC 2 cut(s) 1236, 1251
BccI CCATC 5 cut(s) 148, 585, 737, 1047, 1199
BceAI ACGGC 1 cut(s) 685
BciT130I CCWGG 4 cut(s) 62, 178, 219, 711
BclI TGATCA 1 cut(s) 967
BcnI CCSGG 1 cut(s) 1185
BcoDI GTCTC 5 cut(s) 199, 329, 906, 1131, 1205
BcuI ACTAGT 1 cut(s) 182
BfaI CTAG 4 cut(s) 17, 119, 183, 507
BfmI CTRYAG 1 cut(s) 561
BfuAI ACCTGC 2 cut(s) 648, 1305
BglI GCCNNNNNGGC 1 cut(s) 706
BisI GCNGC 3 cut(s) 1240, 1247, 1250
BlpI GCTNAGC 2 cut(s) 53, 1316
BlsI GCNGC 3 cut(s) 1241, 1248, 1251
BmcAI AGTACT 2 cut(s) 485, 949
Bme1390I CCNGG 5 cut(s) 62, 178, 219, 711, 1185
BmeT110I CYCGRG 2 cut(s) 494, 621
BmgT120I GGNCC 2 cut(s) 694, 1267
BmiI GGNNCC 6 cut(s) 80, 216, 393, 534, 695, 1228
BmrFI CCNGG 5 cut(s) 62, 178, 219, 711, 1185
BmrI ACTGGG 1 cut(s) 1059
BmsI GCATC 4 cut(s) 139, 355, 585, 635
BmuI ACTGGG 1 cut(s) 1059
BoxI GACNNNNGTC 1 cut(s) 496
BpmI CTGGAG 1 cut(s) 129
Bpu1102I GCTNAGC 2 cut(s) 53, 1316
BpuEI CTTGAG 1 cut(s) 820
BpuMI CCSGG 1 cut(s) 1185
Bsa29I ATCGAT 1 cut(s) 303
BsaBI GATNNNNATC 1 cut(s) 857
BsaJI CCNNGG 2 cut(s) 218, 710
BsaWI WCCGGW 3 cut(s) 394, 427, 529
Bsc4I CCNNNNNNNGG 3 cut(s) 1013, 1115, 1184
Bse1I ACTGG 2 cut(s) 1015, 1054
Bse3DI GCAATG 1 cut(s) 999
Bse8I GATNNNNATC 1 cut(s) 857
BseAI TCCGGA 1 cut(s) 427
BseBI CCWGG 4 cut(s) 62, 178, 219, 711
BseCI ATCGAT 1 cut(s) 303
BseDI CCNNGG 2 cut(s) 218, 710
BseGI GGATG 4 cut(s) 600, 650, 1180, 1210
BseJI GATNNNNATC 1 cut(s) 857
BseLI CCNNNNNNNGG 3 cut(s) 1013, 1115, 1184
BseMI GCAATG 1 cut(s) 999
BseMII CTCAG 3 cut(s) 44, 392, 642
BseNI ACTGG 2 cut(s) 1015, 1054
BseRI GAGGAG 1 cut(s) 599
BseXI GCAGC 2 cut(s) 1236, 1251
BseYI CCCAGC 1 cut(s) 124
BsgI GTGCAG 1 cut(s) 1235
Bsh1236I CGCG 1 cut(s) 1246
BshFI GGCC 3 cut(s) 696, 709, 1269
BshNI GGYRCC 1 cut(s) 78
BshVI ATCGAT 1 cut(s) 303
BsiHKAI GWGCWC 1 cut(s) 1296
BsiHKCI CYCGRG 2 cut(s) 494, 621
BsiSI CCGG 4 cut(s) 395, 428, 530, 1184
BslI CCNNNNNNNGG 3 cut(s) 1013, 1115, 1184
BsmAI GTCTC 5 cut(s) 199, 329, 906, 1131, 1205
BsmBI CGTCTC 1 cut(s) 1131
BsmI GAATGC 1 cut(s) 659
BsnI GGCC 3 cut(s) 696, 709, 1269
BsoBI CYCGRG 2 cut(s) 494, 621
Bsp1286I GDGCHC 3 cut(s) 629, 1190, 1296
Bsp13I TCCGGA 1 cut(s) 427
Bsp143I GATC 9 cut(s) 159, 300, 424, 532, 664, 883, 921, 967, 1226
Bsp1720I GCTNAGC 2 cut(s) 53, 1316
BspACI CCGC 1 cut(s) 1246
