MD00G1129500.v1.1

Encoded by

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr00
Physical Location & Seq
Reverse (-)
27802468 .. 27805104
2637 bp
Loading structure...
UTR
Exon/CDS
Intron
MD00G1129500.v1.1.491

Sequence Viewer

Length: 1221 bp
ATGGCACGTTGTTCCCAAGGTTGGGTATTTTTGTTAGCCGTGCTAGTATTGGCATTGAGCACTCCATGTTCACAAGCATATCTGAAACACAAGAAATTTAAGACCAAGACTGACGTTTACCTCTCCCCTAAGTTTGTATTGGAACCAGGAGTAAGTTCCAACAAATACTTCTACAACATTCAATTCCCAAAAGGTCACATTGGCCTAAAGAGTTTCAATGCTGAAGTAGTTGATGCAGAAGGGAGATCCACTCCTCTAAATGAAACCTACCTCCATCACTGGGTTGTATTAAGATATTACGCTCGCAAAAGTTACGTGGAGCCAAAGCAGCAGTCTCCCTATCAGCTCTCGGAATCAGATGTTATTTGGGTGGAGAACAGTGGCGCGTGCCAGCCTGGTTCTCTTGGACAATATTACGGGCTAGGGTCCGAAACACGGAAGACAGCCACACATGTTCCAGGCCGTTATGCAATTGAAGTTGGGGATGGTAAAGGACTTCCTGATGGGTTTGAAGAGAGATGGATGCTCAACGTGCATGCAATTGATACAAGAGGAGTGGAAGATAACTTGGGTTGCACGGAGTGCAGGTGTGATTTGTATAACGTGTCTAGGGATCCAAGTGGCCAACCTCTGCCGGCTGGGTACACCGGGGGTTTGTTGTGTTGCACTGATGGTGCAAAGTGCAGACTGAAACGAGGGTTTGATGGTGAAAAGAAAAACCACTACTTGAGATATACTGTGAAGTGGGTTGACTGGTCTGAGTTTCTTCTGCCTGCCAAGATTTATATCTTTGATGCCACTGATATCATGAATTCTTCGGCACCTGCTGCAGCTAAACACAATTGCCAGGTCGAATATGATGTTGCAAAGTCTTGCAATGCAACTGGTGTTTGCTTAGACAACAAATGGGCAAAGATTTCAATTCCAACTGGTGGTTATGTCATCTATGGTGTAGCTCATCAGCACAAAGGGGGGCTTGGTTCAACACTCTATGGACAGGACGGAAGGGTTTTGTGTTCGTCCACACCAATTTATGGAAATGGAACGAAAGCAGGAAATGAGGCCGGTTATATTGTAGGAATGACGACTTGTTACCCTTGGCCAGGCTCAGTCAAGATAAAAAATGCGGAGCCTCTGACTCTAGTTTCTACTTACAACAGCACTCAGATGCACAGCGGAGTCATGGGTCTCTTCTACATTTTGGTTGCAGAAACACTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

407

Amino Acids

44.76

Weight (kDa)

8.4

Isoelectric Point (pI)

