Rh7DG096900

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0001567
Physical Location & Seq
Reverse (-)
8123680 .. 8127021
3342 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG096900.1

Sequence Viewer

Length: 873 bp
ATGGCACCTTCTTTTCAAAGTTTGGTTCTTTTGTTAGCTGTGCTAGTGCTGGGATTAAGCCTACCATGGTCAGATGCTATTCGGATCAATAAAGTTAAGACCAGGACTAGCGTTTATGTCTCCCCTAAGCTTGTGTTGGAACCAGGGTCAGTTGCAGACAAGTATTTCTATAACATTAACTTCCCAAGAGGTCATATTGCTATCAAGTATTTCAATGCTGAAGTGATCGATGAAGAAGGGAATCCTATTCCTCTTCACGAGACTTATCTGCATCACTGGGTTCTTGGAAGATATTATGGCAGGACAAGTTATGTGGAACCAGAGCAGATTGGGTTCGATGATATTGACGAATCAGATTTTCAGTTCGTGAGAAACAGTGGTTTGTGCCAGAATAATGTTCTTGGACAGTACTATGGACTCGGGTCAGAAACACGAAAGACAGACACACATGTACCGGATCCTTTTGGAATCGAGATTGGCAACCCTGCAGAGATTCCTGCTGGATATGAGGAGAGATGGATGCTCAATGTTCATGCTATTGATACTCGGGGCGCAGAGGAGAGGTTGGGATGCACTGAATGCAGGTGTGATCTGTATAATGTAACAAAAGATGGACGAGGTCGGCCGTTGAGGCCAGGATACACTGGGGGTTTGCACTGCTGTTATGATGGTACACGGTGCAGCGTAAAACAAGGCTATAATGGTGTCAAGAGAAGCCTCTACTTGAGATACACAATGAAGTGGGTTGATTGGTCTGATTCTATTGTGCCGGTCAAGATTTATATCTTTGATGCCACTGATAGAACGGATCATTCTTCTCTTCAACATGATTGCCGGGTAAGTGAACTTAACACATTGCATAGAAAGTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SURNod19

Protein Analysis

290

Amino Acids

33.06

Weight (kDa)

6.21

Isoelectric Point (pI)

