Rh4DG154500

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0001567
Physical Location & Seq
Forward (+)
30860359 .. 30865882
5524 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG154500.1

Sequence Viewer

Length: 999 bp
ATGTTTATTGACTTTGGCCTGGCAAAAGAGAGAGGTGGTGGCTGCTATCTGAGCAGTCCAATATTGGTGAAGATGATGACCTCCCTCAATTCAATAGCAATTGATAATAAAGATCCGGAGTTTAAGATTGTGAGAAATAGTGGATTGTGCCAGGATAATGTTCTTGGTCAGTACTATGGACTCGGGTCAGAAACACGAAAGACAGATACACATGTACCGGATCCTTTTGGAATAGAGATTGGCAACCATGCAGAGATTCCTGCTGGATATGACGAGAGATGGATGCTCAATGTTCATGCTATTGATACTCGGGGTGCAGAGGATAGGATGGGATGCACTGAATGTAGGTGTGATCTGTATAATGTAACAAAAGATGGACAAGGCCAGCCGTTGAGCCCAGGGTACACTGGGGGTTTGCAGTGCTGTTATGATGGTACACAGTGCAGCGTAAAACAAGGCTATAATGGTGTCAAGAGAAGCCTCTACTTGAGATACACTGTGAAGTGGGTTGATTGGTCCGATTCCATTGTTCCTGTCAAGATTTATATCTTTGATGTCACTGATAGAACAAATCATTCATCAGGACCCTCTCTTAAACATGATTGCCGGATCGAATATAATGTTGAGCCTTGCAGTACTGTCAATACGGTAAATGATCAGTGCTTTGACAATCAACGGGCAATGGTTACTATGCCAACTGGTGGTTATATCGTCTATGGTGTTGCCCATCAGCACACTGGGGGACGTGGCTCAACTCTGTATGGAGAGGACGGACGGGTTCTCTGTTCATCAATACCAATGTATGGGCACAGCGAGGAAGTAGGAGACGAGGCTGGTTACGTTGTGGGAATGTCAACTTGCTATCCACATCCTGGCTCTGTCAAAATAAAGGATGGGGAGACTCTGGTTCTGGCATCTAATTACAGCAGCTCGCAGCCGCACACAGGAGTCATGGGCCTCTTCTACATTTTGGTTGCAGAGTATCAGAAAAATATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SURNod19

Protein Analysis

332

Amino Acids

36.57

Weight (kDa)

5.45

Isoelectric Point (pI)

