Rh7BG096900

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0001567
Physical Location & Seq
Reverse (-)
7144641 .. 7147993
3353 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG096900.1

Sequence Viewer

Length: 1179 bp
ATGAATAAGGTTAAGACCAGGACTAGCGTTTATGTCTCCCCTAAGTTTGTGTTGGAACCAGGGTCAGTTGCAGACAAGTATTTCCATAACATTCACTTTCCAAGAGGTCATATTGCTATGAAGTATTTCAATGCTGAAGTGATCGATGAACAAGGGAATCCTATTCCTCTTCATGAGACTTATCTGCATCATTGGGTTATTGAAAGATATTACGCCCAGGCAAGTTATGTGGAACCAGAGCTGAATGGTTTCGAGGATATTAAAGATCCGGATTTTAAGATTGTGAGAAATAGTGGATTGTGCCAGAATAATGTTCTTGGTCAGTACTATGGACTCGGGTCAGAAACTAGAAAGACAGATACACATGTACTGGATCCTTTTGGAATAGAGATTGGCAACCCTGCAGAGATTCCTGCTGGATATGAGGAGAGATGGATGCTCAATGTTCATGCTATTGATACTCGGGGCGCAGAGGATAGGTTGGGATGCACTGAATGCAGGTGTGATCTGTATAATGTAACAAAAGATGGACGAGGTCAGCCGTTGAGGCCAGGGTACACGGGGGGTTTGCACTGCTGTTATGATGGTACACGGTGCAGCGTCAAACAAGGCTATAATGGTGTCAAGAGAAGCCTCTACTTGAGATACACTGTGAAGTGGGTTGATTGGTCTGATTCTATTGTGCCTGTCAAGATTTATATCTTTGATGTCACTGATAGAACGGATCATTCAGGAGGACCGTCTCTTCAACATGATTGCCAGATCGAATATGATGTTGAGCCTTGCAGTACTGTTGATATGGTAAATGATCAATGCTTTGACAATCAAAGGGCAATGATTACTATGCCAACTGGTGGTTATATCGTATATGGTGTAGCCCATCAGCACACTGGGGGGCGCGGCTCAACTCTATATGGAGAGGACGGACGGGTTCTATGTTCATCAGTACCAATATATGGGCAAAGCGAGGAAGTAGGAGACGAGGCTGGTTACATTGTAGGAATGTCAACTTGCTATCCACATCCGGGCTCTGTCAAAATAAAGGATGGGAAGACTCTGGTTGTGGGATCTAATTACAGCAGCTCGCGGCCGCATATCGGAGTCATGGGCCTCTTCTACATTTTGGTTGCAGAGCACTTGCCAAAGTCCTCCTTGCTTAGCTTGGACTCTTCACTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SURNod19

Protein Analysis

392

Amino Acids

43.8

Weight (kDa)

5.72

Isoelectric Point (pI)

