Rh4BG158600

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0001567
Physical Location & Seq
Forward (+)
28627784 .. 28628650
867 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG158600.1

Sequence Viewer

Length: 867 bp
ATGGCACCTTGTCAAATTTTGGTTCTTTTGTTAGCTGTGCTAGTGCTGGGATTAAGCCTACCATGTTCAGATGCTATTCGGATCAATAAGGTTAAGATCAGGACTAGCGTTTATGTCTCCCCTGAGTTTGTGTTGGAACCAGGGTCAGTTGCTAACAAGTATTTCTATAACATTCACTTCCCAAGAGGTCATATTGCTATGAAGTATTTCAATGCTGAAGTGATCGATGAAGAAGGGAATCCTATTCCTCTTCATGAGACTTATCTGCATCATTGGGTTCTTGAAAGATATTACGCCCAGACAAGCTATGTGGAGTCAAGTGATTTCGAGGATAATAAAGATCCGGAGTTTAAGATTGTGAGAAATAGTGGATTGTGCCAGAACATTGGTCAGTACTATGGACTCGGGTCAGAAACACGAAAGACAGATACACATGTACCGGATCCTTTTGGAATAGAGATTGGCAACCCTGCAGAGATTCCTGCTGGATATGAGGAGAGATGGATGCTCAATGTTCATGCTATTGATACTCGGGGTGCAGAGGATAGGATAGGATGCACTGAATGCAGGTGTGATCTGTATAATGTAACAAAAGATGGACAAGGCCAGCCGTTGAGTCCAGGGTACACAGGGGGTTTGCAGTGCTGTTATGATGGTACACAGTGCAGCGTAAAACAAGGCTATAATGGTGTCAAGAGAAGCCTCTACTTGAGATACACTGTGAAGTGGGTTGATTGGTCCGATTCCATTGTGCCTGTCAAGATTTATATCTTTGATGTCACTGATAAAACAAATCATTCATCAGGACCCTCTCTTAAACATGATTGCCGGGTAAGTGAACTTGACTCATTGCATAACAAGTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SURNod19

Protein Analysis

288

Amino Acids

32.55

Weight (kDa)

5.68

Isoelectric Point (pI)