41.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SURNod19 PF07712 34 - 404 3.3e-168 Stress up-regulated Nod 19
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 576, 832
Acc36I ACCTGC 2 cut(s) 576, 832
AccB1I GGYRCC 1 cut(s) 820
AccB7I CCANNNNNTGG 2 cut(s) 932, 1034
AccII CGCG 1 cut(s) 386
AciI CCGC 2 cut(s) 1127, 1176
AclWI GGATC 3 cut(s) 240, 608, 621
AcoI YGGCCR 2 cut(s) 622, 1100
AcsI RAATTY 2 cut(s) 95, 811
AcuI CTGAAG 1 cut(s) 243
AdeI CACNNNGTG 1 cut(s) 582
AfaI GTAC 1 cut(s) 644
AfiI CCNNNNNNNGG 7 cut(s) 21, 22, 280, 435, 932, 1034, 1103
AflIII ACRYGT 2 cut(s) 451, 603
AgsI TTSAA 6 cut(s) 182, 217, 476, 512, 921, 984
AjnI CCWGG 5 cut(s) 145, 394, 457, 846, 1102
AjuI GAANNNNNNNTTGG 2 cut(s) 152, 184
AluBI AGCT 3 cut(s) 346, 833, 956
AluI AGCT 3 cut(s) 346, 833, 956
Alw21I GWGCWC 1 cut(s) 62
Alw26I GTCTC 2 cut(s) 339, 1193
AlwI GGATC 3 cut(s) 240, 608, 621
AoxI GGCC 5 cut(s) 202, 460, 622, 1062, 1100
ApeKI GCWGC 3 cut(s) 328, 827, 830
ApoI RAATTY 2 cut(s) 95, 811
ArsI GACNNNNNNTTYG 2 cut(s) 317, 349
AspLEI GCGC 1 cut(s) 386
AspS9I GGNCC 1 cut(s) 426
AsuC2I CCSGG 1 cut(s) 649
AsuHPI GGTGA 1 cut(s) 719
AvaII GGWCC 1 cut(s) 426
BalI TGGCCA 2 cut(s) 624, 1102
BamHI GGATCC 1 cut(s) 613
BanI GGYRCC 1 cut(s) 820
BbsI GAAGAC 1 cut(s) 446
Bbv12I GWGCWC 1 cut(s) 62
BbvI GCAGC 3 cut(s) 340, 814, 842
BccI CCATC 6 cut(s) 282, 479, 497, 513, 665, 698
BceAI ACGGC 2 cut(s) 23, 447
BciT130I CCWGG 5 cut(s) 147, 396, 459, 848, 1104
BcnI CCSGG 1 cut(s) 649
BcoDI GTCTC 2 cut(s) 339, 1193
BfaI CTAG 4 cut(s) 44, 422, 609, 1142
BfmI CTRYAG 1 cut(s) 828
BfuAI ACCTGC 2 cut(s) 576, 832
BisI GCNGC 3 cut(s) 329, 828, 831
BlsI GCNGC 3 cut(s) 330, 829, 832
Bme1390I CCNGG 6 cut(s) 147, 396, 459, 649, 848, 1104
Bme18I GGWCC 1 cut(s) 426
BmgT120I GGNCC 1 cut(s) 426
BmiI GGNNCC 6 cut(s) 144, 321, 427, 615, 822, 1131
BmrFI CCNGG 6 cut(s) 147, 396, 459, 649, 848, 1104
BmrI ACTGGG 1 cut(s) 289
BmsI GCATC 4 cut(s) 223, 513, 784, 1158
BmuI ACTGGG 1 cut(s) 289
BpiI GAAGAC 1 cut(s) 446
BplI GAGNNNNNCTC 2 cut(s) 235, 267
BpuEI CTTGAG 1 cut(s) 748
BpuMI CCSGG 1 cut(s) 649
BsaAI YACGTR 1 cut(s) 316
BsaBI GATNNNNATC 1 cut(s) 785
BsaI GGTCTC 1 cut(s) 1193
BsaJI CCNNGG 3 cut(s) 16, 648, 1097
BsaXI ACNNNNNCTCC 2 cut(s) 572, 602
Bsc4I CCNNNNNNNGG 7 cut(s) 21, 22, 280, 435, 932, 1034, 1103
Bse118I RCCGGY 2 cut(s) 634, 1064
Bse1I ACTGG 4 cut(s) 284, 758, 889, 934
Bse3DI GCAATG 1 cut(s) 883
Bse8I GATNNNNATC 1 cut(s) 785
BseBI CCWGG 5 cut(s) 147, 396, 459, 848, 1104
BseDI CCNNGG 3 cut(s) 16, 648, 1097
BseGI GGATG 2 cut(s) 490, 528
BseJI GATNNNNATC 1 cut(s) 785