BspANI GGCC 3 cut(s) 696, 709, 1269
BspCNI CTCAG 3 cut(s) 45, 393, 641
BspDI ATCGAT 1 cut(s) 303
BspEI TCCGGA 1 cut(s) 427
BspFNI CGCG 1 cut(s) 1246
BspHI TCATGA 1 cut(s) 331
BspLI GGNNCC 6 cut(s) 80, 216, 393, 534, 695, 1228
BspMAI CTGCAG 1 cut(s) 565
BspMI ACCTGC 2 cut(s) 648, 1305
BspPI GGATC 7 cut(s) 167, 419, 527, 540, 891, 1221, 1234
BspT107I GGYRCC 1 cut(s) 78
BsrDI GCAATG 1 cut(s) 999
BsrI ACTGG 2 cut(s) 1015, 1054
BssECI CCNNGG 2 cut(s) 218, 710
BssMI GATC 9 cut(s) 159, 300, 424, 532, 664, 883, 921, 967, 1226
Bst2UI CCWGG 4 cut(s) 62, 178, 219, 711
Bst4CI ACNGT 4 cut(s) 811, 900, 952, 1328
Bst6I CTCTTC 3 cut(s) 333, 909, 1277
BstAPI GCANNNNNTGC 1 cut(s) 654
BstC8I GCNNGC 3 cut(s) 609, 698, 1244
BstDEI CTNAG 5 cut(s) 53, 201, 401, 628, 1316
BstF5I GGATG 4 cut(s) 600, 650, 1180, 1210
BstFNI CGCG 1 cut(s) 1246
BstKTI GATC 9 cut(s) 162, 303, 427, 535, 667, 886, 924, 970, 1229
BstMAI GTCTC 5 cut(s) 199, 329, 906, 1131, 1205
BstMBI GATC 9 cut(s) 159, 300, 424, 532, 664, 883, 921, 967, 1226
BstMWI GCNNNNNNNGC 3 cut(s) 604, 654, 706
BstNI CCWGG 4 cut(s) 62, 178, 219, 711
BstNSI RCATGY 2 cut(s) 527, 611
BstPAI GACNNNNGTC 1 cut(s) 496
BstSCI CCNGG 5 cut(s) 60, 176, 217, 709, 1183
BstSFI CTRYAG 1 cut(s) 561
BstUI CGCG 1 cut(s) 1246
BstV1I GCAGC 2 cut(s) 1236, 1251
BstX2I RGATCY 3 cut(s) 424, 532, 1226
BstYI RGATCY 3 cut(s) 424, 532, 1226
Bsu15I ATCGAT 1 cut(s) 303
BsuRI GGCC 3 cut(s) 696, 709, 1269
BsuTUI ATCGAT 1 cut(s) 303
BtsCI GGATG 4 cut(s) 600, 650, 1180, 1210
BtsI GCAGTG 1 cut(s) 730
BtsIMutI CAGTG 5 cut(s) 648, 730, 816, 870, 1047
BveI ACCTGC 2 cut(s) 648, 1305
Cac8I GCNNGC 3 cut(s) 609, 698, 1244
CciI TCATGA 1 cut(s) 331
Cfr13I GGNCC 2 cut(s) 694, 1267
ClaI ATCGAT 1 cut(s) 303
Csp6I GTAC 7 cut(s) 29, 101, 484, 527, 715, 747, 948
CspCI CAANNNNNGTGG 2 cut(s) 369, 404
CviAII CATG 5 cut(s) 332, 524, 608, 911, 1264
CviQI GTAC 7 cut(s) 29, 101, 484, 527, 715, 747, 948
DdeI CTNAG 5 cut(s) 53, 201, 401, 628, 1316
DpnI GATC 9 cut(s) 161, 302, 426, 534, 666, 885, 923, 969, 1228
DpnII GATC 9 cut(s) 159, 300, 424, 532, 664, 883, 921, 967, 1226
Eam1104I CTCTTC 3 cut(s) 333, 909, 1277
EarI CTCTTC 3 cut(s) 333, 909, 1277
Eco24I GRGCYC 2 cut(s) 629, 1190
Eco32I GATATC 1 cut(s) 22
Eco57I CTGAAG 1 cut(s) 315
Eco88I CYCGRG 2 cut(s) 494, 621
EcoRII CCWGG 4 cut(s) 60, 176, 217, 709
