Prupe.5G139900_v2.0.a1

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0001567
Physical Location & Seq
Reverse (-)
13079182 .. 13082129
2948 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G139900.1

Sequence Viewer

Length: 1386 bp
ATGAATGATTTATATCCAATAGACTCTGAAAGTCTCCAACTTTATCATCAAACGCAGACCAGACTCTTGCTGTGGCTCTCAGACACTACTTCCTCCTTCCATTTTTGCGAAAGAAAAAAAATGGAACGTTGTTTTCAAGGTTGGGTGGTTTTGTTAGCTATGCTAGTACTGGCAATAAGTATGCCATGTTCACATGCTATTCGGGTAACCAAAACTAAGACCAGGTCTGGCGTTTATGTTTCTCCTAAGTTTGTGTTGGCGCCAGGATCAGTTGCAGACAAATATTACTATGATATCCCCTTTCCAAAAGGTCATATTGGCCTCAAGAGTTTCAATGCTGAAGTAATTGATGAAGAGGGGAATCCCATCCCCCTTCAAGAAACTTATCTCCATCATTGGGTTGTTGCTAGATATTATGCCCGGACAGGTTTTGTTGAGCCAGAGGAGACTGGTTTTCAGGAGCTTAAAAAATCAGATTTTACTTTCGTGAGAAACACTGGAATGTGCCAAAATAATGTTCTTGGACAGTATTTTGGACTTGGGTCGGAAACACGAAACACATCCACTCATGTTCCAGATCCCTATGGAATAGAAGTTGGGAATCCTGCAGAGGTTCCTGCTGGGTATGAGGAGAGATGGATGCTCAATGTGCACGCCATTGATACACGGGGTGCGGAAAATGGTTTGGGGTGCACTGAATGCAGGTGTGATCTGTATAATGTCTCGACGGATTCACGTGGTCAGCCTTTGAGGCCAGGTTACAAAGGAGGTTTATATTGTTGTTATGATGGTGTACAGTGCAGAGTAAAACAGGGCTTTAATGGTGCCAAGAGAAGCCTATACTTGAGATATACTGTGAAGTGGGTTGATTGGTCTGATGCAGTTGTGCCTGTCAAGATTTATATCTTTGATGTCACTGACAGGATGAATCATTCAGCAGGACCTTCTATTGTACATGATTGCAGGGTTGAATATAATGTCGAAGAGTCTTGCAGTGCCGCTAGTACAGCTAGTGACAGGTGCTTAGACAACCAATGGGCAATGGTTACCATGCCAACTGGTGGTTATGTCGTCTATGGTGTAGCCCATCAGCACACAGGGGGGCTTGGTTCAACTCTATATGGAGAGGATGGAAGGATTCTATGTTCTTCAATACCAATTTATGGAAAAGGAAAGGAAGCTGGAAATGAGGCCGGTTATATTGTAGGAATGTCCACTTGTTATCCTCAACCAGGCTCTGTCAAAATAAATGATGGGGAGACTCTGAGTGTGTTATCTAACTATAGCAGCACACAGACTCACACAGGAGTAATGGGTCTCTTCTACATTTTGGTTGCAGACACCCTGCCAAAGTCCTCCTTGCTTAGCTTGGACGCTCCACTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SURNod19

Protein Analysis

462

Amino Acids

51.15

Weight (kDa)

5.92

Isoelectric Point (pI)