BseLI CCNNNNNNNGG 7 cut(s) 21, 22, 280, 435, 932, 1034, 1103
BseMI GCAATG 1 cut(s) 883
BseMII CTCAG 3 cut(s) 750, 1122, 1178
BseNI ACTGG 4 cut(s) 284, 758, 889, 934
BseRI GAGGAG 2 cut(s) 243, 567
BseXI GCAGC 3 cut(s) 340, 814, 842
BseYI CCCAGC 1 cut(s) 638
BsgI GTGCAG 2 cut(s) 604, 703
Bsh1236I CGCG 1 cut(s) 386
BshFI GGCC 5 cut(s) 204, 462, 624, 1064, 1102
BshNI GGYRCC 1 cut(s) 820
BsiHKAI GWGCWC 1 cut(s) 62
BsiSI CCGG 3 cut(s) 635, 648, 1065
BslI CCNNNNNNNGG 7 cut(s) 21, 22, 280, 435, 932, 1034, 1103
BsmAI GTCTC 2 cut(s) 339, 1193
BsnI GGCC 5 cut(s) 204, 462, 624, 1064, 1102
Bso31I GGTCTC 1 cut(s) 1193
Bsp1286I GDGCHC 1 cut(s) 62
Bsp143I GATC 2 cut(s) 245, 613
BspACI CCGC 2 cut(s) 1127, 1176
BspANI GGCC 5 cut(s) 204, 462, 624, 1064, 1102
BspCNI CTCAG 3 cut(s) 751, 1121, 1177
BspFNI CGCG 1 cut(s) 386
BspHI TCATGA 1 cut(s) 807
BspLI GGNNCC 6 cut(s) 144, 321, 427, 615, 822, 1131
BspMAI CTGCAG 1 cut(s) 832
BspMI ACCTGC 2 cut(s) 576, 832
BspPI GGATC 3 cut(s) 240, 608, 621
BspT107I GGYRCC 1 cut(s) 820
BspTNI GGTCTC 1 cut(s) 1193
BsrDI GCAATG 1 cut(s) 883
BsrFI RCCGGY 2 cut(s) 634, 1064
BsrI ACTGG 4 cut(s) 284, 758, 889, 934
BssAI RCCGGY 2 cut(s) 634, 1064
BssECI CCNNGG 3 cut(s) 16, 648, 1097
BssMI GATC 2 cut(s) 245, 613
BssT1I CCWWGG 2 cut(s) 16, 1097
Bst2UI CCWGG 5 cut(s) 147, 396, 459, 848, 1104
Bst4CI ACNGT 2 cut(s) 380, 739
Bst6I CTCTTC 2 cut(s) 507, 1196
BstAPI GCANNNNNTGC 2 cut(s) 582, 827
BstBAI YACGTR 1 cut(s) 316
BstC8I GCNNGC 6 cut(s) 304, 388, 392, 537, 636, 774
BstDEI CTNAG 5 cut(s) 129, 759, 895, 1108, 1164
BstENI CCTNNNNNAGG 1 cut(s) 1101
BstF5I GGATG 2 cut(s) 490, 528
BstFNI CGCG 1 cut(s) 386
BstHHI GCGC 1 cut(s) 386
BstKTI GATC 2 cut(s) 248, 616
BstMAI GTCTC 2 cut(s) 339, 1193
BstMBI GATC 2 cut(s) 245, 613
BstMWI GCNNNNNNNGC 4 cut(s) 328, 532, 582, 827
BstNI CCWGG 5 cut(s) 147, 396, 459, 848, 1104
BstNSI RCATGY 2 cut(s) 455, 539
BstSCI CCNGG 6 cut(s) 145, 394, 457, 647, 846, 1102
BstSFI CTRYAG 1 cut(s) 828
BstUI CGCG 1 cut(s) 386
BstV1I GCAGC 3 cut(s) 340, 814, 842
BstV2I GAAGAC 1 cut(s) 446
BstX2I RGATCY 2 cut(s) 245, 613
BstYI RGATCY 2 cut(s) 245, 613
BsuRI GGCC 5 cut(s) 204, 462, 624, 1064, 1102
BtsCI GGATG 2 cut(s) 490, 528
BtsIMutI CAGTG 4 cut(s) 277, 385, 666, 798
BveI ACCTGC 2 cut(s) 576, 832
Cac8I GCNNGC 6 cut(s) 304, 388, 392, 537, 636, 774
CciI TCATGA 1 cut(s) 807
CfoI GCGC 1 cut(s) 386
Cfr10I RCCGGY 2 cut(s) 634, 1064
Cfr13I GGNCC 1 cut(s) 426
Csp6I GTAC 1 cut(s) 643
CspCI CAANNNNNGTGG 2 cut(s) 537, 572
CviAII CATG 5 cut(s) 66, 452, 536, 808, 1183
CviQI GTAC 1 cut(s) 643
DdeI CTNAG 5 cut(s) 129, 759, 895, 1108, 1164
DpnI GATC 2 cut(s) 247, 615
