FvH4_5g09790

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0001567
Physical Location & Seq
Forward (+)
5626082 .. 5629037
2956 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g09790.t1

Sequence Viewer

Length: 1263 bp
ATGGGACCTTCTTGTCAAAGTTTGGTGCTTTTGTTAGCTGTGCTAGTACTGGGATTAAGCTTACCATGTTCAGATGCTATTCGGATCAATAAGGTTAAGACCAGGACTAACGTTTATCTCTCCCCTAAGCTTGTGTTGGAACCAGGGTCAGTTGCAGACAAGTATTTCTACAACATTAACTTCCCAAAAGGTCATATTGCTATAAAGTATTTCAATGCTGAGGTGATCGATGAAGAAGGGAATCCTATTCCTCTTCACGAGACTTATCTGCATCATTGGGTTCTTGCAAGATATTATGCTCGGACAAGTTATCTGGAACCAGAGCAGATTGGTTTCGATCATATTGAAAATTCAGATTTTCAGTTAGTGAGAAACAGTGGTTTGTGCCAGAATAATGTTCTTGGACAGTACTATGGACTCGGGTCAGAAACACGAAAGACAGACACACATGTACCTGATCCTTTTGGAATAGAGATTGGCAACCCTGCAGAGATTCCGGCTGGGTATGAGGAGAGATGGATGCTCAATGTTCATGCTATTGATACTCGGGGAGCAGTGGATAGGTTGGGATGCACTGAATGCAGGTGTGATCTGTATAATGTGACAAAAGATGGACGAGGCCAGCCGTTGAGGCCAGGGTACACAGGGGGTTTGCACTGCTGTTATGATGGTACACAGTGCAGTGTAAAACAAGGCTATAATGGTGTCAAGAGAAGCCTCTACTTGAGATACACTGTGAAGTGGGTTGATTGGTCTGATTCTATCGTGCCTGTCAAGATTTATATCTTTGATGCCACCGATAGAACGGATCAATCAGCAGGATCCTCTCTTAAACATGATTGCCGGGTCGAATATAATGTTGAGCCTTGCAGTACTGTCGATGCGGTAAATGATCAGTGTTTTCACAATCAACAGGCAGTGATTACTATGCCAACTGGTGGTTATATTGTCTATGGTGTAGCCCATCAGCACACTGGGGGGCTTGGCGCAACTCTATATAGAGAGGATGGACGGGGTATATGTTCATCAATACCAATTTATGGACAAAGCGAGGAAGCTGGAGACGAGGCTGGTTACATTGTAGGAATGTCAACTTGCTATCCACGTCCGGGATCTGTCAAAATAAACGATGGGGAGACTCTGGTTGTGGGATCTAATTACAGCAGCTCACAGCCACACACAGGAGTCATGGGCCTCTTTTACATCTTGGTTGCAGAGAACCTGCCAAAGTCCTCCTTGCTTAGCTTGGACTTTTCACTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SURNod19

Protein Analysis

421

Amino Acids

46.41

Weight (kDa)

5.53

Isoelectric Point (pI)