35.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 693
Acc36I ACCTGC 1 cut(s) 693
AccB1I GGYRCC 2 cut(s) 259, 824
AccB7I CCANNNNNTGG 2 cut(s) 1061, 1163
AciI CCGC 2 cut(s) 674, 999
AclI AACGTT 1 cut(s) 127
AclWI GGATC 2 cut(s) 274, 572
AcuI CTGAAG 1 cut(s) 360
AcvI CACGTG 1 cut(s) 737
AcyI GRCGYC 1 cut(s) 260
AdeI CACNNNGTG 1 cut(s) 671
AfaI GTAC 4 cut(s) 168, 795, 954, 1006
AfiI CCNNNNNNNGG 4 cut(s) 397, 1061, 1163, 1232
AgsI TTSAA 6 cut(s) 137, 334, 377, 971, 1113, 1152
AjnI CCWGG 4 cut(s) 221, 262, 754, 1231
AjuI GAANNNNNNNTTGG 2 cut(s) 501, 533
AloI GAACNNNNNNTCC 2 cut(s) 1129, 1161
AluBI AGCT 5 cut(s) 158, 463, 1010, 1181, 1368
AluI AGCT 5 cut(s) 158, 463, 1010, 1181, 1368
Alw21I GWGCWC 2 cut(s) 654, 695
Alw26I GTCTC 5 cut(s) 38, 440, 727, 1253, 1322
Alw44I GTGCAC 2 cut(s) 650, 691
AlwI GGATC 2 cut(s) 274, 572
AlwNI CAGNNNCTG 1 cut(s) 1238
AoxI GGCC 3 cut(s) 319, 752, 1191
ApaLI GTGCAC 2 cut(s) 650, 691
ApeKI GCWGC 1 cut(s) 1287
AspLEI GCGC 1 cut(s) 262
AspS9I GGNCC 1 cut(s) 941
AsuC2I CCSGG 1 cut(s) 421
AvaII GGWCC 1 cut(s) 941
BaeGI GKGCMC 2 cut(s) 654, 695
BanI GGYRCC 2 cut(s) 259, 824
BbrPI CACGTG 1 cut(s) 737
Bbv12I GWGCWC 2 cut(s) 654, 695
BbvI GCAGC 1 cut(s) 1299
BccI CCATC 7 cut(s) 374, 399, 630, 782, 1095, 1124, 1247
BciT130I CCWGG 4 cut(s) 223, 264, 756, 1233
BcnI CCSGG 1 cut(s) 421
BcoDI GTCTC 5 cut(s) 38, 440, 727, 1253, 1322
BfaI CTAG 4 cut(s) 164, 408, 1002, 1011
BfmI CTRYAG 2 cut(s) 606, 1282
BfoI RGCGCY 1 cut(s) 263
BfuAI ACCTGC 1 cut(s) 693
BglI GCCNNNNNGGC 1 cut(s) 751
BisI GCNGC 2 cut(s) 999, 1288
BlpI GCTNAGC 1 cut(s) 1364
BlsI GCNGC 2 cut(s) 1000, 1289
BmcAI AGTACT 1 cut(s) 168
Bme1390I CCNGG 5 cut(s) 223, 264, 421, 756, 1233
Bme18I GGWCC 1 cut(s) 941
BmgT120I GGNCC 1 cut(s) 941
BmiI GGNNCC 3 cut(s) 261, 615, 826
BmrFI CCNGG 5 cut(s) 223, 264, 421, 756, 1233
BmsI GCATC 2 cut(s) 630, 868
BoxI GACNNNNGTC 1 cut(s) 541
Bpu1102I GCTNAGC 1 cut(s) 1364
BpuEI CTTGAG 2 cut(s) 308, 865
BpuMI CCSGG 1 cut(s) 421
BsaAI YACGTR 1 cut(s) 737
BsaBI GATNNNNATC 2 cut(s) 12, 902
BsaHI GRCGYC 1 cut(s) 260
BsaI GGTCTC 1 cut(s) 1322