DpnII GATC 2 cut(s) 245, 613
DraIII CACNNNGTG 1 cut(s) 582
EaeI YGGCCR 2 cut(s) 622, 1100
Eam1104I CTCTTC 2 cut(s) 507, 1196
EarI CTCTTC 2 cut(s) 507, 1196
Eco130I CCWWGG 2 cut(s) 16, 1097
Eco31I GGTCTC 1 cut(s) 1193
Eco32I GATATC 1 cut(s) 805
Eco47I GGWCC 1 cut(s) 426
Eco57I CTGAAG 1 cut(s) 243
EcoNI CCTNNNNNAGG 1 cut(s) 1101
EcoRI GAATTC 1 cut(s) 811
EcoRII CCWGG 5 cut(s) 145, 394, 457, 846, 1102
EcoRV GATATC 1 cut(s) 805
EcoT14I CCWWGG 2 cut(s) 16, 1097
ErhI CCWWGG 2 cut(s) 16, 1097
FaeI CATG 5 cut(s) 69, 455, 539, 811, 1186
FalI AAGNNNNNCTT 2 cut(s) 960, 992
FatI CATG 5 cut(s) 65, 451, 535, 807, 1182
Fnu4HI GCNGC 3 cut(s) 329, 828, 831
FokI GGATG 2 cut(s) 497, 535
Fsp4HI GCNGC 3 cut(s) 329, 828, 831
FspBI CTAG 4 cut(s) 44, 422, 609, 1142
GlaI GCGC 1 cut(s) 385
GluI GCNGC 3 cut(s) 329, 828, 831
GsaI CCCAGC 1 cut(s) 642
HaeIII GGCC 5 cut(s) 204, 462, 624, 1064, 1102
HapII CCGG 3 cut(s) 635, 648, 1065
HhaI GCGC 1 cut(s) 386
Hin1II CATG 5 cut(s) 69, 455, 539, 811, 1186
Hin6I GCGC 1 cut(s) 384
HinP1I GCGC 1 cut(s) 384
HincII GTYRAC 1 cut(s) 751
HindII GTYRAC 1 cut(s) 751
HinfI GANTC 3 cut(s) 353, 1138, 1179
HpaII CCGG 3 cut(s) 635, 648, 1065
HphI GGTGA 1 cut(s) 719
Hpy166II GTNNAC 5 cut(s) 71, 118, 645, 751, 1023
Hpy188I TCNGA 7 cut(s) 84, 352, 358, 430, 760, 1137, 1167
Hpy188III TCNNGA 3 cut(s) 500, 808, 1114
Hpy8I GTNNAC 5 cut(s) 71, 118, 645, 751, 1023
HpyAV CCTTC 2 cut(s) 233, 999
HpyCH4III ACNGT 2 cut(s) 380, 739
HpyCH4IV ACGT 5 cut(s) 7, 114, 315, 531, 603
HpyF10VI GCNNNNNNNGC 4 cut(s) 328, 532, 582, 827
HpyF3I CTNAG 5 cut(s) 129, 759, 895, 1108, 1164
HpySE526I ACGT 5 cut(s) 7, 114, 315, 531, 603
Hsp92II CATG 5 cut(s) 69, 455, 539, 811, 1186
HspAI GCGC 1 cut(s) 384
KroI GCCGGC 1 cut(s) 634
KroNI GCCGGC 1 cut(s) 636
Kzo9I GATC 2 cut(s) 245, 613
LmnI GCTCC 2 cut(s) 319, 1129
Lsp1109I GCAGC 3 cut(s) 340, 814, 842
LweI GCATC 4 cut(s) 223, 513, 784, 1158
MaeI CTAG 4 cut(s) 44, 422, 609, 1142
MaeII ACGT 5 cut(s) 7, 114, 315, 531, 603
MaeIII GTNAC 3 cut(s) 194, 311, 1091
MalI GATC 2 cut(s) 247, 615
MboI GATC 2 cut(s) 245, 613
MboII GAAGA 6 cut(s) 451, 524, 572, 758, 807, 1183
MfeI CAATTG 3 cut(s) 471, 540, 841
MflI RGATCY 2 cut(s) 245, 613
MhlI GDGCHC 1 cut(s) 62
MlsI TGGCCA 2 cut(s) 624, 1102
MluCI AATT 8 cut(s) 95, 182, 471, 540, 811, 841, 921, 1029
MluNI TGGCCA 2 cut(s) 624, 1102
MlyI GAGTC 2 cut(s) 1132, 1188
MmeI TCCRAC 2 cut(s) 183, 950
MnlI CCTC 8 cut(s) 131, 264, 281, 545, 639, 689, 1054, 1143
Mox20I TGGCCA 2 cut(s) 624, 1102
MroNI GCCGGC 1 cut(s) 634
MscI TGGCCA 2 cut(s) 624, 1102
MseI TTAA 2 cut(s) 99, 290
MslI CAYNNNNRTG 1 cut(s) 1166
