Rh7DG097000

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0001567
Physical Location & Seq
Reverse (-)
8128544 .. 8131423
2880 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG097000.1

Sequence Viewer

Length: 1098 bp
ATGAAAATTTTGACTCTAGCTATCATCGTACCCACTCCTCTCTTGCTCTGGCTGAGGCACCTGGAAAGAAAATGGCACCTCCTTGTCATAAGTTTGGTACTTTTGTTAGCTGTGCTAGTGCTGGGGTTAAGCCTACCATCTCCAGATGCCATTCGGATCAATAAGGTCAAGACCAGGACTAGTGTTTATGTCTCCCCTAAGTTTGTGTTGGAACCAGGGTCAGTTGCAGACAAGTATTTCTATAACATTCACTTCCCAAGAGGTCATATTGCTATGAAGTATTTCAATGCTGAAGTGATCGATGAAGAAGGGAATCCTATTCCTCTTCATGAGACTTATCTGCATCATTGGGTTATTGAAAGATATTATGCCCAGGCAAGTTATGTGGAACCGGAGCTGAGTGGTTTCGAGGATATTAAAGATCCGGATTTTAAGATTGTGAGAAATAGTGGATTGTGCCAGAATAATGTTCTTGGTCAGTACTATGGACTCGGGTCAGAAACTAGAAAGACAGATACACATGTACCGGATCCTTTTGGAATAGAGATTGGCAACCCTGCAGAGATTCCTGCTGGATATGAGGAGAGATGGATGCTCAATGTTCATGCTATTGATACTCGGGGCGCAGAGGATAGGTTGGGATGCACTGAATGCAGGTGTGATCTGTATAATGTAACAAAAGATGGATGGGGCCAGCCGTTGAGGCCAGGGTACACAGGGGGTTTGCACTGCTGTTATGATGGTACGAAGTGCAGCGTAAAACAAGGCTACAATGGTGTCAAGAGAAGCCTCTACTTGAGATACACTGTGAAGTGGGTTGATTGGTCTGATTCTATTGTGCCTGTCAAGATTTATATCTTTGATGTCACTGATAGAACGGATCATTCAGGAGGACCGTCTCTTCAACATGATTGCCGGAACGAATATAATGTTGAGCCTTGCAGTGTTGTTGATTTGGTAAATGATCAATGCTTTGACAATCAAAGGGCAATGATTACTATGCCAACTGGTGGTTATATCGTCTATGGTGTAGCCCATCAGCACACTGGGGGGCGCGGCTCAACTCTATATGGAGAGGTGCTTTTCTTGTACTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SURNod19

Protein Analysis

365

Amino Acids

41.37

Weight (kDa)

6.05

Isoelectric Point (pI)