Bsc4I CCNNNNNNNGG 4 cut(s) 397, 1061, 1163, 1232
Bse118I RCCGGY 1 cut(s) 1193
Bse1I ACTGG 4 cut(s) 174, 454, 502, 1063
Bse3DI GCAATG 1 cut(s) 1047
Bse8I GATNNNNATC 2 cut(s) 12, 902
BseBI CCWGG 4 cut(s) 223, 264, 756, 1233
BseGI GGATG 5 cut(s) 366, 560, 645, 930, 1135
BseJI GATNNNNATC 2 cut(s) 12, 902
BseLI CCNNNNNNNGG 4 cut(s) 397, 1061, 1163, 1232
BseMI GCAATG 1 cut(s) 1047
BseMII CTCAG 2 cut(s) 93, 1256
BseNI ACTGG 4 cut(s) 174, 454, 502, 1063
BseRI GAGGAG 2 cut(s) 458, 644
BseSI GKGCMC 2 cut(s) 654, 695
BseXI GCAGC 1 cut(s) 1299
BseYI CCCAGC 1 cut(s) 620
BsgI GTGCAG 1 cut(s) 820
BshFI GGCC 3 cut(s) 321, 754, 1193
BshNI GGYRCC 2 cut(s) 259, 824
BsiHKAI GWGCWC 2 cut(s) 654, 695
BsiSI CCGG 2 cut(s) 421, 1194
BslI CCNNNNNNNGG 4 cut(s) 397, 1061, 1163, 1232
BsmAI GTCTC 5 cut(s) 38, 440, 727, 1253, 1322
BsmI GAATGC 1 cut(s) 704
BsnI GGCC 3 cut(s) 321, 754, 1193
Bso31I GGTCTC 1 cut(s) 1322
Bsp1286I GDGCHC 2 cut(s) 654, 695
Bsp1407I TGTACA 2 cut(s) 793, 952
Bsp143I GATC 3 cut(s) 266, 577, 709
Bsp1720I GCTNAGC 1 cut(s) 1364
BspACI CCGC 2 cut(s) 674, 999
BspANI GGCC 3 cut(s) 321, 754, 1193
BspCNI CTCAG 2 cut(s) 92, 1257
BspLI GGNNCC 3 cut(s) 261, 615, 826
BspMAI CTGCAG 1 cut(s) 610
BspMI ACCTGC 1 cut(s) 693
BspPI GGATC 2 cut(s) 274, 572
BspT107I GGYRCC 2 cut(s) 259, 824
BspTNI GGTCTC 1 cut(s) 1322
BsrDI GCAATG 1 cut(s) 1047
BsrFI RCCGGY 1 cut(s) 1193
BsrGI TGTACA 2 cut(s) 793, 952
BsrI ACTGG 4 cut(s) 174, 454, 502, 1063
BssAI RCCGGY 1 cut(s) 1193
BssMI GATC 3 cut(s) 266, 577, 709
BssNI GRCGYC 1 cut(s) 260
Bst2UI CCWGG 4 cut(s) 223, 264, 756, 1233
Bst4CI ACNGT 3 cut(s) 528, 798, 856
Bst6I CTCTTC 3 cut(s) 348, 978, 1325
BstACI GRCGYC 1 cut(s) 260
BstAPI GCANNNNNTGC 1 cut(s) 699
BstAUI TGTACA 2 cut(s) 793, 952
BstBAI YACGTR 1 cut(s) 737
BstC8I GCNNGC 1 cut(s) 654
BstDEI CTNAG 6 cut(s) 79, 216, 246, 1024, 1265, 1364
BstEII GGTNACC 2 cut(s) 205, 1045
BstENI CCTNNNNNAGG 1 cut(s) 1230
BstF5I GGATG 5 cut(s) 366, 560, 645, 930, 1135
BstH2I RGCGCY 1 cut(s) 263
BstHHI GCGC 1 cut(s) 262
BstKTI GATC 3 cut(s) 269, 580, 712
BstMAI GTCTC 5 cut(s) 38, 440, 727, 1253, 1322
BstMBI GATC 3 cut(s) 266, 577, 709