Msp20I TGGCCA 2 cut(s) 624, 1102
MspA1I CMGCKG 1 cut(s) 1176
MspI CCGG 3 cut(s) 635, 648, 1065
MspR9I CCNGG 6 cut(s) 147, 396, 459, 649, 848, 1104
MunI CAATTG 3 cut(s) 471, 540, 841
MvaI CCWGG 5 cut(s) 147, 396, 459, 848, 1104
MvnI CGCG 1 cut(s) 386
MwoI GCNNNNNNNGC 4 cut(s) 328, 532, 582, 827
NaeI GCCGGC 1 cut(s) 636
NciI CCSGG 1 cut(s) 649
NdeII GATC 2 cut(s) 245, 613
NgoMIV GCCGGC 1 cut(s) 634
NlaIII CATG 5 cut(s) 69, 455, 539, 811, 1186
NlaIV GGNNCC 6 cut(s) 144, 321, 427, 615, 822, 1131
NmuCI GTSAC 1 cut(s) 194
NspI RCATGY 2 cut(s) 455, 539
PaeI GCATGC 1 cut(s) 539
PagI TCATGA 1 cut(s) 807
PaqCI CACCTGC 2 cut(s) 576, 832
PciI ACATGT 1 cut(s) 451
PdiI GCCGGC 1 cut(s) 636
PfeI GAWTC 1 cut(s) 353
PflMI CCANNNNNTGG 2 cut(s) 932, 1034
PkrI GCNGC 3 cut(s) 330, 829, 832
PleI GAGTC 2 cut(s) 1132, 1187
PpsI GAGTC 2 cut(s) 1132, 1187
Ppu21I YACGTR 1 cut(s) 316
PscI ACATGT 1 cut(s) 451
Psp6I CCWGG 5 cut(s) 145, 394, 457, 846, 1102
PspFI CCCAGC 1 cut(s) 638
PspGI CCWGG 5 cut(s) 145, 394, 457, 846, 1102
PspN4I GGNNCC 6 cut(s) 144, 321, 427, 615, 822, 1131
PspPI GGNCC 1 cut(s) 426
PstI CTGCAG 1 cut(s) 832
PsuI RGATCY 2 cut(s) 245, 613
RsaI GTAC 1 cut(s) 644
RsaNI GTAC 1 cut(s) 643
RseI CAYNNNNRTG 1 cut(s) 1166
SaqAI TTAA 2 cut(s) 99, 290
SatI GCNGC 3 cut(s) 329, 828, 831
Sau3AI GATC 2 cut(s) 245, 613
Sau96I GGNCC 1 cut(s) 426
SchI GAGTC 2 cut(s) 1132, 1188
ScrFI CCNGG 6 cut(s) 147, 396, 459, 649, 848, 1104
SduI GDGCHC 1 cut(s) 62
SfaNI GCATC 4 cut(s) 223, 513, 784, 1158
SfcI CTRYAG 1 cut(s) 828
SinI GGWCC 1 cut(s) 426
SmiMI CAYNNNNRTG 1 cut(s) 1166
SmlI CTYRAG 1 cut(s) 727
SmoI CTYRAG 1 cut(s) 727
SphI GCATGC 1 cut(s) 539
Sse9I AATT 8 cut(s) 95, 182, 471, 540, 811, 841, 921, 1029
SsiI CCGC 2 cut(s) 1127, 1176
SspI AATATT 1 cut(s) 413
SspMI CTAG 4 cut(s) 44, 422, 609, 1142
StyD4I CCNGG 6 cut(s) 145, 394, 457, 647, 846, 1102
StyI CCWWGG 2 cut(s) 16, 1097
TaaI ACNGT 2 cut(s) 380, 739
TaiI ACGT 5 cut(s) 10, 117, 318, 534, 606
TaqI TCGA 1 cut(s) 852
TasI AATT 8 cut(s) 95, 182, 471, 540, 811, 841, 921, 1029
TfiI GAWTC 1 cut(s) 353
Tru1I TTAA 2 cut(s) 99, 290
Tru9I TTAA 2 cut(s) 99, 290
TscAI CASTG 4 cut(s) 284, 385, 673, 805
TseFI GTSAC 1 cut(s) 194
TseI GCWGC 3 cut(s) 328, 827, 830
Tsp45I GTSAC 1 cut(s) 194
TspDTI ATGAA 2 cut(s) 276, 824
TspGWI ACGGA 3 cut(s) 451, 593, 1017
TspRI CASTG 4 cut(s) 284, 385, 673, 805
Van91I CCANNNNNTGG 2 cut(s) 932, 1034
VpaK11BI GGWCC 1 cut(s) 426
XagI CCTNNNNNAGG 1 cut(s) 1101
XapI RAATTY 2 cut(s) 95, 811
XceI RCATGY 2 cut(s) 455, 539
XspI CTAG 4 cut(s) 44, 422, 609, 1142
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.