Rw1G002850

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0001567
Physical Location & Seq
Reverse (-)
5221260 .. 5231198
9939 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G002850.1

Sequence Viewer

Length: 828 bp
ATGACACCTTCTTGTCAAAGTCTGGTGCACCGGTTAGCTGCACTAGTATTGGGATTAAGCTTACCATGTTTAGATGTTATTCGGATCAATAAAGTTAAGACTAGGACTGGCGTTTATGTCTCCCCTAAGTTTGTGTTGGAACCAGGGTTAGTTGTAGACAAGTTTTGTTTAACATTTACTTCCCAAAAGACGAGTTCTGTGGAAGCAAAGCAGATTGGTTTCGAGGATATTAAAGAACCAGATTTTAAGTACTATGGACTTGGGTTAGAAACTAGAAAGACAGATACACATGTCCTGGAGCCTTTTGGAATAGAGATTCGCAACCCTACAGAGATTCTTGTTGGATATGAGGAGAGATGGATGCCCAATGCTCATGCAGTTGATACTCGGGGCGTGGAGGATAGGCTAGGATGCACTGAATGCAGGAATGATCTTTATAATGTAATAAAATATGGACGAGGCCAGCCGTTGATGCCAGGGTACATGGGGAGTTTGCACTGCAGTTATCATGGTAGACAAAGCCTCTACTTGAGATACACTGTGAAGTGGGTTGATTGGTGTGATTCTATTGTGCATGTCAAGATTTATATCTTTGCTGTCACTGATAGGACGGATCATTCAGCAGGACCCTCTCTTCAACATGATTGCAGGGTTAGCAAACTAAAATCATCGCATAACAAACCGGGTTCTATGTTCGTCAATACCAATTTATGGACACTTGGACAAAGCGAGGAAGTTGGAGACGAGGCTGGTTACATTGTTGGAATGTCAACTTGCTATCCACATCTGGGCTCTGTCAAAATAAAGGATGGGATACTCTGGTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SURNod19

Protein Analysis

275

Amino Acids

31.0

Weight (kDa)

7.59

Isoelectric Point (pI)