38.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SURNod19 PF07712 5 - 379 1e-183 Stress up-regulated Nod 19
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 489
Acc36I ACCTGC 1 cut(s) 489
AccB7I CCANNNNNTGG 2 cut(s) 854, 956
AccII CGCG 2 cut(s) 900, 1087
AccIII TCCGGA 1 cut(s) 268
AciI CCGC 3 cut(s) 900, 1087, 1091
AclWI GGATC 5 cut(s) 260, 368, 381, 732, 1075
AcoI YGGCCR 1 cut(s) 1088
AcuI CTGAAG 1 cut(s) 156
AfaI GTAC 6 cut(s) 326, 369, 557, 589, 790, 948
AfiI CCNNNNNNNGG 4 cut(s) 854, 956, 1025, 1097
AflIII ACRYGT 1 cut(s) 364
AgsI TTSAA 3 cut(s) 130, 203, 749
AjnI CCWGG 4 cut(s) 17, 58, 216, 550
AluBI AGCT 3 cut(s) 241, 1083, 1161
AluI AGCT 3 cut(s) 241, 1083, 1161
Alw21I GWGCWC 1 cut(s) 1137
Alw26I GTCTC 4 cut(s) 40, 170, 747, 972
AlwI GGATC 5 cut(s) 260, 368, 381, 732, 1075
Ama87I CYCGRG 2 cut(s) 335, 462
Aor13HI TCCGGA 1 cut(s) 268
AoxI GGCC 3 cut(s) 548, 1088, 1108
ApeKI GCWGC 2 cut(s) 597, 1080
Asp700I GAANNNNTTC 2 cut(s) 125, 248
AspLEI GCGC 2 cut(s) 470, 900
AspS9I GGNCC 2 cut(s) 737, 1108
AsuC2I CCSGG 1 cut(s) 1026
AvaI CYCGRG 2 cut(s) 335, 462
AvaII GGWCC 1 cut(s) 737
BaeI ACNNNNGTAYC 2 cut(s) 351, 384
BamHI GGATCC 1 cut(s) 373
BanII GRGCYC 1 cut(s) 1031
BbsI GAAGAC 1 cut(s) 1058
Bbv12I GWGCWC 1 cut(s) 1137
BbvI GCAGC 2 cut(s) 609, 1092
BccI CCATC 5 cut(s) 426, 521, 578, 888, 1040
BceAI ACGGC 1 cut(s) 526
BciT130I CCWGG 4 cut(s) 19, 60, 218, 552
BclI TGATCA 1 cut(s) 808
BcnI CCSGG 1 cut(s) 1026
BcoDI GTCTC 4 cut(s) 40, 170, 747, 972
BfaI CTAG 2 cut(s) 24, 348
BfmI CTRYAG 1 cut(s) 402
BfuAI ACCTGC 1 cut(s) 489
BglI GCCNNNNNGGC 1 cut(s) 547
BisI GCNGC 5 cut(s) 598, 901, 1081, 1088, 1091
BlpI GCTNAGC 1 cut(s) 1157
BlsI GCNGC 5 cut(s) 599, 902, 1082, 1089, 1092
BmcAI AGTACT 2 cut(s) 326, 790
Bme1390I CCNGG 5 cut(s) 19, 60, 218, 552, 1026
Bme18I GGWCC 1 cut(s) 737
BmeT110I CYCGRG 2 cut(s) 335, 462
BmgT120I GGNCC 2 cut(s) 737, 1108
BmiI GGNNCC 3 cut(s) 57, 234, 375
BmrFI CCNGG 5 cut(s) 19, 60, 218, 552, 1026
BmrI ACTGGG 1 cut(s) 900
BmsI GCATC 3 cut(s) 196, 426, 476
BmuI ACTGGG 1 cut(s) 900
BoxI GACNNNNGTC 1 cut(s) 337
BpiI GAAGAC 1 cut(s) 1058
Bpu1102I GCTNAGC 1 cut(s) 1157
BpuEI CTTGAG 1 cut(s) 661
BpuMI CCSGG 1 cut(s) 1026
Bsa29I ATCGAT 1 cut(s) 144
BsaBI GATNNNNATC 1 cut(s) 698
BsaJI CCNNGG 3 cut(s) 59, 216, 551
BsaWI WCCGGW 1 cut(s) 268
Bsc4I CCNNNNNNNGG 4 cut(s) 854, 956, 1025, 1097
Bse1I ACTGG 3 cut(s) 375, 856, 895
Bse3DI GCAATG 1 cut(s) 840
Bse8I GATNNNNATC 1 cut(s) 698
BseAI TCCGGA 1 cut(s) 268
BseBI CCWGG 4 cut(s) 19, 60, 218, 552
BseCI ATCGAT 1 cut(s) 144
BseDI CCNNGG 3 cut(s) 59, 216, 551
BseGI GGATG 4 cut(s) 441, 491, 1021, 1051
BseJI GATNNNNATC 1 cut(s) 698