36.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SURNod19 PF07712 34 - 327 2.3e-149 Stress up-regulated Nod 19
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 3 cut(s) 701, 803, 872
AccIII TCCGGA 1 cut(s) 115
AciI CCGC 1 cut(s) 938
AclWI GGATC 4 cut(s) 107, 215, 228, 617
AfaI GTAC 5 cut(s) 173, 216, 404, 436, 637
AfiI CCNNNNNNNGG 4 cut(s) 701, 803, 872, 944
AflIII ACRYGT 1 cut(s) 211
AgsI TTSAA 1 cut(s) 93
AjiI CACGTC 1 cut(s) 746
AjnI CCWGG 4 cut(s) 18, 150, 397, 871
AluBI AGCT 1 cut(s) 930
AluI AGCT 1 cut(s) 930
Alw26I GTCTC 2 cut(s) 819, 893
AlwI GGATC 4 cut(s) 107, 215, 228, 617
Ama87I CYCGRG 2 cut(s) 182, 309
Aor13HI TCCGGA 1 cut(s) 115
AoxI GGCC 3 cut(s) 16, 382, 955
ApeKI GCWGC 4 cut(s) 42, 444, 927, 934
AspS9I GGNCC 3 cut(s) 516, 584, 955
AsuHPI GGTGA 1 cut(s) 79
AvaI CYCGRG 2 cut(s) 182, 309
AvaII GGWCC 2 cut(s) 516, 584
BaeGI GKGCMC 1 cut(s) 810
BaeI ACNNNNGTAYC 4 cut(s) 198, 198, 231, 231
BamHI GGATCC 1 cut(s) 220
BanII GRGCYC 1 cut(s) 398
BbvI GCAGC 4 cut(s) 29, 456, 939, 946
BccI CCATC 6 cut(s) 273, 322, 368, 425, 735, 887
BceAI ACGGC 1 cut(s) 373
BciT130I CCWGG 4 cut(s) 20, 152, 399, 873
BclI TGATCA 1 cut(s) 655
BcoDI GTCTC 2 cut(s) 819, 893
BisI GCNGC 5 cut(s) 43, 445, 928, 935, 938
BlsI GCNGC 5 cut(s) 44, 446, 929, 936, 939
BmcAI AGTACT 2 cut(s) 173, 637
Bme1390I CCNGG 4 cut(s) 20, 152, 399, 873
Bme18I GGWCC 2 cut(s) 516, 584
BmeT110I CYCGRG 2 cut(s) 182, 309
BmgBI CACGTC 1 cut(s) 746
BmgT120I GGNCC 3 cut(s) 516, 584, 955
BmiI GGNNCC 2 cut(s) 222, 586
BmrFI CCNGG 4 cut(s) 20, 152, 399, 873
BmrI ACTGGG 2 cut(s) 417, 747
BmsI GCATC 3 cut(s) 273, 323, 923
BmuI ACTGGG 2 cut(s) 417, 747
BoxI GACNNNNGTC 1 cut(s) 184
BpuEI CTTGAG 1 cut(s) 508
BsaBI GATNNNNATC 1 cut(s) 545
BsaJI CCNNGG 2 cut(s) 397, 398
BsaWI WCCGGW 2 cut(s) 115, 217
Bsc4I CCNNNNNNNGG 4 cut(s) 701, 803, 872, 944
Bse1I ACTGG 3 cut(s) 412, 703, 742
Bse3DI GCAATG 1 cut(s) 687
Bse8I GATNNNNATC 1 cut(s) 545
BseAI TCCGGA 1 cut(s) 115
BseBI CCWGG 4 cut(s) 20, 152, 399, 873
BseDI CCNNGG 2 cut(s) 397, 398
BseGI GGATG 5 cut(s) 288, 333, 338, 868, 898
BseJI GATNNNNATC 1 cut(s) 545
BseLI CCNNNNNNNGG 4 cut(s) 701, 803, 872, 944
BseMI GCAATG 1 cut(s) 687
BseMII CTCAG 1 cut(s) 41
BseNI ACTGG 3 cut(s) 412, 703, 742
BseSI GKGCMC 1 cut(s) 810
BseXI GCAGC 4 cut(s) 29, 456, 939, 946
BsgI GTGCAG 2 cut(s) 336, 463
BshFI GGCC 3 cut(s) 18, 384, 957
BsiHKCI CYCGRG 2 cut(s) 182, 309
BsiSI CCGG 3 cut(s) 116, 218, 607
BslFI GGGAC 1 cut(s) 756
BslI CCNNNNNNNGG 4 cut(s) 701, 803, 872, 944
BsmAI GTCTC 2 cut(s) 819, 893
BsmBI CGTCTC 1 cut(s) 819
BsmFI GGGAC 1 cut(s) 756
BsnI GGCC 3 cut(s) 18, 384, 957
BsoBI CYCGRG 2 cut(s) 182, 309
Bsp1286I GDGCHC 2 cut(s) 398, 810
Bsp13I TCCGGA 1 cut(s) 115
Bsp143I GATC 5 cut(s) 112, 220, 352, 609, 655
BspACI CCGC 1 cut(s) 938