37.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SURNod19 PF07712 33 - 406 4.7e-186 Stress up-regulated Nod 19
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 573
AasI GACNNNNNNGTC 1 cut(s) 12
Acc36I ACCTGC 2 cut(s) 573, 1230
AccB7I CCANNNNNTGG 2 cut(s) 938, 1040
AciI CCGC 1 cut(s) 884
AclI AACGTT 1 cut(s) 111
AclWI GGATC 7 cut(s) 92, 452, 816, 816, 829, 1120, 1159
AcsI RAATTY 1 cut(s) 349
AfaI GTAC 6 cut(s) 48, 410, 453, 641, 673, 874
AfiI CCNNNNNNNGG 4 cut(s) 938, 1040, 1109, 1181
AflIII ACRYGT 1 cut(s) 448
AgsI TTSAA 2 cut(s) 214, 347
AjiI CACGTC 1 cut(s) 1106
AjnI CCWGG 3 cut(s) 101, 142, 634
AluBI AGCT 6 cut(s) 38, 60, 130, 1058, 1167, 1245
AluI AGCT 6 cut(s) 38, 60, 130, 1058, 1167, 1245
Alw26I GTCTC 3 cut(s) 254, 1056, 1130
AlwI GGATC 7 cut(s) 92, 452, 816, 816, 829, 1120, 1159
Ama87I CYCGRG 2 cut(s) 419, 546
AoxI GGCC 3 cut(s) 619, 632, 1192
ApeKI GCWGC 1 cut(s) 1164
ApoI RAATTY 1 cut(s) 349
AspLEI GCGC 1 cut(s) 989
AspS9I GGNCC 2 cut(s) 5, 1192
AsuC2I CCSGG 2 cut(s) 845, 1110
AsuHPI GGTGA 1 cut(s) 235
AvaI CYCGRG 2 cut(s) 419, 546
AvaII GGWCC 1 cut(s) 5
BaeI ACNNNNGTAYC 2 cut(s) 435, 468
BamHI GGATCC 1 cut(s) 821
BauI CACGAG 1 cut(s) 257
BbvCI CCTCAGC 1 cut(s) 219
BbvI GCAGC 1 cut(s) 1176
BccI CCATC 6 cut(s) 510, 605, 662, 972, 1001, 1124
BceAI ACGGC 1 cut(s) 610
BcgI CGANNNNNNTGC 2 cut(s) 859, 893
BciT130I CCWGG 3 cut(s) 103, 144, 636
BclI TGATCA 1 cut(s) 892
BcnI CCSGG 2 cut(s) 845, 1110
BcoDI GTCTC 3 cut(s) 254, 1056, 1130
BfaI CTAG 1 cut(s) 44
BfmI CTRYAG 1 cut(s) 486
BfuAI ACCTGC 2 cut(s) 573, 1230
BglI GCCNNNNNGGC 1 cut(s) 631
BisI GCNGC 1 cut(s) 1165
BlpI GCTNAGC 1 cut(s) 1241
BlsI GCNGC 1 cut(s) 1166
BmcAI AGTACT 3 cut(s) 48, 410, 874
Bme1390I CCNGG 5 cut(s) 103, 144, 636, 845, 1110
Bme18I GGWCC 1 cut(s) 5
BmeT110I CYCGRG 2 cut(s) 419, 546
BmgBI CACGTC 1 cut(s) 1106
BmgT120I GGNCC 2 cut(s) 5, 1192
BmiI GGNNCC 4 cut(s) 6, 141, 318, 823
BmrFI CCNGG 5 cut(s) 103, 144, 636, 845, 1110
BmrI ACTGGG 2 cut(s) 59, 984
BmsI GCATC 6 cut(s) 64, 280, 510, 560, 781, 871
BmuI ACTGGG 2 cut(s) 59, 984
BoxI GACNNNNGTC 1 cut(s) 421
BpmI CTGGAG 1 cut(s) 1080
Bpu10I CCTNAGC 2 cut(s) 126, 219
Bpu1102I GCTNAGC 1 cut(s) 1241
BpuEI CTTGAG 1 cut(s) 745
BpuMI CCSGG 2 cut(s) 845, 1110