BseLI CCNNNNNNNGG 4 cut(s) 854, 956, 1025, 1097
BseMI GCAATG 1 cut(s) 840
BseNI ACTGG 3 cut(s) 375, 856, 895
BseRI GAGGAG 1 cut(s) 440
BseX3I CGGCCG 1 cut(s) 1088
BseXI GCAGC 2 cut(s) 609, 1092
BsgI GTGCAG 1 cut(s) 616
Bsh1236I CGCG 2 cut(s) 900, 1087
Bsh1285I CGRYCG 1 cut(s) 1091
BshFI GGCC 3 cut(s) 550, 1090, 1110
BshVI ATCGAT 1 cut(s) 144
BsiEI CGRYCG 1 cut(s) 1091
BsiHKAI GWGCWC 1 cut(s) 1137
BsiHKCI CYCGRG 2 cut(s) 335, 462
BsiSI CCGG 2 cut(s) 269, 1025
BslI CCNNNNNNNGG 4 cut(s) 854, 956, 1025, 1097
BsmAI GTCTC 4 cut(s) 40, 170, 747, 972
BsmBI CGTCTC 2 cut(s) 747, 972
BsmI GAATGC 1 cut(s) 500
BsnI GGCC 3 cut(s) 550, 1090, 1110
BsoBI CYCGRG 2 cut(s) 335, 462
Bsp1286I GDGCHC 2 cut(s) 1031, 1137
Bsp13I TCCGGA 1 cut(s) 268
Bsp143I GATC 8 cut(s) 141, 265, 373, 505, 724, 762, 808, 1067
Bsp1720I GCTNAGC 1 cut(s) 1157
BspACI CCGC 3 cut(s) 900, 1087, 1091
BspANI GGCC 3 cut(s) 550, 1090, 1110
BspDI ATCGAT 1 cut(s) 144
BspEI TCCGGA 1 cut(s) 268
BspFNI CGCG 2 cut(s) 900, 1087
BspHI TCATGA 1 cut(s) 172
BspLI GGNNCC 3 cut(s) 57, 234, 375
BspMAI CTGCAG 1 cut(s) 406
BspMI ACCTGC 1 cut(s) 489
BspPI GGATC 5 cut(s) 260, 368, 381, 732, 1075
BsrDI GCAATG 1 cut(s) 840
BsrI ACTGG 3 cut(s) 375, 856, 895
BssECI CCNNGG 3 cut(s) 59, 216, 551
BssMI GATC 8 cut(s) 141, 265, 373, 505, 724, 762, 808, 1067
Bst2UI CCWGG 4 cut(s) 19, 60, 218, 552
Bst4CI ACNGT 4 cut(s) 594, 652, 741, 793
Bst6I CTCTTC 4 cut(s) 174, 750, 1118, 1174
BstAPI GCANNNNNTGC 1 cut(s) 495
BstC8I GCNNGC 1 cut(s) 1085
BstDEI CTNAG 2 cut(s) 42, 1157
BstF5I GGATG 4 cut(s) 441, 491, 1021, 1051
BstFNI CGCG 2 cut(s) 900, 1087
BstHHI GCGC 2 cut(s) 470, 900
BstKTI GATC 8 cut(s) 144, 268, 376, 508, 727, 765, 811, 1070
BstMAI GTCTC 4 cut(s) 40, 170, 747, 972
BstMBI GATC 8 cut(s) 141, 265, 373, 505, 724, 762, 808, 1067
BstMCI CGRYCG 1 cut(s) 1091
BstMWI GCNNNNNNNGC 2 cut(s) 495, 547
BstNI CCWGG 4 cut(s) 19, 60, 218, 552
BstNSI RCATGY 1 cut(s) 368
BstPAI GACNNNNGTC 1 cut(s) 337
BstSCI CCNGG 5 cut(s) 17, 58, 216, 550, 1024
BstSFI CTRYAG 1 cut(s) 402
BstUI CGCG 2 cut(s) 900, 1087
BstV1I GCAGC 2 cut(s) 609, 1092
BstV2I GAAGAC 1 cut(s) 1058
BstX2I RGATCY 3 cut(s) 265, 373, 1067
BstYI RGATCY 3 cut(s) 265, 373, 1067
BstZI CGGCCG 1 cut(s) 1088
Bsu15I ATCGAT 1 cut(s) 144
BsuRI GGCC 3 cut(s) 550, 1090, 1110
BsuTUI ATCGAT 1 cut(s) 144
BtsCI GGATG 4 cut(s) 441, 491, 1021, 1051
BtsI GCAGTG 1 cut(s) 571
BtsIMutI CAGTG 5 cut(s) 489, 571, 648, 711, 888
BveI ACCTGC 1 cut(s) 489
Cac8I GCNNGC 1 cut(s) 1085
CciI TCATGA 1 cut(s) 172
CciNI GCGGCCGC 1 cut(s) 1088
CfoI GCGC 2 cut(s) 470, 900
Cfr13I GGNCC 2 cut(s) 737, 1108
ClaI ATCGAT 1 cut(s) 144
CseI GACGC 1 cut(s) 589