44.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SURNod19 PF07712 82 - 219 7.8e-46 Stress up-regulated Nod 19
SURNod19 PF07712 237 - 271 5.8e-10 Stress up-regulated Nod 19
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 438
AccB7I CCANNNNNTGG 1 cut(s) 711
AccI GTMKAC 2 cut(s) 156, 514
AclWI GGATC 2 cut(s) 92, 621
AfaI GTAC 2 cut(s) 251, 482
AfiI CCNNNNNNNGG 2 cut(s) 711, 788
AflIII ACRYGT 1 cut(s) 289
AgeI ACCGGT 1 cut(s) 30
AgsI TTSAA 1 cut(s) 638
AhlI ACTAGT 1 cut(s) 43
AjnI CCWGG 3 cut(s) 142, 294, 475
AluBI AGCT 2 cut(s) 38, 60
AluI AGCT 2 cut(s) 38, 60
Alw21I GWGCWC 1 cut(s) 30
Alw26I GTCTC 2 cut(s) 124, 735
Alw44I GTGCAC 1 cut(s) 26
AlwI GGATC 2 cut(s) 92, 621
Ama87I CYCGRG 1 cut(s) 387
AoxI GGCC 1 cut(s) 460
ApaLI GTGCAC 1 cut(s) 26
ApeKI GCWGC 1 cut(s) 38
AsiGI ACCGGT 1 cut(s) 30
AspS9I GGNCC 1 cut(s) 626
AsuC2I CCSGG 1 cut(s) 684
AvaI CYCGRG 1 cut(s) 387
AvaII GGWCC 1 cut(s) 626
BaeGI GKGCMC 1 cut(s) 30
BaeI ACNNNNGTAYC 3 cut(s) 276, 309, 806
BanII GRGCYC 1 cut(s) 794
Bbv12I GWGCWC 1 cut(s) 30
BbvI GCAGC 1 cut(s) 25
BccI CCATC 2 cut(s) 351, 803
BceAI ACGGC 1 cut(s) 451
BciT130I CCWGG 3 cut(s) 144, 296, 477
BciVI GTATCC 1 cut(s) 807
BcnI CCSGG 1 cut(s) 684
BcoDI GTCTC 2 cut(s) 124, 735
BcuI ACTAGT 1 cut(s) 43
BfaI CTAG 4 cut(s) 44, 102, 273, 407
BfmI CTRYAG 2 cut(s) 327, 499
BfuI GTATCC 1 cut(s) 807
BisI GCNGC 1 cut(s) 39
BlsI GCNGC 1 cut(s) 40
BmcAI AGTACT 1 cut(s) 251
Bme1390I CCNGG 4 cut(s) 144, 296, 477, 684
Bme18I GGWCC 1 cut(s) 626
BmeT110I CYCGRG 1 cut(s) 387
BmgT120I GGNCC 1 cut(s) 626
BmiI GGNNCC 3 cut(s) 141, 300, 628
BmrFI CCNGG 4 cut(s) 144, 296, 477, 684
BmsI GCATC 3 cut(s) 351, 401, 462
BpmI CTGGAG 1 cut(s) 317
BpuEI CTTGAG 1 cut(s) 550
BpuMI CCSGG 1 cut(s) 684
BsaBI GATNNNNATC 1 cut(s) 587
BsaJI CCNNGG 2 cut(s) 143, 476
BsaWI WCCGGW 1 cut(s) 30
Bsc4I CCNNNNNNNGG 2 cut(s) 711, 788
Bse118I RCCGGY 1 cut(s) 30
Bse1I ACTGG 1 cut(s) 112
Bse8I GATNNNNATC 1 cut(s) 587
BseBI CCWGG 3 cut(s) 144, 296, 477
BseDI CCNNGG 2 cut(s) 143, 476
BseGI GGATG 3 cut(s) 366, 416, 814
BseJI GATNNNNATC 1 cut(s) 587
BseLI CCNNNNNNNGG 2 cut(s) 711, 788
BseNI ACTGG 1 cut(s) 112
BseRI GAGGAG 1 cut(s) 365
BseSI GKGCMC 1 cut(s) 30
BseXI GCAGC 1 cut(s) 25
BsgI GTGCAG 1 cut(s) 24
BshFI GGCC 1 cut(s) 462
BshTI ACCGGT 1 cut(s) 30
BsiHKAI GWGCWC 1 cut(s) 30
BsiHKCI CYCGRG 1 cut(s) 387
BsiSI CCGG 2 cut(s) 31, 683
BslI CCNNNNNNNGG 2 cut(s) 711, 788
BsmAI GTCTC 2 cut(s) 124, 735
BsmBI CGTCTC 1 cut(s) 735
BsmI GAATGC 1 cut(s) 425
BsnI GGCC 1 cut(s) 462
BsoBI CYCGRG 1 cut(s) 387
Bsp1286I GDGCHC 2 cut(s) 30, 794
Bsp143I GATC 3 cut(s) 84, 430, 613
