RLG00000030736

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0001567
Physical Location & Seq
Forward (+)
66710227 .. 66713860
3634 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000030736

Sequence Viewer

Length: 366 bp
ATGCAAGGAGGCGTAAACACTCAAAGACCCTTTCTTAACATCTGCTTTGGGATAGGCGAAGGCATCGTAGAGGCAGTTGAGGAGGACTGGAAGCCGTCGGTGGTGATGGATGGACGGGTTCTATGTTCATCAATACCAATTTATGGACAAAGCGAGGAAGTTGGAGATGAGGCTGGTTACATTGTAGGAATGTCCACTTGCTATCCACATCCAAGATCTGTCAAAATAAAGGATGGGGAGACTCTGGTTGTGGGATCTAATTACAGCAGCTCGCAGTCGCACACAGGAGTCATGGGCCTCTTCTACATTTTGGTTGCAGAGCACCTGCCAAAGTCCTCCCTTCTAAGCTTGGACTCTTCGCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SURNod19

Protein Analysis

122

Amino Acids

13.0

Weight (kDa)

4.71

Isoelectric Point (pI)

45.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SURNod19 PF07712 37 - 108 3.4e-34 Stress up-regulated Nod 19
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 333
Acc36I ACCTGC 1 cut(s) 333
AccB7I CCANNNNNTGG 1 cut(s) 143
AclWI GGATC 1 cut(s) 262
AfiI CCNNNNNNNGG 1 cut(s) 143
AluBI AGCT 2 cut(s) 270, 348
AluI AGCT 2 cut(s) 270, 348
Alw21I GWGCWC 1 cut(s) 324
Alw26I GTCTC 1 cut(s) 233
AlwI GGATC 1 cut(s) 262
AoxI GGCC 1 cut(s) 295
ApeKI GCWGC 1 cut(s) 267
AspS9I GGNCC 1 cut(s) 295
AsuHPI GGTGA 1 cut(s) 115
Bbv12I GWGCWC 1 cut(s) 324
BbvI GCAGC 1 cut(s) 279
BccI CCATC 3 cut(s) 100, 104, 227
BceAI ACGGC 1 cut(s) 79
BcoDI GTCTC 1 cut(s) 233
BfuAI ACCTGC 1 cut(s) 333
BglII AGATCT 1 cut(s) 215
BisI GCNGC 1 cut(s) 268
BlsI GCNGC 1 cut(s) 269
BmgT120I GGNCC 1 cut(s) 295
BmsI GCATC 1 cut(s) 72
Bsc4I CCNNNNNNNGG 1 cut(s) 143
Bse1I ACTGG 1 cut(s) 92
BseGI GGATG 3 cut(s) 115, 208, 238
BseLI CCNNNNNNNGG 1 cut(s) 143
BseNI ACTGG 1 cut(s) 92
BseRI GAGGAG 1 cut(s) 95
BseXI GCAGC 1 cut(s) 279
BshFI GGCC 1 cut(s) 297
BsiHKAI GWGCWC 1 cut(s) 324
BslI CCNNNNNNNGG 1 cut(s) 143
BsmAI GTCTC 1 cut(s) 233
BsnI GGCC 1 cut(s) 297
Bsp1286I GDGCHC 1 cut(s) 324
Bsp143I GATC 2 cut(s) 215, 254
BspANI GGCC 1 cut(s) 297
BspMI ACCTGC 1 cut(s) 333
BspPI GGATC 1 cut(s) 262
BsrI ACTGG 1 cut(s) 92
BssMI GATC 2 cut(s) 215, 254
Bst6I CTCTTC 2 cut(s) 305, 361
BstC8I GCNNGC 1 cut(s) 272
BstDEI CTNAG 1 cut(s) 344
BstF5I GGATG 3 cut(s) 115, 208, 238
BstKTI GATC 2 cut(s) 218, 257