36.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SURNod19 PF07712 57 - 359 2.3e-142 Stress up-regulated Nod 19
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 645
Acc36I ACCTGC 1 cut(s) 645
AccB1I GGYRCC 2 cut(s) 57, 75
AccB7I CCANNNNNTGG 1 cut(s) 1010
AccII CGCG 1 cut(s) 1056
AccIII TCCGGA 1 cut(s) 424
AciI CCGC 1 cut(s) 1056
AclWI GGATC 5 cut(s) 164, 416, 524, 537, 888
AcsI RAATTY 1 cut(s) 6
AcuI CTGAAG 1 cut(s) 312
AfaI GTAC 7 cut(s) 30, 99, 482, 525, 713, 745, 1091
AfiI CCNNNNNNNGG 1 cut(s) 1010
AflIII ACRYGT 1 cut(s) 520
AgsI TTSAA 3 cut(s) 286, 359, 905
AhlI ACTAGT 1 cut(s) 179
AjnI CCWGG 5 cut(s) 60, 173, 214, 372, 706
AluBI AGCT 3 cut(s) 20, 110, 397
AluI AGCT 3 cut(s) 20, 110, 397
Alw26I GTCTC 3 cut(s) 196, 326, 903
AlwI GGATC 5 cut(s) 164, 416, 524, 537, 888
Ama87I CYCGRG 2 cut(s) 491, 618
Aor13HI TCCGGA 1 cut(s) 424
AoxI GGCC 2 cut(s) 691, 704
ApeKI GCWGC 1 cut(s) 753
ApoI RAATTY 1 cut(s) 6
Asp700I GAANNNNTTC 1 cut(s) 281
AspLEI GCGC 2 cut(s) 626, 1056
AspS9I GGNCC 2 cut(s) 691, 893
AvaI CYCGRG 2 cut(s) 491, 618
AvaII GGWCC 1 cut(s) 893
BaeI ACNNNNGTAYC 6 cut(s) 89, 122, 507, 507, 540, 540
BamHI GGATCC 1 cut(s) 529
BanI GGYRCC 2 cut(s) 57, 75
BbvCI CCTCAGC 1 cut(s) 53
BbvI GCAGC 1 cut(s) 765
BccI CCATC 6 cut(s) 145, 582, 677, 681, 734, 1044
BceAI ACGGC 1 cut(s) 682
BciT130I CCWGG 5 cut(s) 62, 175, 216, 374, 708
BclI TGATCA 1 cut(s) 964
BcoDI GTCTC 3 cut(s) 196, 326, 903
BcuI ACTAGT 1 cut(s) 179
BfaI CTAG 4 cut(s) 17, 116, 180, 504
BfmI CTRYAG 1 cut(s) 558
BfuAI ACCTGC 1 cut(s) 645
BglI GCCNNNNNGGC 1 cut(s) 703
BisI GCNGC 2 cut(s) 754, 1057
BlsI GCNGC 2 cut(s) 755, 1058
BmcAI AGTACT 1 cut(s) 482
Bme1390I CCNGG 5 cut(s) 62, 175, 216, 374, 708
Bme18I GGWCC 1 cut(s) 893
BmeT110I CYCGRG 2 cut(s) 491, 618
BmgT120I GGNCC 2 cut(s) 691, 893
BmiI GGNNCC 6 cut(s) 59, 77, 213, 390, 531, 692
BmrFI CCNGG 5 cut(s) 62, 175, 216, 374, 708
BmrI ACTGGG 1 cut(s) 1056
BmsI GCATC 4 cut(s) 136, 352, 582, 632
BmuI ACTGGG 1 cut(s) 1056
BoxI GACNNNNGTC 1 cut(s) 493
BpmI CTGGAG 1 cut(s) 126
Bpu10I CCTNAGC 1 cut(s) 53
BpuEI CTTGAG 1 cut(s) 817
Bsa29I ATCGAT 1 cut(s) 300
BsaBI GATNNNNATC 1 cut(s) 854
BsaJI CCNNGG 3 cut(s) 215, 372, 707
BsaWI WCCGGW 3 cut(s) 391, 424, 526
Bsc4I CCNNNNNNNGG 1 cut(s) 1010
Bse1I ACTGG 2 cut(s) 1012, 1051
Bse3DI GCAATG 1 cut(s) 996
Bse8I GATNNNNATC 1 cut(s) 854
BseAI TCCGGA 1 cut(s) 424