Csp6I GTAC 6 cut(s) 325, 368, 556, 588, 789, 947
CspCI CAANNNNNGTGG 2 cut(s) 210, 245
CviAII CATG 5 cut(s) 173, 365, 449, 752, 1105
CviQI GTAC 6 cut(s) 325, 368, 556, 588, 789, 947
DdeI CTNAG 2 cut(s) 42, 1157
DpnI GATC 8 cut(s) 143, 267, 375, 507, 726, 764, 810, 1069
DpnII GATC 8 cut(s) 141, 265, 373, 505, 724, 762, 808, 1067
EaeI YGGCCR 1 cut(s) 1088
EagI CGGCCG 1 cut(s) 1088
Eam1104I CTCTTC 4 cut(s) 174, 750, 1118, 1174
EarI CTCTTC 4 cut(s) 174, 750, 1118, 1174
EclXI CGGCCG 1 cut(s) 1088
Eco24I GRGCYC 1 cut(s) 1031
Eco47I GGWCC 1 cut(s) 737
Eco52I CGGCCG 1 cut(s) 1088
Eco57I CTGAAG 1 cut(s) 156
Eco88I CYCGRG 2 cut(s) 335, 462
EcoRII CCWGG 4 cut(s) 17, 58, 216, 550
EcoT38I GRGCYC 1 cut(s) 1031
Esp3I CGTCTC 2 cut(s) 747, 972
FaeI CATG 5 cut(s) 176, 368, 452, 755, 1108
FalI AAGNNNNNCTT 2 cut(s) 1136, 1168
FatI CATG 5 cut(s) 172, 364, 448, 751, 1104
FbaI TGATCA 1 cut(s) 808
Fnu4HI GCNGC 5 cut(s) 598, 901, 1081, 1088, 1091
FokI GGATG 4 cut(s) 448, 498, 1008, 1058
FriOI GRGCYC 1 cut(s) 1031
Fsp4HI GCNGC 5 cut(s) 598, 901, 1081, 1088, 1091
FspBI CTAG 2 cut(s) 24, 348
GlaI GCGC 2 cut(s) 469, 899
GluI GCNGC 5 cut(s) 598, 901, 1081, 1088, 1091
HaeIII GGCC 3 cut(s) 550, 1090, 1110
HapII CCGG 2 cut(s) 269, 1025
HgaI GACGC 1 cut(s) 589
HhaI GCGC 2 cut(s) 470, 900
Hin1II CATG 5 cut(s) 176, 368, 452, 755, 1108
Hin6I GCGC 2 cut(s) 468, 898
HinP1I GCGC 2 cut(s) 468, 898
HincII GTYRAC 1 cut(s) 1008
HindII GTYRAC 1 cut(s) 1008
HinfI GANTC 7 cut(s) 157, 333, 409, 674, 1054, 1101, 1166
HpaII CCGG 2 cut(s) 269, 1025
Hpy166II GTNNAC 3 cut(s) 558, 590, 1008
Hpy188I TCNGA 3 cut(s) 343, 673, 1100
Hpy188III TCNNGA 5 cut(s) 173, 269, 625, 691, 732
Hpy8I GTNNAC 3 cut(s) 558, 590, 1008
HpyCH4III ACNGT 4 cut(s) 594, 652, 741, 793
HpyCH4V TGCA 9 cut(s) 71, 187, 404, 489, 498, 571, 597, 786, 1130
HpyF10VI GCNNNNNNNGC 2 cut(s) 495, 547
HpyF3I CTNAG 2 cut(s) 42, 1157
Hsp92II CATG 5 cut(s) 176, 368, 452, 755, 1108
HspAI GCGC 2 cut(s) 468, 898
Kpn2I TCCGGA 1 cut(s) 268
Ksp22I TGATCA 1 cut(s) 808
Kzo9I GATC 8 cut(s) 141, 265, 373, 505, 724, 762, 808, 1067
Lsp1109I GCAGC 2 cut(s) 609, 1092
LweI GCATC 3 cut(s) 196, 426, 476
MaeI CTAG 2 cut(s) 24, 348
MaeIII GTNAC 3 cut(s) 517, 709, 989
MalI GATC 8 cut(s) 143, 267, 375, 507, 726, 764, 810, 1069
MboI GATC 8 cut(s) 141, 265, 373, 505, 724, 762, 808, 1067
MboII GAAGA 5 cut(s) 161, 737, 1063, 1105, 1161
MflI RGATCY 3 cut(s) 265, 373, 1067
MhlI GDGCHC 2 cut(s) 1031, 1137
MluCI AATT 1 cut(s) 1072
MlyI GAGTC 4 cut(s) 327, 1048, 1110, 1160
MmeI TCCRAC 1 cut(s) 33
MroI TCCGGA 1 cut(s) 268
MroXI GAANNNNTTC 2 cut(s) 125, 248
MseI TTAA 3 cut(s) 12, 261, 276
MspI CCGG 2 cut(s) 269, 1025