BspANI GGCC 3 cut(s) 18, 384, 957
BspCNI CTCAG 1 cut(s) 42
BspEI TCCGGA 1 cut(s) 115
BspLI GGNNCC 2 cut(s) 222, 586
BspPI GGATC 4 cut(s) 107, 215, 228, 617
BsrDI GCAATG 1 cut(s) 687
BsrI ACTGG 3 cut(s) 412, 703, 742
BssECI CCNNGG 2 cut(s) 397, 398
BssMI GATC 5 cut(s) 112, 220, 352, 609, 655
Bst2UI CCWGG 4 cut(s) 20, 152, 399, 873
Bst4CI ACNGT 4 cut(s) 441, 499, 640, 649
Bst6I CTCTTC 1 cut(s) 965
BstC8I GCNNGC 2 cut(s) 386, 932
BstDEI CTNAG 1 cut(s) 50
BstF5I GGATG 5 cut(s) 288, 333, 338, 868, 898
BstKTI GATC 5 cut(s) 115, 223, 355, 612, 658
BstMAI GTCTC 2 cut(s) 819, 893
BstMBI GATC 5 cut(s) 112, 220, 352, 609, 655
BstMWI GCNNNNNNNGC 1 cut(s) 51
BstNI CCWGG 4 cut(s) 20, 152, 399, 873
BstNSI RCATGY 1 cut(s) 215
BstPAI GACNNNNGTC 1 cut(s) 184
BstSCI CCNGG 4 cut(s) 18, 150, 397, 871
BstSLI GKGCMC 1 cut(s) 810
BstV1I GCAGC 4 cut(s) 29, 456, 939, 946
BstX2I RGATCY 2 cut(s) 112, 220
BstYI RGATCY 2 cut(s) 112, 220
BsuRI GGCC 3 cut(s) 18, 384, 957
BtrI CACGTC 1 cut(s) 746
BtsCI GGATG 5 cut(s) 288, 333, 338, 868, 898
BtsI GCAGTG 1 cut(s) 425
BtsIMutI CAGTG 8 cut(s) 336, 405, 425, 446, 495, 558, 665, 735
Cac8I GCNNGC 2 cut(s) 386, 932
Cfr13I GGNCC 3 cut(s) 516, 584, 955
Csp6I GTAC 5 cut(s) 172, 215, 403, 435, 636
CviAII CATG 5 cut(s) 212, 248, 296, 599, 952
CviQI GTAC 5 cut(s) 172, 215, 403, 435, 636
DdeI CTNAG 1 cut(s) 50
DpnI GATC 5 cut(s) 114, 222, 354, 611, 657
DpnII GATC 5 cut(s) 112, 220, 352, 609, 655
Eam1104I CTCTTC 1 cut(s) 965
EarI CTCTTC 1 cut(s) 965
Eco24I GRGCYC 1 cut(s) 398
Eco47I GGWCC 2 cut(s) 516, 584
Eco88I CYCGRG 2 cut(s) 182, 309
EcoO109I RGGNCCY 1 cut(s) 584
EcoRII CCWGG 4 cut(s) 18, 150, 397, 871
EcoT38I GRGCYC 1 cut(s) 398
Esp3I CGTCTC 1 cut(s) 819
FaeI CATG 5 cut(s) 215, 251, 299, 602, 955
FaqI GGGAC 1 cut(s) 756
FatI CATG 5 cut(s) 211, 247, 295, 598, 951
FbaI TGATCA 1 cut(s) 655
Fnu4HI GCNGC 5 cut(s) 43, 445, 928, 935, 938
FokI GGATG 5 cut(s) 295, 340, 345, 855, 905
FriOI GRGCYC 1 cut(s) 398
Fsp4HI GCNGC 5 cut(s) 43, 445, 928, 935, 938
GluI GCNGC 5 cut(s) 43, 445, 928, 935, 938
HaeIII GGCC 3 cut(s) 18, 384, 957
HapII CCGG 3 cut(s) 116, 218, 607
Hin1II CATG 5 cut(s) 215, 251, 299, 602, 955
HincII GTYRAC 1 cut(s) 855
HindII GTYRAC 1 cut(s) 855
HinfI GANTC 5 cut(s) 180, 256, 521, 901, 948
HpaII CCGG 3 cut(s) 116, 218, 607
HphI GGTGA 1 cut(s) 79
Hpy166II GTNNAC 3 cut(s) 405, 437, 855
Hpy188I TCNGA 4 cut(s) 51, 190, 520, 987
Hpy188III TCNNGA 4 cut(s) 116, 472, 538, 582
Hpy8I GTNNAC 3 cut(s) 405, 437, 855
HpyCH4III ACNGT 4 cut(s) 441, 499, 640, 649
HpyCH4IV ACGT 2 cut(s) 745, 840
HpyCH4V TGCA 7 cut(s) 251, 317, 336, 418, 444, 633, 977
HpyF10VI GCNNNNNNNGC 1 cut(s) 51
HpyF3I CTNAG 1 cut(s) 50
HpySE526I ACGT 2 cut(s) 745, 840
Hsp92II CATG 5 cut(s) 215, 251, 299, 602, 955
Kpn2I TCCGGA 1 cut(s) 115
Ksp22I TGATCA 1 cut(s) 655