BstMWI GCNNNNNNNGC 4 cut(s) 649, 699, 751, 1007
BstNI CCWGG 4 cut(s) 223, 264, 756, 1233
BstNSI RCATGY 1 cut(s) 197
BstPAI GACNNNNGTC 1 cut(s) 541
BstPI GGTNACC 2 cut(s) 205, 1045
BstSCI CCNGG 5 cut(s) 221, 262, 419, 754, 1231
BstSFI CTRYAG 2 cut(s) 606, 1282
BstSLI GKGCMC 2 cut(s) 654, 695
BstV1I GCAGC 1 cut(s) 1299
BstX2I RGATCY 1 cut(s) 577
BstYI RGATCY 1 cut(s) 577
BsuRI GGCC 3 cut(s) 321, 754, 1193
BtsCI GGATG 5 cut(s) 366, 560, 645, 930, 1135
BtsI GCAGTG 1 cut(s) 1000
BtsIMutI CAGTG 5 cut(s) 495, 693, 803, 915, 1000
BveI ACCTGC 1 cut(s) 693
Cac8I GCNNGC 1 cut(s) 654
CaiI CAGNNNCTG 1 cut(s) 1238
CfoI GCGC 1 cut(s) 262
Cfr10I RCCGGY 1 cut(s) 1193
Cfr13I GGNCC 1 cut(s) 941
CsiI ACCWGGT 1 cut(s) 221
Csp6I GTAC 4 cut(s) 167, 794, 953, 1005
CviAII CATG 5 cut(s) 186, 194, 569, 956, 1051
CviQI GTAC 4 cut(s) 167, 794, 953, 1005
DdeI CTNAG 6 cut(s) 79, 216, 246, 1024, 1265, 1364
DinI GGCGCC 1 cut(s) 261
DpnI GATC 3 cut(s) 268, 579, 711
DpnII GATC 3 cut(s) 266, 577, 709
DraIII CACNNNGTG 1 cut(s) 671
Eam1104I CTCTTC 3 cut(s) 348, 978, 1325
EarI CTCTTC 3 cut(s) 348, 978, 1325
Eco31I GGTCTC 1 cut(s) 1322
Eco32I GATATC 1 cut(s) 295
Eco47I GGWCC 1 cut(s) 941
Eco57I CTGAAG 1 cut(s) 360
Eco72I CACGTG 1 cut(s) 737
Eco91I GGTNACC 2 cut(s) 205, 1045
EcoNI CCTNNNNNAGG 1 cut(s) 1230
EcoO109I RGGNCCY 1 cut(s) 941
EcoO65I GGTNACC 2 cut(s) 205, 1045
EcoRII CCWGG 4 cut(s) 221, 262, 754, 1231
EcoRV GATATC 1 cut(s) 295
EgeI GGCGCC 1 cut(s) 261
EheI GGCGCC 1 cut(s) 261
FaeI CATG 5 cut(s) 189, 197, 572, 959, 1054
FalI AAGNNNNNCTT 2 cut(s) 1343, 1375
FatI CATG 5 cut(s) 185, 193, 568, 955, 1050
Fnu4HI GCNGC 2 cut(s) 999, 1288
FokI GGATG 5 cut(s) 353, 547, 652, 937, 1142
Fsp4HI GCNGC 2 cut(s) 999, 1288
FspBI CTAG 4 cut(s) 164, 408, 1002, 1011
GlaI GCGC 1 cut(s) 261
GluI GCNGC 2 cut(s) 999, 1288
GsaI CCCAGC 1 cut(s) 624
HaeII RGCGCY 1 cut(s) 263
HaeIII GGCC 3 cut(s) 321, 754, 1193
HapII CCGG 2 cut(s) 421, 1194
HhaI GCGC 1 cut(s) 262
Hin1I GRCGYC 1 cut(s) 260
Hin1II CATG 5 cut(s) 189, 197, 572, 959, 1054
Hin6I GCGC 1 cut(s) 260
HinP1I GCGC 1 cut(s) 260
HpaII CCGG 2 cut(s) 421, 1194