BseBI CCWGG 5 cut(s) 62, 175, 216, 374, 708
BseCI ATCGAT 1 cut(s) 300
BseDI CCNNGG 3 cut(s) 215, 372, 707
BseGI GGATG 3 cut(s) 597, 647, 692
BseJI GATNNNNATC 1 cut(s) 854
BseLI CCNNNNNNNGG 1 cut(s) 1010
BseMI GCAATG 1 cut(s) 996
BseMII CTCAG 2 cut(s) 44, 389
BseNI ACTGG 2 cut(s) 1012, 1051
BseRI GAGGAG 2 cut(s) 27, 596
BseXI GCAGC 1 cut(s) 765
BseYI CCCAGC 1 cut(s) 121
BsgI GTGCAG 1 cut(s) 772
Bsh1236I CGCG 1 cut(s) 1056
BshFI GGCC 2 cut(s) 693, 706
BshNI GGYRCC 2 cut(s) 57, 75
BshVI ATCGAT 1 cut(s) 300
BsiHKCI CYCGRG 2 cut(s) 491, 618
BsiSI CCGG 4 cut(s) 392, 425, 527, 916
BslI CCNNNNNNNGG 1 cut(s) 1010
BsmAI GTCTC 3 cut(s) 196, 326, 903
BsmBI CGTCTC 1 cut(s) 903
BsmI GAATGC 1 cut(s) 656
BsnI GGCC 2 cut(s) 693, 706
BsoBI CYCGRG 2 cut(s) 491, 618
Bsp13I TCCGGA 1 cut(s) 424
Bsp143I GATC 7 cut(s) 156, 297, 421, 529, 661, 880, 964
BspACI CCGC 1 cut(s) 1056
BspANI GGCC 2 cut(s) 693, 706
BspCNI CTCAG 2 cut(s) 45, 390
BspDI ATCGAT 1 cut(s) 300
BspEI TCCGGA 1 cut(s) 424
BspFNI CGCG 1 cut(s) 1056
BspHI TCATGA 1 cut(s) 328
BspLI GGNNCC 6 cut(s) 59, 77, 213, 390, 531, 692
BspMAI CTGCAG 1 cut(s) 562
BspMI ACCTGC 1 cut(s) 645
BspPI GGATC 5 cut(s) 164, 416, 524, 537, 888
BspT107I GGYRCC 2 cut(s) 57, 75
BsrDI GCAATG 1 cut(s) 996
BsrI ACTGG 2 cut(s) 1012, 1051
BssECI CCNNGG 3 cut(s) 215, 372, 707
BssMI GATC 7 cut(s) 156, 297, 421, 529, 661, 880, 964
Bst2UI CCWGG 5 cut(s) 62, 175, 216, 374, 708
Bst4CI ACNGT 2 cut(s) 808, 897
Bst6I CTCTTC 2 cut(s) 330, 906
BstAPI GCANNNNNTGC 1 cut(s) 651
BstC8I GCNNGC 1 cut(s) 695
BstDEI CTNAG 3 cut(s) 53, 198, 398
BstF5I GGATG 3 cut(s) 597, 647, 692
BstFNI CGCG 1 cut(s) 1056
BstHHI GCGC 2 cut(s) 626, 1056
BstKTI GATC 7 cut(s) 159, 300, 424, 532, 664, 883, 967
BstMAI GTCTC 3 cut(s) 196, 326, 903
BstMBI GATC 7 cut(s) 156, 297, 421, 529, 661, 880, 964
BstMWI GCNNNNNNNGC 2 cut(s) 651, 703
BstNI CCWGG 5 cut(s) 62, 175, 216, 374, 708
BstNSI RCATGY 1 cut(s) 524
BstPAI GACNNNNGTC 1 cut(s) 493
BstSCI CCNGG 5 cut(s) 60, 173, 214, 372, 706
BstSFI CTRYAG 1 cut(s) 558
BstUI CGCG 1 cut(s) 1056
BstV1I GCAGC 1 cut(s) 765
BstX2I RGATCY 2 cut(s) 421, 529
BstYI RGATCY 2 cut(s) 421, 529
Bsu15I ATCGAT 1 cut(s) 300
BsuRI GGCC 2 cut(s) 693, 706
BsuTUI ATCGAT 1 cut(s) 300
BtsCI GGATG 3 cut(s) 597, 647, 692
BtsI GCAGTG 2 cut(s) 727, 949
BtsIMutI CAGTG 6 cut(s) 645, 727, 804, 867, 949, 1044
BveI ACCTGC 1 cut(s) 645
Cac8I GCNNGC 1 cut(s) 695