EcoRV GATATC 1 cut(s) 22
EcoT38I GRGCYC 2 cut(s) 629, 1190
Esp3I CGTCTC 1 cut(s) 1131
FaeI CATG 5 cut(s) 335, 527, 611, 914, 1267
FalI AAGNNNNNCTT 2 cut(s) 1295, 1327
FatI CATG 5 cut(s) 331, 523, 607, 910, 1263
FbaI TGATCA 1 cut(s) 967
Fnu4HI GCNGC 3 cut(s) 1240, 1247, 1250
FokI GGATG 4 cut(s) 607, 657, 1167, 1217
FriOI GRGCYC 2 cut(s) 629, 1190
Fsp4HI GCNGC 3 cut(s) 1240, 1247, 1250
FspBI CTAG 4 cut(s) 17, 119, 183, 507
GluI GCNGC 3 cut(s) 1240, 1247, 1250
GsaI CCCAGC 1 cut(s) 128
GsuI CTGGAG 1 cut(s) 129
HaeIII GGCC 3 cut(s) 696, 709, 1269
HapII CCGG 4 cut(s) 395, 428, 530, 1184
Hin1II CATG 5 cut(s) 335, 527, 611, 914, 1267
HincII GTYRAC 1 cut(s) 1167
HindII GTYRAC 1 cut(s) 1167
HinfI GANTC 7 cut(s) 13, 316, 492, 568, 833, 1213, 1260
HpaII CCGG 4 cut(s) 395, 428, 530, 1184
Hpy166II GTNNAC 3 cut(s) 717, 1167, 1331
Hpy188I TCNGA 5 cut(s) 159, 502, 631, 832, 1259
Hpy188III TCNNGA 8 cut(s) 17, 146, 172, 332, 428, 784, 850, 891
Hpy8I GTNNAC 3 cut(s) 717, 1167, 1331
HpyAV CCTTC 1 cut(s) 305
HpyCH4III ACNGT 4 cut(s) 811, 900, 952, 1328
HpyF10VI GCNNNNNNNGC 3 cut(s) 604, 654, 706
HpyF3I CTNAG 5 cut(s) 53, 201, 401, 628, 1316
Hsp92II CATG 5 cut(s) 335, 527, 611, 914, 1267
Kpn2I TCCGGA 1 cut(s) 427
Ksp22I TGATCA 1 cut(s) 967
Kzo9I GATC 9 cut(s) 159, 300, 424, 532, 664, 883, 921, 967, 1226
LmnI GCTCC 1 cut(s) 397
Lsp1109I GCAGC 2 cut(s) 1236, 1251
LweI GCATC 4 cut(s) 139, 355, 585, 635
MaeI CTAG 4 cut(s) 17, 119, 183, 507
MaeIII GTNAC 3 cut(s) 676, 868, 1148
MalI GATC 9 cut(s) 161, 302, 426, 534, 666, 885, 923, 969, 1228
MboI GATC 9 cut(s) 159, 300, 424, 532, 664, 883, 921, 967, 1226
MboII GAAGA 4 cut(s) 320, 320, 896, 1264
MflI RGATCY 3 cut(s) 424, 532, 1226
MhlI GDGCHC 3 cut(s) 629, 1190, 1296
MluCI AATT 2 cut(s) 6, 1231
MlyI GAGTC 4 cut(s) 7, 486, 1207, 1269
MmeI TCCRAC 1 cut(s) 192
MroI TCCGGA 1 cut(s) 427
MroXI GAANNNNTTC 1 cut(s) 284
MseI TTAA 3 cut(s) 131, 420, 435
MspI CCGG 4 cut(s) 395, 428, 530, 1184
MspR9I CCNGG 5 cut(s) 62, 178, 219, 711, 1185
Mva1269I GAATGC 1 cut(s) 659
MvaI CCWGG 4 cut(s) 62, 178, 219, 711
MvnI CGCG 1 cut(s) 1246
MwoI GCNNNNNNNGC 3 cut(s) 604, 654, 706
NciI CCSGG 1 cut(s) 1185
NdeII GATC 9 cut(s) 159, 300, 424, 532, 664, 883, 921, 967, 1226
NlaIII CATG 5 cut(s) 335, 527, 611, 914, 1267