Hpy166II GTNNAC 5 cut(s) 191, 652, 693, 794, 1215
Hpy188I TCNGA 7 cut(s) 28, 82, 475, 547, 877, 1266, 1385
Hpy188III TCNNGA 7 cut(s) 325, 377, 458, 487, 575, 724, 895
Hpy8I GTNNAC 5 cut(s) 191, 652, 693, 794, 1215
Hpy99I CGWCG 1 cut(s) 730
HpyAV CCTTC 4 cut(s) 106, 383, 954, 1128
HpyCH4III ACNGT 3 cut(s) 528, 798, 856
HpyCH4IV ACGT 2 cut(s) 127, 736
HpyF10VI GCNNNNNNNGC 4 cut(s) 649, 699, 751, 1007
HpyF3I CTNAG 6 cut(s) 79, 216, 246, 1024, 1265, 1364
HpySE526I ACGT 2 cut(s) 127, 736
Hsp92I GRCGYC 1 cut(s) 260
Hsp92II CATG 5 cut(s) 189, 197, 572, 959, 1054
HspAI GCGC 1 cut(s) 260
KasI GGCGCC 1 cut(s) 259
Kzo9I GATC 3 cut(s) 266, 577, 709
LmnI GCTCC 2 cut(s) 460, 1381
Lsp1109I GCAGC 1 cut(s) 1299
LweI GCATC 2 cut(s) 630, 868
MabI ACCWGGT 1 cut(s) 221
MaeI CTAG 4 cut(s) 164, 408, 1002, 1011
MaeII ACGT 2 cut(s) 127, 736
MaeIII GTNAC 5 cut(s) 205, 758, 913, 1013, 1045
MalI GATC 3 cut(s) 268, 579, 711
MboI GATC 3 cut(s) 266, 577, 709
MboII GAAGA 4 cut(s) 365, 995, 1140, 1312
MflI RGATCY 1 cut(s) 577
MhlI GDGCHC 2 cut(s) 654, 695
MluCI AATT 2 cut(s) 345, 1158
Mly113I GGCGCC 1 cut(s) 260
MlyI GAGTC 5 cut(s) 17, 57, 995, 1255, 1291
MmeI TCCRAC 2 cut(s) 61, 525
MseI TTAA 2 cut(s) 465, 819
MslI CAYNNNNRTG 1 cut(s) 500
MspI CCGG 2 cut(s) 421, 1194
MspR9I CCNGG 5 cut(s) 223, 264, 421, 756, 1233
Mva1269I GAATGC 1 cut(s) 704
MvaI CCWGG 4 cut(s) 223, 264, 756, 1233
MwoI GCNNNNNNNGC 4 cut(s) 649, 699, 751, 1007
NarI GGCGCC 1 cut(s) 260
NciI CCSGG 1 cut(s) 421
NdeII GATC 3 cut(s) 266, 577, 709
NlaIII CATG 5 cut(s) 189, 197, 572, 959, 1054
NlaIV GGNNCC 3 cut(s) 261, 615, 826
NmuCI GTSAC 2 cut(s) 913, 1013
NspI RCATGY 1 cut(s) 197
PaqCI CACCTGC 1 cut(s) 693
PctI GAATGC 1 cut(s) 704
PfeI GAWTC 5 cut(s) 361, 601, 731, 928, 1138
PflFI GACNNNGTC 1 cut(s) 223
PflMI CCANNNNNTGG 2 cut(s) 1061, 1163
PkrI GCNGC 2 cut(s) 1000, 1289
PleI GAGTC 5 cut(s) 17, 57, 994, 1255, 1291
PluTI GGCGCC 1 cut(s) 263
PmaCI CACGTG 1 cut(s) 737
PmlI CACGTG 1 cut(s) 737
PpsI GAGTC 5 cut(s) 17, 57, 994, 1255, 1291
Ppu21I YACGTR 1 cut(s) 737
PpuMI RGGWCCY 1 cut(s) 941
PshAI GACNNNNGTC 1 cut(s) 541