43.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SURNod19 PF07712 32 - 278 2e-120 Stress up-regulated Nod 19
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 558
Acc36I ACCTGC 1 cut(s) 558
AccB1I GGYRCC 1 cut(s) 4
AccIII TCCGGA 1 cut(s) 343
AclWI GGATC 4 cut(s) 89, 335, 437, 450
AcsI RAATTY 1 cut(s) 15
AcuI CTGAAG 1 cut(s) 237
AfaI GTAC 4 cut(s) 395, 438, 626, 658
AflIII ACRYGT 1 cut(s) 433
AgsI TTSAA 2 cut(s) 211, 284
AjnI CCWGG 2 cut(s) 139, 619
AluBI AGCT 2 cut(s) 35, 306
AluI AGCT 2 cut(s) 35, 306
Alw26I GTCTC 2 cut(s) 121, 251
AlwI GGATC 4 cut(s) 89, 335, 437, 450
Ama87I CYCGRG 2 cut(s) 404, 531
Aor13HI TCCGGA 1 cut(s) 343
AoxI GGCC 1 cut(s) 604
ApeKI GCWGC 1 cut(s) 666
ApoI RAATTY 1 cut(s) 15
Asp700I GAANNNNTTC 1 cut(s) 206
AspS9I GGNCC 2 cut(s) 738, 806
AsuC2I CCSGG 1 cut(s) 830
AvaI CYCGRG 2 cut(s) 404, 531
AvaII GGWCC 2 cut(s) 738, 806
BaeI ACNNNNGTAYC 4 cut(s) 420, 420, 453, 453
BamHI GGATCC 1 cut(s) 442
BanI GGYRCC 1 cut(s) 4
BbvI GCAGC 1 cut(s) 678
BccI CCATC 3 cut(s) 495, 590, 647
BceAI ACGGC 1 cut(s) 595
BciT130I CCWGG 2 cut(s) 141, 621
BcnI CCSGG 1 cut(s) 830
BcoDI GTCTC 2 cut(s) 121, 251
BfaI CTAG 2 cut(s) 41, 105
BfmI CTRYAG 1 cut(s) 471
BfuAI ACCTGC 1 cut(s) 558
BisI GCNGC 1 cut(s) 667
BlsI GCNGC 1 cut(s) 668
BmcAI AGTACT 1 cut(s) 395
Bme1390I CCNGG 3 cut(s) 141, 621, 830
Bme18I GGWCC 2 cut(s) 738, 806
BmeT110I CYCGRG 2 cut(s) 404, 531
BmgT120I GGNCC 2 cut(s) 738, 806
BmiI GGNNCC 4 cut(s) 6, 138, 444, 808
BmrFI CCNGG 3 cut(s) 141, 621, 830
BmsI GCATC 4 cut(s) 61, 277, 495, 545
BoxI GACNNNNGTC 1 cut(s) 406
BpuEI CTTGAG 1 cut(s) 730
BpuMI CCSGG 1 cut(s) 830
Bsa29I ATCGAT 1 cut(s) 225
BsaBI GATNNNNATC 1 cut(s) 767
BsaJI CCNNGG 2 cut(s) 140, 620
BsaWI WCCGGW 2 cut(s) 343, 439
Bse3DI GCAATG 1 cut(s) 848
Bse8I GATNNNNATC 1 cut(s) 767
BseAI TCCGGA 1 cut(s) 343
BseBI CCWGG 2 cut(s) 141, 621
BseCI ATCGAT 1 cut(s) 225
BseDI CCNNGG 2 cut(s) 140, 620
BseGI GGATG 2 cut(s) 510, 560
BseJI GATNNNNATC 1 cut(s) 767
BseMI GCAATG 1 cut(s) 848
BseMII CTCAG 1 cut(s) 114
BseRI GAGGAG 1 cut(s) 509
BseXI GCAGC 1 cut(s) 678
BseYI CCCAGC 1 cut(s) 46
BsgI GTGCAG 2 cut(s) 558, 685
BshFI GGCC 1 cut(s) 606
BshNI GGYRCC 1 cut(s) 4
BshVI ATCGAT 1 cut(s) 225
BsiHKCI CYCGRG 2 cut(s) 404, 531
BsiSI CCGG 3 cut(s) 344, 440, 829
BsmAI GTCTC 2 cut(s) 121, 251
BsmI GAATGC 1 cut(s) 569
BsnI GGCC 1 cut(s) 606
BsoBI CYCGRG 2 cut(s) 404, 531
Bsp13I TCCGGA 1 cut(s) 343
Bsp143I GATC 6 cut(s) 81, 96, 222, 340, 442, 574
BspANI GGCC 1 cut(s) 606
BspCNI CTCAG 1 cut(s) 115
BspDI ATCGAT 1 cut(s) 225
BspEI TCCGGA 1 cut(s) 343
BspHI TCATGA 1 cut(s) 253
BspLI GGNNCC 4 cut(s) 6, 138, 444, 808
BspMAI CTGCAG 1 cut(s) 475
BspMI ACCTGC 1 cut(s) 558