BstMAI GTCTC 1 cut(s) 233
BstMBI GATC 2 cut(s) 215, 254
BstV1I GCAGC 1 cut(s) 279
BstX2I RGATCY 2 cut(s) 215, 254
BstYI RGATCY 2 cut(s) 215, 254
BsuRI GGCC 1 cut(s) 297
BtsCI GGATG 3 cut(s) 115, 208, 238
BveI ACCTGC 1 cut(s) 333
Cac8I GCNNGC 1 cut(s) 272
Cfr13I GGNCC 1 cut(s) 295
CviAII CATG 1 cut(s) 292
CviJI RGCY 5 cut(s) 94, 173, 270, 297, 348
CviKI_1 RGCY 5 cut(s) 94, 173, 270, 297, 348
DdeI CTNAG 1 cut(s) 344
DpnI GATC 2 cut(s) 217, 256
DpnII GATC 2 cut(s) 215, 254
Eam1104I CTCTTC 2 cut(s) 305, 361
EarI CTCTTC 2 cut(s) 305, 361
FaeI CATG 1 cut(s) 295
FaiI YATR 3 cut(s) 124, 144, 293
FatI CATG 1 cut(s) 291
Fnu4HI GCNGC 1 cut(s) 268
FokI GGATG 3 cut(s) 122, 195, 245
Fsp4HI GCNGC 1 cut(s) 268
GluI GCNGC 1 cut(s) 268
HaeIII GGCC 1 cut(s) 297
Hin1II CATG 1 cut(s) 295
HindIII AAGCTT 1 cut(s) 346
HinfI GANTC 3 cut(s) 241, 288, 353
HphI GGTGA 1 cut(s) 115
Hpy166II GTNNAC 2 cut(s) 16, 195
Hpy8I GTNNAC 2 cut(s) 16, 195
Hpy99I CGWCG 1 cut(s) 100
HpyAV CCTTC 2 cut(s) 53, 350
HpyCH4V TGCA 2 cut(s) 4, 317
HpyF3I CTNAG 1 cut(s) 344
Hsp92II CATG 1 cut(s) 295
Kzo9I GATC 2 cut(s) 215, 254
LpnPI CCDG 5 cut(s) 73, 159, 230, 270, 338
Lsp1109I GCAGC 1 cut(s) 279
LweI GCATC 1 cut(s) 72
MaeIII GTNAC 1 cut(s) 176
MalI GATC 2 cut(s) 217, 256
MboI GATC 2 cut(s) 215, 254
MboII GAAGA 2 cut(s) 292, 348
MflI RGATCY 2 cut(s) 215, 254
MhlI GDGCHC 1 cut(s) 324
MluCI AATT 2 cut(s) 138, 259
MlyI GAGTC 3 cut(s) 235, 297, 347
MmeI TCCRAC 1 cut(s) 142
MnlI CCTC 7 cut(s) 64, 73, 76, 148, 163, 308, 346
MseI TTAA 1 cut(s) 36
NdeII GATC 2 cut(s) 215, 254
NlaIII CATG 1 cut(s) 295
PaqCI CACCTGC 1 cut(s) 333
PflMI CCANNNNNTGG 1 cut(s) 143
PkrI GCNGC 1 cut(s) 269
PleI GAGTC 3 cut(s) 235, 296, 347
PpsI GAGTC 3 cut(s) 235, 296, 347
PspPI GGNCC 1 cut(s) 295
PsuI RGATCY 2 cut(s) 215, 254
SaqAI TTAA 1 cut(s) 36
SatI GCNGC 1 cut(s) 268
Sau3AI GATC 2 cut(s) 215, 254
Sau96I GGNCC 1 cut(s) 295
SchI GAGTC 3 cut(s) 235, 297, 347
SduI GDGCHC 1 cut(s) 324
SetI ASST 3 cut(s) 272, 327, 350
SfaNI GCATC 1 cut(s) 72
Sse9I AATT 2 cut(s) 138, 259
TasI AATT 2 cut(s) 138, 259
Tru1I TTAA 1 cut(s) 36
Tru9I TTAA 1 cut(s) 36
TseI GCWGC 1 cut(s) 267
TspDTI ATGAA 1 cut(s) 117
Van91I CCANNNNNTGG 1 cut(s) 143
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.