CciI TCATGA 1 cut(s) 328
CfoI GCGC 2 cut(s) 626, 1056
Cfr13I GGNCC 2 cut(s) 691, 893
ClaI ATCGAT 1 cut(s) 300
Csp6I GTAC 7 cut(s) 29, 98, 481, 524, 712, 744, 1090
CspCI CAANNNNNGTGG 2 cut(s) 366, 401
CviAII CATG 4 cut(s) 329, 521, 605, 908
CviQI GTAC 7 cut(s) 29, 98, 481, 524, 712, 744, 1090
DdeI CTNAG 3 cut(s) 53, 198, 398
DpnI GATC 7 cut(s) 158, 299, 423, 531, 663, 882, 966
DpnII GATC 7 cut(s) 156, 297, 421, 529, 661, 880, 964
Eam1104I CTCTTC 2 cut(s) 330, 906
EarI CTCTTC 2 cut(s) 330, 906
Eco47I GGWCC 1 cut(s) 893
Eco57I CTGAAG 1 cut(s) 312
Eco88I CYCGRG 2 cut(s) 491, 618
EcoRII CCWGG 5 cut(s) 60, 173, 214, 372, 706
Esp3I CGTCTC 1 cut(s) 903
FaeI CATG 4 cut(s) 332, 524, 608, 911
FatI CATG 4 cut(s) 328, 520, 604, 907
FbaI TGATCA 1 cut(s) 964
Fnu4HI GCNGC 2 cut(s) 754, 1057
FokI GGATG 3 cut(s) 604, 654, 699
Fsp4HI GCNGC 2 cut(s) 754, 1057
FspBI CTAG 4 cut(s) 17, 116, 180, 504
GlaI GCGC 2 cut(s) 625, 1055
GluI GCNGC 2 cut(s) 754, 1057
GsaI CCCAGC 1 cut(s) 125
GsuI CTGGAG 1 cut(s) 126
HaeIII GGCC 2 cut(s) 693, 706
HapII CCGG 4 cut(s) 392, 425, 527, 916
HhaI GCGC 2 cut(s) 626, 1056
Hin1II CATG 4 cut(s) 332, 524, 608, 911
Hin6I GCGC 2 cut(s) 624, 1054
HinP1I GCGC 2 cut(s) 624, 1054
HinfI GANTC 5 cut(s) 13, 313, 489, 565, 830
HpaII CCGG 4 cut(s) 392, 425, 527, 916
Hpy166II GTNNAC 1 cut(s) 714
Hpy188I TCNGA 3 cut(s) 156, 499, 829
Hpy188III TCNNGA 7 cut(s) 143, 169, 329, 425, 781, 847, 888
Hpy8I GTNNAC 1 cut(s) 714
HpyAV CCTTC 1 cut(s) 302
HpyCH4III ACNGT 2 cut(s) 808, 897
HpyCH4V TGCA 8 cut(s) 227, 343, 560, 645, 654, 727, 753, 942
HpyF10VI GCNNNNNNNGC 2 cut(s) 651, 703
HpyF3I CTNAG 3 cut(s) 53, 198, 398
Hsp92II CATG 4 cut(s) 332, 524, 608, 911
HspAI GCGC 2 cut(s) 624, 1054
Kpn2I TCCGGA 1 cut(s) 424
Ksp22I TGATCA 1 cut(s) 964
Kzo9I GATC 7 cut(s) 156, 297, 421, 529, 661, 880, 964
LmnI GCTCC 1 cut(s) 394
Lsp1109I GCAGC 1 cut(s) 765
LweI GCATC 4 cut(s) 136, 352, 582, 632
MaeI CTAG 4 cut(s) 17, 116, 180, 504
MaeIII GTNAC 2 cut(s) 673, 865
MalI GATC 7 cut(s) 158, 299, 423, 531, 663, 882, 966
MboI GATC 7 cut(s) 156, 297, 421, 529, 661, 880, 964
MboII GAAGA 3 cut(s) 317, 317, 893
MflI RGATCY 2 cut(s) 421, 529
MluCI AATT 1 cut(s) 6
MlyI GAGTC 2 cut(s) 7, 483
MmeI TCCRAC 1 cut(s) 189
MroI TCCGGA 1 cut(s) 424
MroXI GAANNNNTTC 1 cut(s) 281
MseI TTAA 3 cut(s) 128, 417, 432
MspI CCGG 4 cut(s) 392, 425, 527, 916