Bsa29I ATCGAT 1 cut(s) 228
BsaBI GATNNNNATC 1 cut(s) 782
BsaJI CCNNGG 2 cut(s) 143, 635
Bsc4I CCNNNNNNNGG 4 cut(s) 938, 1040, 1109, 1181
Bse1I ACTGG 3 cut(s) 54, 940, 979
Bse8I GATNNNNATC 1 cut(s) 782
BseBI CCWGG 3 cut(s) 103, 144, 636
BseCI ATCGAT 1 cut(s) 228
BseDI CCNNGG 2 cut(s) 143, 635
BseGI GGATG 3 cut(s) 525, 575, 1012
BseJI GATNNNNATC 1 cut(s) 782
BseLI CCNNNNNNNGG 4 cut(s) 938, 1040, 1109, 1181
BseMII CTCAG 1 cut(s) 210
BseNI ACTGG 3 cut(s) 54, 940, 979
BseRI GAGGAG 1 cut(s) 524
BseXI GCAGC 1 cut(s) 1176
BseYI CCCAGC 1 cut(s) 500
BsgI GTGCAG 1 cut(s) 700
BshFI GGCC 3 cut(s) 621, 634, 1194
BshVI ATCGAT 1 cut(s) 228
BsiHKCI CYCGRG 2 cut(s) 419, 546
BsiSI CCGG 3 cut(s) 497, 844, 1109
BslFI GGGAC 1 cut(s) 18
BslI CCNNNNNNNGG 4 cut(s) 938, 1040, 1109, 1181
BsmAI GTCTC 3 cut(s) 254, 1056, 1130
BsmBI CGTCTC 1 cut(s) 1056
BsmFI GGGAC 1 cut(s) 18
BsmI GAATGC 1 cut(s) 584
BsnI GGCC 3 cut(s) 621, 634, 1194
BsoBI CYCGRG 2 cut(s) 419, 546
Bsp1720I GCTNAGC 1 cut(s) 1241
BspACI CCGC 1 cut(s) 884
BspANI GGCC 3 cut(s) 621, 634, 1194
BspCNI CTCAG 1 cut(s) 211
BspDI ATCGAT 1 cut(s) 228
BspLI GGNNCC 4 cut(s) 6, 141, 318, 823
BspMAI CTGCAG 1 cut(s) 490
BspMI ACCTGC 2 cut(s) 573, 1230
BspPI GGATC 7 cut(s) 92, 452, 816, 816, 829, 1120, 1159
BsrI ACTGG 3 cut(s) 54, 940, 979
BssECI CCNNGG 2 cut(s) 143, 635
BssSI CACGAG 1 cut(s) 257
Bst2BI CACGAG 1 cut(s) 257
Bst2UI CCWGG 3 cut(s) 103, 144, 636
Bst4CI ACNGT 5 cut(s) 377, 408, 678, 736, 877
Bst6I CTCTTC 1 cut(s) 258
BstAPI GCANNNNNTGC 1 cut(s) 579
BstC8I GCNNGC 1 cut(s) 623
BstDEI CTNAG 3 cut(s) 126, 219, 1241
BstF5I GGATG 3 cut(s) 525, 575, 1012
BstHHI GCGC 1 cut(s) 989
BstMAI GTCTC 3 cut(s) 254, 1056, 1130
BstMWI GCNNNNNNNGC 2 cut(s) 579, 631
BstNI CCWGG 3 cut(s) 103, 144, 636
BstNSI RCATGY 1 cut(s) 452
BstPAI GACNNNNGTC 1 cut(s) 421
BstSCI CCNGG 5 cut(s) 101, 142, 634, 843, 1108
BstSFI CTRYAG 1 cut(s) 486
BstV1I GCAGC 1 cut(s) 1176
BstX2I RGATCY 3 cut(s) 821, 1112, 1151
BstYI RGATCY 3 cut(s) 821, 1112, 1151
Bsu15I ATCGAT 1 cut(s) 228
BsuRI GGCC 3 cut(s) 621, 634, 1194
BsuTUI ATCGAT 1 cut(s) 228
BtrI CACGTC 1 cut(s) 1106
BtsCI GGATG 3 cut(s) 525, 575, 1012
BtsI GCAGTG 4 cut(s) 561, 655, 688, 924
BveI ACCTGC 2 cut(s) 573, 1230
Cac8I GCNNGC 1 cut(s) 623