MspR9I CCNGG 5 cut(s) 19, 60, 218, 552, 1026
Mva1269I GAATGC 1 cut(s) 500
MvaI CCWGG 4 cut(s) 19, 60, 218, 552
MvnI CGCG 2 cut(s) 900, 1087
MwoI GCNNNNNNNGC 2 cut(s) 495, 547
NciI CCSGG 1 cut(s) 1026
NdeII GATC 8 cut(s) 141, 265, 373, 505, 724, 762, 808, 1067
NlaIII CATG 5 cut(s) 176, 368, 452, 755, 1108
NlaIV GGNNCC 3 cut(s) 57, 234, 375
NmuCI GTSAC 1 cut(s) 709
NotI GCGGCCGC 1 cut(s) 1088
NspI RCATGY 1 cut(s) 368
PagI TCATGA 1 cut(s) 172
PaqCI CACCTGC 1 cut(s) 489
PciI ACATGT 1 cut(s) 364
PctI GAATGC 1 cut(s) 500
PdmI GAANNNNTTC 2 cut(s) 125, 248
PfeI GAWTC 3 cut(s) 157, 409, 674
PflFI GACNNNGTC 1 cut(s) 534
PflMI CCANNNNNTGG 2 cut(s) 854, 956
PkrI GCNGC 5 cut(s) 599, 902, 1082, 1089, 1092
PleI GAGTC 4 cut(s) 327, 1048, 1109, 1160
PpsI GAGTC 4 cut(s) 327, 1048, 1109, 1160
PscI ACATGT 1 cut(s) 364
PshAI GACNNNNGTC 1 cut(s) 337
Psp6I CCWGG 4 cut(s) 17, 58, 216, 550
PspGI CCWGG 4 cut(s) 17, 58, 216, 550
PspN4I GGNNCC 3 cut(s) 57, 234, 375
PspPI GGNCC 2 cut(s) 737, 1108
PstI CTGCAG 1 cut(s) 406
PsuI RGATCY 3 cut(s) 265, 373, 1067
PsyI GACNNNGTC 1 cut(s) 534
RsaI GTAC 6 cut(s) 326, 369, 557, 589, 790, 948
RsaNI GTAC 6 cut(s) 325, 368, 556, 588, 789, 947
SaqAI TTAA 3 cut(s) 12, 261, 276
SatI GCNGC 5 cut(s) 598, 901, 1081, 1088, 1091
Sau3AI GATC 8 cut(s) 141, 265, 373, 505, 724, 762, 808, 1067
Sau96I GGNCC 2 cut(s) 737, 1108
ScaI AGTACT 2 cut(s) 326, 790
SchI GAGTC 4 cut(s) 327, 1048, 1110, 1160
ScrFI CCNGG 5 cut(s) 19, 60, 218, 552, 1026
SduI GDGCHC 2 cut(s) 1031, 1137
SetI ASST 8 cut(s) 12, 109, 243, 482, 503, 538, 1085, 1163
SfaNI GCATC 3 cut(s) 196, 426, 476
SfcI CTRYAG 1 cut(s) 402
SinI GGWCC 1 cut(s) 737
SmlI CTYRAG 1 cut(s) 640
SmoI CTYRAG 1 cut(s) 640
Sse9I AATT 1 cut(s) 1072
SsiI CCGC 3 cut(s) 900, 1087, 1091
SspMI CTAG 2 cut(s) 24, 348
StyD4I CCNGG 5 cut(s) 17, 58, 216, 550, 1024
TaaI ACNGT 4 cut(s) 594, 652, 741, 793
TaqI TCGA 3 cut(s) 144, 252, 765
TasI AATT 1 cut(s) 1072
TatI WGTACW 3 cut(s) 324, 367, 788
TauI GCSGC 3 cut(s) 903, 1090, 1093
TfiI GAWTC 3 cut(s) 157, 409, 674
Tru1I TTAA 3 cut(s) 12, 261, 276
Tru9I TTAA 3 cut(s) 12, 261, 276
TscAI CASTG 5 cut(s) 496, 578, 655, 718, 895
TseFI GTSAC 1 cut(s) 709
TseI GCWGC 2 cut(s) 597, 1080
Tsp45I GTSAC 1 cut(s) 709
TspDTI ATGAA 6 cut(s) 17, 134, 161, 162, 437, 930
TspGWI ACGGA 2 cut(s) 737, 939
TspRI CASTG 5 cut(s) 496, 578, 655, 718, 895
Tth111I GACNNNGTC 1 cut(s) 534
Van91I CCANNNNNTGG 2 cut(s) 854, 956
VpaK11BI GGWCC 1 cut(s) 737
XceI RCATGY 1 cut(s) 368
XcmI CCANNNNNNNNNTGG 1 cut(s) 887
XmnI GAANNNNTTC 2 cut(s) 125, 248
XspI CTAG 2 cut(s) 24, 348
ZrmI AGTACT 2 cut(s) 326, 790
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.