MspR9I CCNGG 5 cut(s) 62, 175, 216, 374, 708
Mva1269I GAATGC 1 cut(s) 656
MvaI CCWGG 5 cut(s) 62, 175, 216, 374, 708
MvnI CGCG 1 cut(s) 1056
MwoI GCNNNNNNNGC 2 cut(s) 651, 703
NdeII GATC 7 cut(s) 156, 297, 421, 529, 661, 880, 964
NlaIII CATG 4 cut(s) 332, 524, 608, 911
NlaIV GGNNCC 6 cut(s) 59, 77, 213, 390, 531, 692
NmuCI GTSAC 1 cut(s) 865
NspI RCATGY 1 cut(s) 524
PagI TCATGA 1 cut(s) 328
PaqCI CACCTGC 1 cut(s) 645
PciI ACATGT 1 cut(s) 520
PctI GAATGC 1 cut(s) 656
PdmI GAANNNNTTC 1 cut(s) 281
PfeI GAWTC 3 cut(s) 313, 565, 830
PflMI CCANNNNNTGG 1 cut(s) 1010
PkrI GCNGC 2 cut(s) 755, 1058
PleI GAGTC 2 cut(s) 7, 483
PpsI GAGTC 2 cut(s) 7, 483
PscI ACATGT 1 cut(s) 520
PshAI GACNNNNGTC 1 cut(s) 493
Psp6I CCWGG 5 cut(s) 60, 173, 214, 372, 706
PspFI CCCAGC 1 cut(s) 121
PspGI CCWGG 5 cut(s) 60, 173, 214, 372, 706
PspN4I GGNNCC 6 cut(s) 59, 77, 213, 390, 531, 692
PspPI GGNCC 2 cut(s) 691, 893
PstI CTGCAG 1 cut(s) 562
PsuI RGATCY 2 cut(s) 421, 529
RsaI GTAC 7 cut(s) 30, 99, 482, 525, 713, 745, 1091
RsaNI GTAC 7 cut(s) 29, 98, 481, 524, 712, 744, 1090
SaqAI TTAA 3 cut(s) 128, 417, 432
SatI GCNGC 2 cut(s) 754, 1057
Sau3AI GATC 7 cut(s) 156, 297, 421, 529, 661, 880, 964
Sau96I GGNCC 2 cut(s) 691, 893
ScaI AGTACT 1 cut(s) 482
SchI GAGTC 2 cut(s) 7, 483
ScrFI CCNGG 5 cut(s) 62, 175, 216, 374, 708
SfaNI GCATC 4 cut(s) 136, 352, 582, 632
SfcI CTRYAG 1 cut(s) 558
SinI GGWCC 1 cut(s) 893
SmlI CTYRAG 1 cut(s) 796
SmoI CTYRAG 1 cut(s) 796
SpeI ACTAGT 1 cut(s) 179
Sse9I AATT 1 cut(s) 6
SsiI CCGC 1 cut(s) 1056
SspMI CTAG 4 cut(s) 17, 116, 180, 504
StyD4I CCNGG 5 cut(s) 60, 173, 214, 372, 706
TaaI ACNGT 2 cut(s) 808, 897
TaqI TCGA 2 cut(s) 300, 408
TasI AATT 1 cut(s) 6
TatI WGTACW 2 cut(s) 480, 1089
TauI GCSGC 1 cut(s) 1059
TfiI GAWTC 3 cut(s) 313, 565, 830
Tru1I TTAA 3 cut(s) 128, 417, 432
Tru9I TTAA 3 cut(s) 128, 417, 432
TscAI CASTG 6 cut(s) 652, 734, 811, 874, 949, 1051
TseFI GTSAC 1 cut(s) 865
TseI GCWGC 1 cut(s) 753
Tsp45I GTSAC 1 cut(s) 865
TspDTI ATGAA 5 cut(s) 17, 290, 317, 318, 593
TspGWI ACGGA 1 cut(s) 893
TspRI CASTG 6 cut(s) 652, 734, 811, 874, 949, 1051
Van91I CCANNNNNTGG 1 cut(s) 1010
VpaK11BI GGWCC 1 cut(s) 893
XapI RAATTY 1 cut(s) 6
XceI RCATGY 1 cut(s) 524
XcmI CCANNNNNNNNNTGG 1 cut(s) 1043
XmnI GAANNNNTTC 1 cut(s) 281
XspI CTAG 4 cut(s) 17, 116, 180, 504
ZrmI AGTACT 1 cut(s) 482
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.