BspPI GGATC 4 cut(s) 89, 335, 437, 450
BspT107I GGYRCC 1 cut(s) 4
BsrDI GCAATG 1 cut(s) 848
BssECI CCNNGG 2 cut(s) 140, 620
BssMI GATC 6 cut(s) 81, 96, 222, 340, 442, 574
Bst2UI CCWGG 2 cut(s) 141, 621
Bst4CI ACNGT 2 cut(s) 663, 721
Bst6I CTCTTC 1 cut(s) 255
BstAPI GCANNNNNTGC 1 cut(s) 564
BstC8I GCNNGC 1 cut(s) 608
BstDEI CTNAG 1 cut(s) 123
BstF5I GGATG 2 cut(s) 510, 560
BstKTI GATC 6 cut(s) 84, 99, 225, 343, 445, 577
BstMAI GTCTC 2 cut(s) 121, 251
BstMBI GATC 6 cut(s) 81, 96, 222, 340, 442, 574
BstMWI GCNNNNNNNGC 1 cut(s) 564
BstNI CCWGG 2 cut(s) 141, 621
BstNSI RCATGY 1 cut(s) 437
BstPAI GACNNNNGTC 1 cut(s) 406
BstSCI CCNGG 3 cut(s) 139, 619, 828
BstSFI CTRYAG 1 cut(s) 471
BstV1I GCAGC 1 cut(s) 678
BstX2I RGATCY 2 cut(s) 340, 442
BstXI CCANNNNNNTGG 1 cut(s) 386
BstYI RGATCY 2 cut(s) 340, 442
Bsu15I ATCGAT 1 cut(s) 225
BsuRI GGCC 1 cut(s) 606
BsuTUI ATCGAT 1 cut(s) 225
BtsCI GGATG 2 cut(s) 510, 560
BtsI GCAGTG 1 cut(s) 647
BtsIMutI CAGTG 5 cut(s) 558, 647, 668, 717, 780
BveI ACCTGC 1 cut(s) 558
Cac8I GCNNGC 1 cut(s) 608
CciI TCATGA 1 cut(s) 253
Cfr13I GGNCC 2 cut(s) 738, 806
ClaI ATCGAT 1 cut(s) 225
Csp6I GTAC 4 cut(s) 394, 437, 625, 657
CspCI CAANNNNNGTGG 2 cut(s) 291, 326
CviAII CATG 5 cut(s) 63, 254, 434, 518, 821
CviJI RGCY 7 cut(s) 35, 57, 306, 606, 610, 681, 702
CviKI_1 RGCY 7 cut(s) 35, 57, 306, 606, 610, 681, 702
CviQI GTAC 4 cut(s) 394, 437, 625, 657
DdeI CTNAG 1 cut(s) 123
DpnI GATC 6 cut(s) 83, 98, 224, 342, 444, 576
DpnII GATC 6 cut(s) 81, 96, 222, 340, 442, 574
Eam1104I CTCTTC 1 cut(s) 255
EarI CTCTTC 1 cut(s) 255
Eco47I GGWCC 2 cut(s) 738, 806
Eco57I CTGAAG 1 cut(s) 237
Eco88I CYCGRG 2 cut(s) 404, 531
EcoO109I RGGNCCY 1 cut(s) 806
EcoRII CCWGG 2 cut(s) 139, 619
FaeI CATG 5 cut(s) 66, 257, 437, 521, 824
FatI CATG 5 cut(s) 62, 253, 433, 517, 820
Fnu4HI GCNGC 1 cut(s) 667
FokI GGATG 2 cut(s) 517, 567
Fsp4HI GCNGC 1 cut(s) 667
FspBI CTAG 2 cut(s) 41, 105
GluI GCNGC 1 cut(s) 667
GsaI CCCAGC 1 cut(s) 50
HaeIII GGCC 1 cut(s) 606
HapII CCGG 3 cut(s) 344, 440, 829
Hin1II CATG 5 cut(s) 66, 257, 437, 521, 824
HinfI GANTC 7 cut(s) 238, 314, 402, 478, 616, 743, 845
HpaII CCGG 3 cut(s) 344, 440, 829
Hpy166II GTNNAC 3 cut(s) 627, 659, 839
Hpy188I TCNGA 4 cut(s) 70, 81, 412, 742
Hpy188III TCNNGA 7 cut(s) 100, 254, 281, 344, 694, 760, 804
Hpy8I GTNNAC 3 cut(s) 627, 659, 839
HpyAV CCTTC 1 cut(s) 227
HpyCH4III ACNGT 2 cut(s) 663, 721
HpyCH4V TGCA 8 cut(s) 268, 473, 539, 558, 567, 640, 666, 853
HpyF10VI GCNNNNNNNGC 1 cut(s) 564
HpyF3I CTNAG 1 cut(s) 123
Hsp92II CATG 5 cut(s) 66, 257, 437, 521, 824
Kpn2I TCCGGA 1 cut(s) 343
Kzo9I GATC 6 cut(s) 81, 96, 222, 340, 442, 574
Lsp1109I GCAGC 1 cut(s) 678
LweI GCATC 4 cut(s) 61, 277, 495, 545