BspANI GGCC 1 cut(s) 462
BspLI GGNNCC 3 cut(s) 141, 300, 628
BspMAI CTGCAG 1 cut(s) 503
BspPI GGATC 2 cut(s) 92, 621
BsrFI RCCGGY 1 cut(s) 30
BsrI ACTGG 1 cut(s) 112
BssAI RCCGGY 1 cut(s) 30
BssECI CCNNGG 2 cut(s) 143, 476
BssMI GATC 3 cut(s) 84, 430, 613
Bst2UI CCWGG 3 cut(s) 144, 296, 477
Bst4CI ACNGT 1 cut(s) 541
Bst6I CTCTTC 1 cut(s) 639
BstAPI GCANNNNNTGC 1 cut(s) 420
BstC8I GCNNGC 1 cut(s) 464
BstDEI CTNAG 1 cut(s) 126
BstF5I GGATG 3 cut(s) 366, 416, 814
BstKTI GATC 3 cut(s) 87, 433, 616
BstMAI GTCTC 2 cut(s) 124, 735
BstMBI GATC 3 cut(s) 84, 430, 613
BstMWI GCNNNNNNNGC 3 cut(s) 420, 472, 654
BstNI CCWGG 3 cut(s) 144, 296, 477
BstNSI RCATGY 2 cut(s) 293, 578
BstSCI CCNGG 4 cut(s) 142, 294, 475, 682
BstSFI CTRYAG 2 cut(s) 327, 499
BstSLI GKGCMC 1 cut(s) 30
BstV1I GCAGC 1 cut(s) 25
BsuI GTATCC 1 cut(s) 807
BsuRI GGCC 1 cut(s) 462
BtgZI GCGATG 1 cut(s) 654
BtsCI GGATG 3 cut(s) 366, 416, 814
BtsI GCAGTG 1 cut(s) 496
BtsIMutI CAGTG 4 cut(s) 414, 496, 537, 600
Cac8I GCNNGC 1 cut(s) 464
Cfr10I RCCGGY 1 cut(s) 30
Cfr13I GGNCC 1 cut(s) 626
Csp6I GTAC 2 cut(s) 250, 481
CspAI ACCGGT 1 cut(s) 30
CviAII CATG 7 cut(s) 66, 290, 374, 484, 509, 575, 641
CviJI RGCY 9 cut(s) 38, 60, 301, 406, 462, 466, 522, 749, 792
CviKI_1 RGCY 9 cut(s) 38, 60, 301, 406, 462, 466, 522, 749, 792
CviQI GTAC 2 cut(s) 250, 481
DdeI CTNAG 1 cut(s) 126
DpnI GATC 3 cut(s) 86, 432, 615
DpnII GATC 3 cut(s) 84, 430, 613
Eam1104I CTCTTC 1 cut(s) 639
EarI CTCTTC 1 cut(s) 639
Eco24I GRGCYC 1 cut(s) 794
Eco47I GGWCC 1 cut(s) 626
Eco88I CYCGRG 1 cut(s) 387
EcoO109I RGGNCCY 1 cut(s) 626
EcoRII CCWGG 3 cut(s) 142, 294, 475
EcoT38I GRGCYC 1 cut(s) 794
Esp3I CGTCTC 1 cut(s) 735
FaeI CATG 7 cut(s) 69, 293, 377, 487, 512, 578, 644
FatI CATG 7 cut(s) 65, 289, 373, 483, 508, 574, 640
FblI GTMKAC 2 cut(s) 156, 514
Fnu4HI GCNGC 1 cut(s) 39
FokI GGATG 3 cut(s) 373, 423, 821
FriOI GRGCYC 1 cut(s) 794
Fsp4HI GCNGC 1 cut(s) 39
FspBI CTAG 4 cut(s) 44, 102, 273, 407
GluI GCNGC 1 cut(s) 39
GsuI CTGGAG 1 cut(s) 317
HaeIII GGCC 1 cut(s) 462
HapII CCGG 2 cut(s) 31, 683
Hin1II CATG 7 cut(s) 69, 293, 377, 487, 512, 578, 644
HincII GTYRAC 1 cut(s) 771
HindII GTYRAC 1 cut(s) 771
HindIII AAGCTT 1 cut(s) 58
HinfI GANTC 3 cut(s) 316, 334, 563
HpaII CCGG 2 cut(s) 31, 683
Hpy166II GTNNAC 4 cut(s) 28, 157, 515, 771
Hpy188I TCNGA 1 cut(s) 84
Hpy188III TCNNGA 1 cut(s) 580
Hpy8I GTNNAC 4 cut(s) 28, 157, 515, 771
HpyAV CCTTC 1 cut(s) 18
HpyCH4III ACNGT 1 cut(s) 541
HpyCH4V TGCA 9 cut(s) 28, 41, 377, 414, 423, 496, 501, 574, 648
HpyF10VI GCNNNNNNNGC 3 cut(s) 420, 472, 654
HpyF3I CTNAG 1 cut(s) 126