Psp1406I AACGTT 1 cut(s) 127
Psp5II RGGWCCY 1 cut(s) 941
Psp6I CCWGG 4 cut(s) 221, 262, 754, 1231
PspCI CACGTG 1 cut(s) 737
PspEI GGTNACC 2 cut(s) 205, 1045
PspFI CCCAGC 1 cut(s) 620
PspGI CCWGG 4 cut(s) 221, 262, 754, 1231
PspN4I GGNNCC 3 cut(s) 261, 615, 826
PspPI GGNCC 1 cut(s) 941
PspPPI RGGWCCY 1 cut(s) 941
PsrI GAACNNNNNNTAC 2 cut(s) 172, 204
PstI CTGCAG 1 cut(s) 610
PstNI CAGNNNCTG 1 cut(s) 1238
PsuI RGATCY 1 cut(s) 577
PsyI GACNNNGTC 1 cut(s) 223
RsaI GTAC 4 cut(s) 168, 795, 954, 1006
RsaNI GTAC 4 cut(s) 167, 794, 953, 1005
RseI CAYNNNNRTG 1 cut(s) 500
SaqAI TTAA 2 cut(s) 465, 819
SatI GCNGC 2 cut(s) 999, 1288
Sau3AI GATC 3 cut(s) 266, 577, 709
Sau96I GGNCC 1 cut(s) 941
ScaI AGTACT 1 cut(s) 168
SchI GAGTC 5 cut(s) 17, 57, 995, 1255, 1291
ScrFI CCNGG 5 cut(s) 223, 264, 421, 756, 1233
SduI GDGCHC 2 cut(s) 654, 695
SexAI ACCWGGT 1 cut(s) 221
SfaNI GCATC 2 cut(s) 630, 868
SfcI CTRYAG 2 cut(s) 606, 1282
SfoI GGCGCC 1 cut(s) 261
SinI GGWCC 1 cut(s) 941
SmiMI CAYNNNNRTG 1 cut(s) 500
SmlI CTYRAG 2 cut(s) 323, 844
SmoI CTYRAG 2 cut(s) 323, 844
Sse9I AATT 2 cut(s) 345, 1158
SsiI CCGC 2 cut(s) 674, 999
SspDI GGCGCC 1 cut(s) 259
SspI AATATT 1 cut(s) 284
SspMI CTAG 4 cut(s) 164, 408, 1002, 1011
StyD4I CCNGG 5 cut(s) 221, 262, 419, 754, 1231
TaaI ACNGT 3 cut(s) 528, 798, 856
TaiI ACGT 2 cut(s) 130, 739
TaqI TCGA 2 cut(s) 725, 981
TasI AATT 2 cut(s) 345, 1158
TatI WGTACW 4 cut(s) 166, 793, 952, 1004
TauI GCSGC 1 cut(s) 1001
TfiI GAWTC 5 cut(s) 361, 601, 731, 928, 1138
Tru1I TTAA 2 cut(s) 465, 819
Tru9I TTAA 2 cut(s) 465, 819
TscAI CASTG 5 cut(s) 502, 700, 803, 922, 1000
TseFI GTSAC 2 cut(s) 913, 1013
TseI GCWGC 1 cut(s) 1287
Tsp45I GTSAC 2 cut(s) 913, 1013
TspDTI ATGAA 3 cut(s) 17, 366, 941
TspGWI ACGGA 1 cut(s) 743
TspRI CASTG 5 cut(s) 502, 700, 803, 922, 1000
Tth111I GACNNNGTC 1 cut(s) 223
Van91I CCANNNNNTGG 2 cut(s) 1061, 1163
VneI GTGCAC 2 cut(s) 650, 691
VpaK11BI GGWCC 1 cut(s) 941
XagI CCTNNNNNAGG 1 cut(s) 1230
XceI RCATGY 1 cut(s) 197
XspI CTAG 4 cut(s) 164, 408, 1002, 1011
ZrmI AGTACT 1 cut(s) 168
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.