39.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SURNod19 PF07712 33 - 280 8.6e-118 Stress up-regulated Nod 19
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 573
Acc36I ACCTGC 1 cut(s) 573
AccB1I GGYRCC 1 cut(s) 4
AclWI GGATC 4 cut(s) 92, 452, 465, 816
AcoI YGGCCR 1 cut(s) 623
AcuI CTGAAG 1 cut(s) 240
AfaI GTAC 3 cut(s) 410, 453, 673
AflIII ACRYGT 1 cut(s) 448
AgsI TTSAA 3 cut(s) 17, 214, 824
AjnI CCWGG 3 cut(s) 101, 142, 634
AluBI AGCT 2 cut(s) 38, 130
AluI AGCT 2 cut(s) 38, 130
Alw26I GTCTC 2 cut(s) 124, 254
AlwI GGATC 4 cut(s) 92, 452, 465, 816
Ama87I CYCGRG 2 cut(s) 419, 546
AoxI GGCC 2 cut(s) 623, 632
ApeKI GCWGC 1 cut(s) 681
AspLEI GCGC 1 cut(s) 554
AsuC2I CCSGG 1 cut(s) 836
AvaI CYCGRG 2 cut(s) 419, 546
BaeI ACNNNNGTAYC 2 cut(s) 435, 468
BamHI GGATCC 1 cut(s) 457
BanI GGYRCC 1 cut(s) 4
BauI CACGAG 1 cut(s) 257
BbvI GCAGC 1 cut(s) 693
BccI CCATC 3 cut(s) 510, 605, 662
BceAI ACGGC 1 cut(s) 610
BciT130I CCWGG 3 cut(s) 103, 144, 636
BciVI GTATCC 1 cut(s) 632
BcnI CCSGG 1 cut(s) 836
BcoDI GTCTC 2 cut(s) 124, 254
BfaI CTAG 2 cut(s) 44, 108
BfmI CTRYAG 1 cut(s) 486
BfuAI ACCTGC 1 cut(s) 573
BfuI GTATCC 1 cut(s) 632
BglI GCCNNNNNGGC 1 cut(s) 631
BisI GCNGC 1 cut(s) 682
BlsI GCNGC 1 cut(s) 683
BmcAI AGTACT 1 cut(s) 410
Bme1390I CCNGG 4 cut(s) 103, 144, 636, 836
BmeT110I CYCGRG 2 cut(s) 419, 546
BmiI GGNNCC 4 cut(s) 6, 141, 318, 459
BmrFI CCNGG 4 cut(s) 103, 144, 636, 836
BmrI ACTGGG 2 cut(s) 286, 654
BmsI GCATC 5 cut(s) 64, 280, 510, 560, 781
BmuI ACTGGG 2 cut(s) 286, 654
BoxI GACNNNNGTC 1 cut(s) 421
Bpu10I CCTNAGC 1 cut(s) 126
BpuEI CTTGAG 1 cut(s) 745
BpuMI CCSGG 1 cut(s) 836
Bsa29I ATCGAT 1 cut(s) 228
BsaBI GATNNNNATC 1 cut(s) 782
BsaJI CCNNGG 2 cut(s) 65, 143
BsaWI WCCGGW 1 cut(s) 454
Bse118I RCCGGY 1 cut(s) 769
Bse1I ACTGG 2 cut(s) 281, 649
Bse3DI GCAATG 1 cut(s) 854
Bse8I GATNNNNATC 1 cut(s) 782
BseBI CCWGG 3 cut(s) 103, 144, 636
BseCI ATCGAT 1 cut(s) 228
BseDI CCNNGG 2 cut(s) 65, 143
BseGI GGATG 2 cut(s) 525, 575
BseJI GATNNNNATC 1 cut(s) 782
BseMI GCAATG 1 cut(s) 854
BseNI ACTGG 2 cut(s) 281, 649
BseRI GAGGAG 2 cut(s) 524, 572
BseX3I CGGCCG 1 cut(s) 623
BseXI GCAGC 1 cut(s) 693
BseYI CCCAGC 1 cut(s) 49
BsgI GTGCAG 1 cut(s) 700
Bsh1285I CGRYCG 1 cut(s) 626
BshFI GGCC 2 cut(s) 625, 634
BshNI GGYRCC 1 cut(s) 4
BshVI ATCGAT 1 cut(s) 228
BsiEI CGRYCG 1 cut(s) 626
BsiHKCI CYCGRG 2 cut(s) 419, 546
BsiSI CCGG 3 cut(s) 455, 770, 835
BsmAI GTCTC 2 cut(s) 124, 254
BsmI GAATGC 1 cut(s) 584
BsnI GGCC 2 cut(s) 625, 634
BsoBI CYCGRG 2 cut(s) 419, 546
Bsp143I GATC 5 cut(s) 84, 225, 457, 589, 808
Bsp19I CCATGG 1 cut(s) 65
BspANI GGCC 2 cut(s) 625, 634
BspDI ATCGAT 1 cut(s) 228
BspLI GGNNCC 4 cut(s) 6, 141, 318, 459
BspMAI CTGCAG 1 cut(s) 490
BspMI ACCTGC 1 cut(s) 573