Kzo9I GATC 5 cut(s) 112, 220, 352, 609, 655
Lsp1109I GCAGC 4 cut(s) 29, 456, 939, 946
LweI GCATC 3 cut(s) 273, 323, 923
MaeII ACGT 2 cut(s) 745, 840
MaeIII GTNAC 4 cut(s) 364, 556, 685, 836
MalI GATC 5 cut(s) 114, 222, 354, 611, 657
MboI GATC 5 cut(s) 112, 220, 352, 609, 655
MboII GAAGA 2 cut(s) 82, 952
MfeI CAATTG 1 cut(s) 99
MflI RGATCY 2 cut(s) 112, 220
MhlI GDGCHC 2 cut(s) 398, 810
MluCI AATT 3 cut(s) 88, 99, 919
MlyI GAGTC 3 cut(s) 174, 895, 957
MroI TCCGGA 1 cut(s) 115
MseI TTAA 2 cut(s) 123, 594
MspI CCGG 3 cut(s) 116, 218, 607
MspR9I CCNGG 4 cut(s) 20, 152, 399, 873
MunI CAATTG 1 cut(s) 99
MvaI CCWGG 4 cut(s) 20, 152, 399, 873
MwoI GCNNNNNNNGC 1 cut(s) 51
NdeII GATC 5 cut(s) 112, 220, 352, 609, 655
NlaIII CATG 5 cut(s) 215, 251, 299, 602, 955
NlaIV GGNNCC 2 cut(s) 222, 586
NmuCI GTSAC 1 cut(s) 556
NspI RCATGY 1 cut(s) 215
PasI CCCWGGG 1 cut(s) 398
PciI ACATGT 1 cut(s) 211
PfeI GAWTC 2 cut(s) 256, 521
PflMI CCANNNNNTGG 3 cut(s) 701, 803, 872
PkrI GCNGC 5 cut(s) 44, 446, 929, 936, 939
PleI GAGTC 3 cut(s) 174, 895, 956
PpsI GAGTC 3 cut(s) 174, 895, 956
PpuMI RGGWCCY 1 cut(s) 584
PscI ACATGT 1 cut(s) 211
PshAI GACNNNNGTC 1 cut(s) 184
Psp5II RGGWCCY 1 cut(s) 584
Psp6I CCWGG 4 cut(s) 18, 150, 397, 871
PspGI CCWGG 4 cut(s) 18, 150, 397, 871
PspN4I GGNNCC 2 cut(s) 222, 586
PspPI GGNCC 3 cut(s) 516, 584, 955
PspPPI RGGWCCY 1 cut(s) 584
PsuI RGATCY 2 cut(s) 112, 220
RsaI GTAC 5 cut(s) 173, 216, 404, 436, 637
RsaNI GTAC 5 cut(s) 172, 215, 403, 435, 636
SaqAI TTAA 2 cut(s) 123, 594
SatI GCNGC 5 cut(s) 43, 445, 928, 935, 938
Sau3AI GATC 5 cut(s) 112, 220, 352, 609, 655
Sau96I GGNCC 3 cut(s) 516, 584, 955
ScaI AGTACT 2 cut(s) 173, 637
SchI GAGTC 3 cut(s) 174, 895, 957
ScrFI CCNGG 4 cut(s) 20, 152, 399, 873
SduI GDGCHC 2 cut(s) 398, 810
SetI ASST 6 cut(s) 37, 83, 350, 748, 843, 932
SfaNI GCATC 3 cut(s) 273, 323, 923
SinI GGWCC 2 cut(s) 516, 584
SmlI CTYRAG 1 cut(s) 487
SmoI CTYRAG 1 cut(s) 487
Sse9I AATT 3 cut(s) 88, 99, 919
SsiI CCGC 1 cut(s) 938
SspI AATATT 2 cut(s) 63, 994
StyD4I CCNGG 4 cut(s) 18, 150, 397, 871
TaaI ACNGT 4 cut(s) 441, 499, 640, 649
TaiI ACGT 2 cut(s) 748, 843
TaqI TCGA 1 cut(s) 612
TasI AATT 3 cut(s) 88, 99, 919
TatI WGTACW 2 cut(s) 171, 635
TauI GCSGC 1 cut(s) 940
TfiI GAWTC 2 cut(s) 256, 521
Tru1I TTAA 2 cut(s) 123, 594
Tru9I TTAA 2 cut(s) 123, 594
TscAI CASTG 8 cut(s) 343, 412, 425, 446, 502, 565, 665, 742
TseFI GTSAC 1 cut(s) 556
TseI GCWGC 4 cut(s) 42, 444, 927, 934
Tsp45I GTSAC 1 cut(s) 556
TspDTI ATGAA 3 cut(s) 284, 567, 777
TspGWI ACGGA 1 cut(s) 786
TspRI CASTG 8 cut(s) 343, 412, 425, 446, 502, 565, 665, 742
Van91I CCANNNNNTGG 3 cut(s) 701, 803, 872
VpaK11BI GGWCC 2 cut(s) 516, 584
XceI RCATGY 1 cut(s) 215
XcmI CCANNNNNNNNNTGG 1 cut(s) 734
ZrmI AGTACT 2 cut(s) 173, 637
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.