CfoI GCGC 1 cut(s) 989
Cfr13I GGNCC 2 cut(s) 5, 1192
ClaI ATCGAT 1 cut(s) 228
Csp6I GTAC 6 cut(s) 47, 409, 452, 640, 672, 873
CviAII CATG 5 cut(s) 66, 449, 533, 836, 1189
CviQI GTAC 6 cut(s) 47, 409, 452, 640, 672, 873
DdeI CTNAG 3 cut(s) 126, 219, 1241
DrdI GACNNNNNNGTC 1 cut(s) 12
DseDI GACNNNNNNGTC 1 cut(s) 12
Eam1104I CTCTTC 1 cut(s) 258
EarI CTCTTC 1 cut(s) 258
Eco47I GGWCC 1 cut(s) 5
Eco88I CYCGRG 2 cut(s) 419, 546
EcoO109I RGGNCCY 1 cut(s) 5
EcoRII CCWGG 3 cut(s) 101, 142, 634
Esp3I CGTCTC 1 cut(s) 1056
FaeI CATG 5 cut(s) 69, 452, 536, 839, 1192
FalI AAGNNNNNCTT 2 cut(s) 1220, 1252
FaqI GGGAC 1 cut(s) 18
FatI CATG 5 cut(s) 65, 448, 532, 835, 1188
FbaI TGATCA 1 cut(s) 892
Fnu4HI GCNGC 1 cut(s) 1165
FokI GGATG 3 cut(s) 532, 582, 1019
Fsp4HI GCNGC 1 cut(s) 1165
FspBI CTAG 1 cut(s) 44
GlaI GCGC 1 cut(s) 988
GluI GCNGC 1 cut(s) 1165
GsaI CCCAGC 1 cut(s) 504
GsuI CTGGAG 1 cut(s) 1080
HaeIII GGCC 3 cut(s) 621, 634, 1194
HapII CCGG 3 cut(s) 497, 844, 1109
HhaI GCGC 1 cut(s) 989
Hin1II CATG 5 cut(s) 69, 452, 536, 839, 1192
Hin6I GCGC 1 cut(s) 987
HinP1I GCGC 1 cut(s) 987
HincII GTYRAC 1 cut(s) 1092
HindII GTYRAC 1 cut(s) 1092
HindIII AAGCTT 2 cut(s) 58, 128
HinfI GANTC 6 cut(s) 241, 417, 493, 758, 1138, 1185
HpaII CCGG 3 cut(s) 497, 844, 1109
HphI GGTGA 1 cut(s) 235
Hpy166II GTNNAC 3 cut(s) 642, 674, 1092
Hpy188I TCNGA 6 cut(s) 73, 84, 303, 355, 427, 757
Hpy188III TCNNGA 4 cut(s) 257, 314, 709, 775
Hpy8I GTNNAC 3 cut(s) 642, 674, 1092
HpyAV CCTTC 2 cut(s) 18, 230
HpyCH4III ACNGT 5 cut(s) 377, 408, 678, 736, 877
HpyCH4IV ACGT 2 cut(s) 111, 1105
HpyF10VI GCNNNNNNNGC 2 cut(s) 579, 631
HpyF3I CTNAG 3 cut(s) 126, 219, 1241
HpySE526I ACGT 2 cut(s) 111, 1105
Hsp92II CATG 5 cut(s) 69, 452, 536, 839, 1192
HspAI GCGC 1 cut(s) 987
Ksp22I TGATCA 1 cut(s) 892
LmnI GCTCC 1 cut(s) 551
Lsp1109I GCAGC 1 cut(s) 1176
LweI GCATC 6 cut(s) 64, 280, 510, 560, 781, 871
MaeI CTAG 1 cut(s) 44
MaeII ACGT 2 cut(s) 111, 1105
MaeIII GTNAC 2 cut(s) 601, 1073
MboII GAAGA 2 cut(s) 245, 245
MflI RGATCY 3 cut(s) 821, 1112, 1151
MluCI AATT 3 cut(s) 349, 1035, 1156
MlyI GAGTC 3 cut(s) 411, 1132, 1194
MmeI TCCRAC 1 cut(s) 117
MseI TTAA 4 cut(s) 56, 96, 177, 831
MspI CCGG 3 cut(s) 497, 844, 1109