BspPI GGATC 4 cut(s) 92, 452, 465, 816
BspT107I GGYRCC 1 cut(s) 4
BsrDI GCAATG 1 cut(s) 854
BsrFI RCCGGY 1 cut(s) 769
BsrI ACTGG 2 cut(s) 281, 649
BssAI RCCGGY 1 cut(s) 769
BssECI CCNNGG 2 cut(s) 65, 143
BssMI GATC 5 cut(s) 84, 225, 457, 589, 808
BssSI CACGAG 1 cut(s) 257
BssT1I CCWWGG 1 cut(s) 65
Bst2BI CACGAG 1 cut(s) 257
Bst2UI CCWGG 3 cut(s) 103, 144, 636
Bst4CI ACNGT 3 cut(s) 377, 408, 678
Bst6I CTCTTC 2 cut(s) 258, 825
BstAPI GCANNNNNTGC 1 cut(s) 579
BstDEI CTNAG 1 cut(s) 126
BstDSI CCRYGG 1 cut(s) 65
BstF5I GGATG 2 cut(s) 525, 575
BstHHI GCGC 1 cut(s) 554
BstKTI GATC 5 cut(s) 87, 228, 460, 592, 811
BstMAI GTCTC 2 cut(s) 124, 254
BstMBI GATC 5 cut(s) 84, 225, 457, 589, 808
BstMCI CGRYCG 1 cut(s) 626
BstMWI GCNNNNNNNGC 2 cut(s) 579, 631
BstNI CCWGG 3 cut(s) 103, 144, 636
BstNSI RCATGY 1 cut(s) 452
BstPAI GACNNNNGTC 1 cut(s) 421
BstSCI CCNGG 4 cut(s) 101, 142, 634, 834
BstSFI CTRYAG 1 cut(s) 486
BstV1I GCAGC 1 cut(s) 693
BstX2I RGATCY 1 cut(s) 457
BstYI RGATCY 1 cut(s) 457
BstZI CGGCCG 1 cut(s) 623
Bsu15I ATCGAT 1 cut(s) 228
BsuI GTATCC 1 cut(s) 632
BsuRI GGCC 2 cut(s) 625, 634
BsuTUI ATCGAT 1 cut(s) 228
BtgI CCRYGG 1 cut(s) 65
BtsCI GGATG 2 cut(s) 525, 575
BtsI GCAGTG 1 cut(s) 655
BtsIMutI CAGTG 6 cut(s) 274, 382, 573, 642, 655, 795
BveI ACCTGC 1 cut(s) 573
CfoI GCGC 1 cut(s) 554
Cfr10I RCCGGY 1 cut(s) 769
ClaI ATCGAT 1 cut(s) 228
Csp6I GTAC 3 cut(s) 409, 452, 672
CspCI CAANNNNNGTGG 2 cut(s) 294, 329
CviAII CATG 4 cut(s) 66, 449, 533, 827
CviJI RGCY 7 cut(s) 38, 60, 130, 625, 634, 696, 717
CviKI_1 RGCY 7 cut(s) 38, 60, 130, 625, 634, 696, 717
CviQI GTAC 3 cut(s) 409, 452, 672
DdeI CTNAG 1 cut(s) 126
DpnI GATC 5 cut(s) 86, 227, 459, 591, 810
DpnII GATC 5 cut(s) 84, 225, 457, 589, 808
EaeI YGGCCR 1 cut(s) 623
EagI CGGCCG 1 cut(s) 623
Eam1104I CTCTTC 2 cut(s) 258, 825
EarI CTCTTC 2 cut(s) 258, 825
EclXI CGGCCG 1 cut(s) 623
Eco130I CCWWGG 1 cut(s) 65
Eco52I CGGCCG 1 cut(s) 623
Eco57I CTGAAG 1 cut(s) 240
Eco88I CYCGRG 2 cut(s) 419, 546
EcoRII CCWGG 3 cut(s) 101, 142, 634
EcoT14I CCWWGG 1 cut(s) 65
ErhI CCWWGG 1 cut(s) 65
FaeI CATG 4 cut(s) 69, 452, 536, 830
FatI CATG 4 cut(s) 65, 448, 532, 826
Fnu4HI GCNGC 1 cut(s) 682
FokI GGATG 2 cut(s) 532, 582
Fsp4HI GCNGC 1 cut(s) 682
FspBI CTAG 2 cut(s) 44, 108
GlaI GCGC 1 cut(s) 553
GluI GCNGC 1 cut(s) 682
GsaI CCCAGC 1 cut(s) 53
HaeIII GGCC 2 cut(s) 625, 634
HapII CCGG 3 cut(s) 455, 770, 835
HhaI GCGC 1 cut(s) 554
Hin1II CATG 4 cut(s) 69, 452, 536, 830
Hin6I GCGC 1 cut(s) 552
HinP1I GCGC 1 cut(s) 552
HindIII AAGCTT 1 cut(s) 128
HinfI GANTC 6 cut(s) 241, 350, 417, 468, 493, 758
HpaII CCGG 3 cut(s) 455, 770, 835
Hpy166II GTNNAC 2 cut(s) 674, 845
Hpy188I TCNGA 5 cut(s) 73, 84, 355, 427, 757
Hpy188III TCNNGA 5 cut(s) 257, 367, 472, 709, 775