MaeI CTAG 2 cut(s) 41, 105
MaeIII GTNAC 2 cut(s) 586, 778
MalI GATC 6 cut(s) 83, 98, 224, 342, 444, 576
MboI GATC 6 cut(s) 81, 96, 222, 340, 442, 574
MboII GAAGA 2 cut(s) 242, 242
MflI RGATCY 2 cut(s) 340, 442
MluCI AATT 1 cut(s) 15
MlyI GAGTC 4 cut(s) 323, 396, 625, 839
MmeI TCCRAC 1 cut(s) 114
MnlI CCTC 7 cut(s) 179, 258, 322, 487, 535, 713, 820
MroI TCCGGA 1 cut(s) 343
MroXI GAANNNNTTC 1 cut(s) 206
MseI TTAA 4 cut(s) 53, 93, 351, 816
MspI CCGG 3 cut(s) 344, 440, 829
MspR9I CCNGG 3 cut(s) 141, 621, 830
Mva1269I GAATGC 1 cut(s) 569
MvaI CCWGG 2 cut(s) 141, 621
MwoI GCNNNNNNNGC 1 cut(s) 564
NciI CCSGG 1 cut(s) 830
NdeII GATC 6 cut(s) 81, 96, 222, 340, 442, 574
NlaIII CATG 5 cut(s) 66, 257, 437, 521, 824
NlaIV GGNNCC 4 cut(s) 6, 138, 444, 808
NmuCI GTSAC 1 cut(s) 778
NspI RCATGY 1 cut(s) 437
PagI TCATGA 1 cut(s) 253
PaqCI CACCTGC 1 cut(s) 558
PciI ACATGT 1 cut(s) 433
PctI GAATGC 1 cut(s) 569
PdmI GAANNNNTTC 1 cut(s) 206
PfeI GAWTC 3 cut(s) 238, 478, 743
PkrI GCNGC 1 cut(s) 668
PleI GAGTC 4 cut(s) 322, 396, 624, 839
PpsI GAGTC 4 cut(s) 322, 396, 624, 839
PpuMI RGGWCCY 1 cut(s) 806
PscI ACATGT 1 cut(s) 433
PshAI GACNNNNGTC 1 cut(s) 406
Psp5II RGGWCCY 1 cut(s) 806
Psp6I CCWGG 2 cut(s) 139, 619
PspFI CCCAGC 1 cut(s) 46
PspGI CCWGG 2 cut(s) 139, 619
PspN4I GGNNCC 4 cut(s) 6, 138, 444, 808
PspPI GGNCC 2 cut(s) 738, 806
PspPPI RGGWCCY 1 cut(s) 806
PstI CTGCAG 1 cut(s) 475
PsuI RGATCY 2 cut(s) 340, 442
RsaI GTAC 4 cut(s) 395, 438, 626, 658
RsaNI GTAC 4 cut(s) 394, 437, 625, 657
SaqAI TTAA 4 cut(s) 53, 93, 351, 816
SatI GCNGC 1 cut(s) 667
Sau3AI GATC 6 cut(s) 81, 96, 222, 340, 442, 574
Sau96I GGNCC 2 cut(s) 738, 806
ScaI AGTACT 1 cut(s) 395
SchI GAGTC 4 cut(s) 323, 396, 625, 839
ScrFI CCNGG 3 cut(s) 141, 621, 830
SetI ASST 6 cut(s) 10, 37, 93, 190, 308, 572
SfaNI GCATC 4 cut(s) 61, 277, 495, 545
SfcI CTRYAG 1 cut(s) 471
SinI GGWCC 2 cut(s) 738, 806
SmlI CTYRAG 1 cut(s) 709
SmoI CTYRAG 1 cut(s) 709
Sse9I AATT 1 cut(s) 15
SspMI CTAG 2 cut(s) 41, 105
StyD4I CCNGG 3 cut(s) 139, 619, 828
TaaI ACNGT 2 cut(s) 663, 721
TaqI TCGA 2 cut(s) 225, 327
TasI AATT 1 cut(s) 15
TatI WGTACW 1 cut(s) 393
TfiI GAWTC 3 cut(s) 238, 478, 743
Tru1I TTAA 4 cut(s) 53, 93, 351, 816
Tru9I TTAA 4 cut(s) 53, 93, 351, 816
TscAI CASTG 5 cut(s) 565, 647, 668, 724, 787
TseFI GTSAC 1 cut(s) 778
TseI GCWGC 1 cut(s) 666
Tsp45I GTSAC 1 cut(s) 778
TspDTI ATGAA 5 cut(s) 215, 242, 243, 506, 789
TspRI CASTG 5 cut(s) 565, 647, 668, 724, 787
VpaK11BI GGWCC 2 cut(s) 738, 806
XapI RAATTY 1 cut(s) 15
XceI RCATGY 1 cut(s) 437
XmnI GAANNNNTTC 1 cut(s) 206
XspI CTAG 2 cut(s) 41, 105
ZrmI AGTACT 1 cut(s) 395
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.