Hsp92II CATG 7 cut(s) 69, 293, 377, 487, 512, 578, 644
Kzo9I GATC 3 cut(s) 84, 430, 613
LmnI GCTCC 1 cut(s) 298
Lsp1109I GCAGC 1 cut(s) 25
LweI GCATC 3 cut(s) 351, 401, 462
MaeI CTAG 4 cut(s) 44, 102, 273, 407
MaeIII GTNAC 2 cut(s) 598, 752
MalI GATC 3 cut(s) 86, 432, 615
MboI GATC 3 cut(s) 84, 430, 613
MboII GAAGA 1 cut(s) 626
MhlI GDGCHC 2 cut(s) 30, 794
MluCI AATT 1 cut(s) 706
MmeI TCCRAC 4 cut(s) 117, 322, 718, 742
MnlI CCTC 8 cut(s) 217, 343, 391, 452, 533, 640, 724, 739
MseI TTAA 5 cut(s) 56, 96, 170, 231, 246
MspI CCGG 2 cut(s) 31, 683
MspR9I CCNGG 4 cut(s) 144, 296, 477, 684
Mva1269I GAATGC 1 cut(s) 425
MvaI CCWGG 3 cut(s) 144, 296, 477
MwoI GCNNNNNNNGC 3 cut(s) 420, 472, 654
NciI CCSGG 1 cut(s) 684
NdeII GATC 3 cut(s) 84, 430, 613
NlaIII CATG 7 cut(s) 69, 293, 377, 487, 512, 578, 644
NlaIV GGNNCC 3 cut(s) 141, 300, 628
NmuCI GTSAC 1 cut(s) 598
NspI RCATGY 2 cut(s) 293, 578
PciI ACATGT 1 cut(s) 289
PctI GAATGC 1 cut(s) 425
PfeI GAWTC 3 cut(s) 316, 334, 563
PflMI CCANNNNNTGG 1 cut(s) 711
PfoI TCCNGGA 1 cut(s) 294
PinAI ACCGGT 1 cut(s) 30
PkrI GCNGC 1 cut(s) 40
PpuMI RGGWCCY 1 cut(s) 626
PscI ACATGT 1 cut(s) 289
PsiI TTATAA 1 cut(s) 438
Psp5II RGGWCCY 1 cut(s) 626
Psp6I CCWGG 3 cut(s) 142, 294, 475
PspGI CCWGG 3 cut(s) 142, 294, 475
PspN4I GGNNCC 3 cut(s) 141, 300, 628
PspPI GGNCC 1 cut(s) 626
PspPPI RGGWCCY 1 cut(s) 626
PstI CTGCAG 1 cut(s) 503
RsaI GTAC 2 cut(s) 251, 482
RsaNI GTAC 2 cut(s) 250, 481
SaqAI TTAA 5 cut(s) 56, 96, 170, 231, 246
SatI GCNGC 1 cut(s) 39
Sau3AI GATC 3 cut(s) 84, 430, 613
Sau96I GGNCC 1 cut(s) 626
ScaI AGTACT 1 cut(s) 251
ScrFI CCNGG 4 cut(s) 144, 296, 477, 684
SduI GDGCHC 2 cut(s) 30, 794
SetI ASST 3 cut(s) 10, 40, 62
SfaNI GCATC 3 cut(s) 351, 401, 462
SfcI CTRYAG 2 cut(s) 327, 499
SinI GGWCC 1 cut(s) 626
SmlI CTYRAG 1 cut(s) 529
SmoI CTYRAG 1 cut(s) 529
SpeI ACTAGT 1 cut(s) 43
Sse9I AATT 1 cut(s) 706
SspMI CTAG 4 cut(s) 44, 102, 273, 407
StyD4I CCNGG 4 cut(s) 142, 294, 475, 682
TaaI ACNGT 1 cut(s) 541
TaqI TCGA 1 cut(s) 222
TasI AATT 1 cut(s) 706
TatI WGTACW 1 cut(s) 249
TfiI GAWTC 3 cut(s) 316, 334, 563
Tru1I TTAA 5 cut(s) 56, 96, 170, 231, 246
Tru9I TTAA 5 cut(s) 56, 96, 170, 231, 246
TscAI CASTG 4 cut(s) 421, 503, 544, 607
TseFI GTSAC 1 cut(s) 598
TseI GCWGC 1 cut(s) 38
Tsp45I GTSAC 1 cut(s) 598
TspGWI ACGGA 1 cut(s) 626
TspRI CASTG 4 cut(s) 421, 503, 544, 607
Van91I CCANNNNNTGG 1 cut(s) 711
VneI GTGCAC 1 cut(s) 26
VpaK11BI GGWCC 1 cut(s) 626
XceI RCATGY 2 cut(s) 293, 578
XmiI GTMKAC 2 cut(s) 156, 514
XspI CTAG 4 cut(s) 44, 102, 273, 407
ZrmI AGTACT 1 cut(s) 251
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.