Hpy8I GTNNAC 2 cut(s) 674, 845
HpyAV CCTTC 2 cut(s) 18, 230
HpyCH4III ACNGT 3 cut(s) 377, 408, 678
HpyCH4V TGCA 8 cut(s) 155, 271, 488, 573, 582, 655, 681, 859
HpyF10VI GCNNNNNNNGC 2 cut(s) 579, 631
HpyF3I CTNAG 1 cut(s) 126
Hsp92II CATG 4 cut(s) 69, 452, 536, 830
HspAI GCGC 1 cut(s) 552
Kzo9I GATC 5 cut(s) 84, 225, 457, 589, 808
Lsp1109I GCAGC 1 cut(s) 693
LweI GCATC 5 cut(s) 64, 280, 510, 560, 781
MaeI CTAG 2 cut(s) 44, 108
MaeIII GTNAC 1 cut(s) 601
MalI GATC 5 cut(s) 86, 227, 459, 591, 810
MboI GATC 5 cut(s) 84, 225, 457, 589, 808
MboII GAAGA 5 cut(s) 245, 245, 300, 807, 812
MflI RGATCY 1 cut(s) 457
MlyI GAGTC 1 cut(s) 411
MmeI TCCRAC 1 cut(s) 117
MnlI CCTC 8 cut(s) 182, 261, 502, 550, 555, 611, 624, 728
MseI TTAA 4 cut(s) 56, 96, 177, 849
MspI CCGG 3 cut(s) 455, 770, 835
MspR9I CCNGG 4 cut(s) 103, 144, 636, 836
Mva1269I GAATGC 1 cut(s) 584
MvaI CCWGG 3 cut(s) 103, 144, 636
MwoI GCNNNNNNNGC 2 cut(s) 579, 631
NciI CCSGG 1 cut(s) 836
NcoI CCATGG 1 cut(s) 65
NdeII GATC 5 cut(s) 84, 225, 457, 589, 808
NlaIII CATG 4 cut(s) 69, 452, 536, 830
NlaIV GGNNCC 4 cut(s) 6, 141, 318, 459
NspI RCATGY 1 cut(s) 452
PaqCI CACCTGC 1 cut(s) 573
PciI ACATGT 1 cut(s) 448
PctI GAATGC 1 cut(s) 584
PfeI GAWTC 5 cut(s) 241, 350, 468, 493, 758
PflFI GACNNNGTC 1 cut(s) 618
PkrI GCNGC 1 cut(s) 683
PleI GAGTC 1 cut(s) 411
PpsI GAGTC 1 cut(s) 411
PscI ACATGT 1 cut(s) 448
PshAI GACNNNNGTC 1 cut(s) 421
Psp6I CCWGG 3 cut(s) 101, 142, 634
PspFI CCCAGC 1 cut(s) 49
PspGI CCWGG 3 cut(s) 101, 142, 634
PspN4I GGNNCC 4 cut(s) 6, 141, 318, 459
PstI CTGCAG 1 cut(s) 490
PsuI RGATCY 1 cut(s) 457
PsyI GACNNNGTC 1 cut(s) 618
RsaI GTAC 3 cut(s) 410, 453, 673
RsaNI GTAC 3 cut(s) 409, 452, 672
SaqAI TTAA 4 cut(s) 56, 96, 177, 849
SatI GCNGC 1 cut(s) 682
Sau3AI GATC 5 cut(s) 84, 225, 457, 589, 808
ScaI AGTACT 1 cut(s) 410
SchI GAGTC 1 cut(s) 411
ScrFI CCNGG 4 cut(s) 103, 144, 636, 836
SetI ASST 7 cut(s) 10, 40, 132, 193, 566, 587, 622
SfaNI GCATC 5 cut(s) 64, 280, 510, 560, 781
SfcI CTRYAG 1 cut(s) 486
SfiI GGCCNNNNNGGCC 1 cut(s) 631
SmlI CTYRAG 1 cut(s) 724
SmoI CTYRAG 1 cut(s) 724
SspMI CTAG 2 cut(s) 44, 108
StyD4I CCNGG 4 cut(s) 101, 142, 634, 834
StyI CCWWGG 1 cut(s) 65
TaaI ACNGT 3 cut(s) 377, 408, 678
TaqI TCGA 3 cut(s) 228, 336, 471
TatI WGTACW 1 cut(s) 408
TfiI GAWTC 5 cut(s) 241, 350, 468, 493, 758
Tru1I TTAA 4 cut(s) 56, 96, 177, 849
Tru9I TTAA 4 cut(s) 56, 96, 177, 849
TscAI CASTG 6 cut(s) 281, 382, 580, 649, 662, 802
TseI GCWGC 1 cut(s) 681
TspDTI ATGAA 3 cut(s) 246, 521, 752
TspGWI ACGGA 1 cut(s) 821
TspRI CASTG 6 cut(s) 281, 382, 580, 649, 662, 802
Tth111I GACNNNGTC 1 cut(s) 618
XceI RCATGY 1 cut(s) 452
XspI CTAG 2 cut(s) 44, 108
ZrmI AGTACT 1 cut(s) 410
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.