NlaIV GGNNCC 6 cut(s) 80, 216, 393, 534, 695, 1228
NmuCI GTSAC 1 cut(s) 868
NspI RCATGY 2 cut(s) 527, 611
PaeI GCATGC 1 cut(s) 611
PagI TCATGA 1 cut(s) 331
PaqCI CACCTGC 2 cut(s) 648, 1305
PciI ACATGT 1 cut(s) 523
PctI GAATGC 1 cut(s) 659
PdmI GAANNNNTTC 1 cut(s) 284
PfeI GAWTC 3 cut(s) 316, 568, 833
PflMI CCANNNNNTGG 2 cut(s) 1013, 1115
PkrI GCNGC 3 cut(s) 1241, 1248, 1251
PleI GAGTC 4 cut(s) 7, 486, 1207, 1268
PpsI GAGTC 4 cut(s) 7, 486, 1207, 1268
PscI ACATGT 1 cut(s) 523
PshAI GACNNNNGTC 1 cut(s) 496
Psp6I CCWGG 4 cut(s) 60, 176, 217, 709
PspFI CCCAGC 1 cut(s) 124
PspGI CCWGG 4 cut(s) 60, 176, 217, 709
PspN4I GGNNCC 6 cut(s) 80, 216, 393, 534, 695, 1228
PspPI GGNCC 2 cut(s) 694, 1267
PstI CTGCAG 1 cut(s) 565
PsuI RGATCY 3 cut(s) 424, 532, 1226
RsaI GTAC 7 cut(s) 30, 102, 485, 528, 716, 748, 949
RsaNI GTAC 7 cut(s) 29, 101, 484, 527, 715, 747, 948
SaqAI TTAA 3 cut(s) 131, 420, 435
SatI GCNGC 3 cut(s) 1240, 1247, 1250
Sau3AI GATC 9 cut(s) 159, 300, 424, 532, 664, 883, 921, 967, 1226
Sau96I GGNCC 2 cut(s) 694, 1267
ScaI AGTACT 2 cut(s) 485, 949
SchI GAGTC 4 cut(s) 7, 486, 1207, 1269
ScrFI CCNGG 5 cut(s) 62, 178, 219, 711, 1185
SduI GDGCHC 3 cut(s) 629, 1190, 1296
SfaNI GCATC 4 cut(s) 139, 355, 585, 635
SfcI CTRYAG 1 cut(s) 561
SmlI CTYRAG 1 cut(s) 799
SmoI CTYRAG 1 cut(s) 799
SpeI ACTAGT 1 cut(s) 182
SphI GCATGC 1 cut(s) 611
Sse9I AATT 2 cut(s) 6, 1231
SsiI CCGC 1 cut(s) 1246
SspMI CTAG 4 cut(s) 17, 119, 183, 507
StyD4I CCNGG 5 cut(s) 60, 176, 217, 709, 1183
TaaI ACNGT 4 cut(s) 811, 900, 952, 1328
TaqI TCGA 3 cut(s) 303, 411, 924
TasI AATT 2 cut(s) 6, 1231
TatI WGTACW 2 cut(s) 483, 947
TauI GCSGC 1 cut(s) 1249
TfiI GAWTC 3 cut(s) 316, 568, 833
Tru1I TTAA 3 cut(s) 131, 420, 435
Tru9I TTAA 3 cut(s) 131, 420, 435
TscAI CASTG 5 cut(s) 655, 737, 816, 877, 1054
TseFI GTSAC 1 cut(s) 868
TseI GCWGC 2 cut(s) 1239, 1249
Tsp45I GTSAC 1 cut(s) 868
TspDTI ATGAA 6 cut(s) 17, 293, 320, 321, 702, 1089
TspGWI ACGGA 2 cut(s) 896, 1098
TspRI CASTG 5 cut(s) 655, 737, 816, 877, 1054
Van91I CCANNNNNTGG 2 cut(s) 1013, 1115
XapI RAATTY 1 cut(s) 6
XbaI TCTAGA 1 cut(s) 16
XceI RCATGY 2 cut(s) 527, 611
XcmI CCANNNNNNNNNTGG 1 cut(s) 1046
XmnI GAANNNNTTC 1 cut(s) 284
XspI CTAG 4 cut(s) 17, 119, 183, 507
ZrmI AGTACT 2 cut(s) 485, 949
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.