MspR9I CCNGG 5 cut(s) 103, 144, 636, 845, 1110
Mva1269I GAATGC 1 cut(s) 584
MvaI CCWGG 3 cut(s) 103, 144, 636
MwoI GCNNNNNNNGC 2 cut(s) 579, 631
NciI CCSGG 2 cut(s) 845, 1110
NlaIII CATG 5 cut(s) 69, 452, 536, 839, 1192
NlaIV GGNNCC 4 cut(s) 6, 141, 318, 823
NmuCI GTSAC 1 cut(s) 601
NspI RCATGY 1 cut(s) 452
PaqCI CACCTGC 1 cut(s) 573
PciI ACATGT 1 cut(s) 448
PctI GAATGC 1 cut(s) 584
PfeI GAWTC 3 cut(s) 241, 493, 758
PflMI CCANNNNNTGG 2 cut(s) 938, 1040
PfoI TCCNGGA 1 cut(s) 1108
PkrI GCNGC 1 cut(s) 1166
PleI GAGTC 3 cut(s) 411, 1132, 1193
PpsI GAGTC 3 cut(s) 411, 1132, 1193
PpuMI RGGWCCY 1 cut(s) 5
PscI ACATGT 1 cut(s) 448
PshAI GACNNNNGTC 1 cut(s) 421
Psp1406I AACGTT 1 cut(s) 111
Psp5II RGGWCCY 1 cut(s) 5
Psp6I CCWGG 3 cut(s) 101, 142, 634
PspFI CCCAGC 1 cut(s) 500
PspGI CCWGG 3 cut(s) 101, 142, 634
PspN4I GGNNCC 4 cut(s) 6, 141, 318, 823
PspPI GGNCC 2 cut(s) 5, 1192
PspPPI RGGWCCY 1 cut(s) 5
PstI CTGCAG 1 cut(s) 490
PsuI RGATCY 3 cut(s) 821, 1112, 1151
RsaI GTAC 6 cut(s) 48, 410, 453, 641, 673, 874
RsaNI GTAC 6 cut(s) 47, 409, 452, 640, 672, 873
SaqAI TTAA 4 cut(s) 56, 96, 177, 831
SatI GCNGC 1 cut(s) 1165
Sau96I GGNCC 2 cut(s) 5, 1192
ScaI AGTACT 3 cut(s) 48, 410, 874
SchI GAGTC 3 cut(s) 411, 1132, 1194
ScrFI CCNGG 5 cut(s) 103, 144, 636, 845, 1110
SfaNI GCATC 6 cut(s) 64, 280, 510, 560, 781, 871
SfcI CTRYAG 1 cut(s) 486
SinI GGWCC 1 cut(s) 5
SmlI CTYRAG 1 cut(s) 724
SmoI CTYRAG 1 cut(s) 724
Sse9I AATT 3 cut(s) 349, 1035, 1156
SsiI CCGC 1 cut(s) 884
SspMI CTAG 1 cut(s) 44
StyD4I CCNGG 5 cut(s) 101, 142, 634, 843, 1108
TaaI ACNGT 5 cut(s) 377, 408, 678, 736, 877
TaiI ACGT 2 cut(s) 114, 1108
TaqI TCGA 4 cut(s) 228, 336, 849, 879
TasI AATT 3 cut(s) 349, 1035, 1156
TatI WGTACW 3 cut(s) 46, 408, 872
TfiI GAWTC 3 cut(s) 241, 493, 758
Tru1I TTAA 4 cut(s) 56, 96, 177, 831
Tru9I TTAA 4 cut(s) 56, 96, 177, 831
TseFI GTSAC 1 cut(s) 601
TseI GCWGC 1 cut(s) 1164
Tsp45I GTSAC 1 cut(s) 601
TspDTI ATGAA 3 cut(s) 246, 521, 1014
TspGWI ACGGA 1 cut(s) 821
Van91I CCANNNNNTGG 2 cut(s) 938, 1040
VpaK11BI GGWCC 1 cut(s) 5
XapI RAATTY 1 cut(s) 349
XceI RCATGY 1 cut(s) 452
XcmI CCANNNNNNNNNTGG 1 cut(s) 971
XspI CTAG 1 cut(s) 44
ZrmI AGTACT 3 cut(s) 48, 410, 874
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.