Rw7G008230

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0001567
Physical Location & Seq
Reverse (-)
7522446 .. 7525894
3449 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G008230.1

Sequence Viewer

Length: 1374 bp
ATGATATGTGGATCTGAAGATATGCTGCAACGGCCACCCTTCCGAGGTCGGCCTGTACTTTGCAAAGCTCGGAATCAGAACGCCGTCAAAGGACTGCATCCAAAAAGAAAATGGCACCTCCTTGTCATAAGTTTGGTACTTTTGTTAGCTGTGCTAGTGCTGGGGTTAAGCCTACCATCTCCAGATGCCATTCGGATCAATAAGGTCAAGACCAGGACTAGTGTTTATGTCTCCCCTAAGTTTGTGTTGGAACCAGGGTCAGTTGCAGACAAGTATTTCTATAACATTCACTTCCCAAGAGGTCATATTGCTATGAAGTATTTCAATGCTGAAGTGATCGATGAAGAAGGGAATCCTATTCCTCTTCATGAGACTTATCTGCATCATTGGGTTATTGAAAGATATTATGCCCTGACAAGTTATGTGGAACCGGAGCTGAGTGGTTTCGAGGATATTAAAGATCCGGATTTTAAGATTGTGAGAAATAGTGGATTGTGCCAGAATAATGTTCTTGGTCAGTACTATGGACTCGGGTCAGAAACTAGAAAGACAGATACACATGTACCGGATCCTTTTGGAATAGAGATCGGCAACCCTGCAGAGATTCCTGCAGGATATGAGGAGAGATGGATGCTCAATGTTCATGCTATTGATACTCGGGGCGCGGAGGATAGGTTGGGATGCACTGAATGCAGGTGTGATCTGTATAATGTAACAAAAGATGGATGGGGCCAGCCGTTGAGGCCAGGGTACACAGGGGGTTTGCACTGCTGTTATGATGGTACAAAGTGCAGAGTAAAACAAGGCTACAATGGTGTCAAGAGAAGCCTCTACTTGAGATACACTGTGAAGTGGGTTGATTGGTCTGATTCTATTGTGCCTGTCAAGATTTATATCTTTGATGTCACTGATAGAACGGATCATTCAGGAGGACCGTCTCTTCAACATGATTGCCGGAACGAATATAATGTTGAGCCTTGCCGTGTTGTTGATATGGTAAATGATCAATGCTTTGACAATCAAAGGGCAATGATTACTATGCCAACTGGTGGTTATATCGTCTATGGTGTAGCCCATCAGCACACTGGGGGGTGCGGCTCAACTCTATATGGAGAGGACGGACGGGTTCTATGTTCATCAATACCAATATATGGGCAAAGCGAGGAAGTAGGAGACGAGGCTGGTTACATTGTAGGAATGTCAACTTGCTATCCACATCCGGGCTCTGTCAAAATAAAGGATGGGGAGACTCTGGTTGTGGGATCTAATTACAGCAGCTTGCGGCTGCACATCGGAGTCATGGGCCTCTTCTACATTTTGGTTGCAGAGCACCTGCCAAAGTCCTCCTTGCTTAGCTTGGACTCTTCACTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SURNod19

Protein Analysis

457

Amino Acids

51.17

Weight (kDa)

6.28

Isoelectric Point (pI)

39.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SURNod19 PF07712 70 - 444 4.8e-183 Stress up-regulated Nod 19
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 684, 1341
Acc36I ACCTGC 2 cut(s) 684, 1341
AccB1I GGYRCC 1 cut(s) 114
AccB7I CCANNNNNTGG 2 cut(s) 1049, 1151
AccII CGCG 1 cut(s) 665
AccIII TCCGGA 1 cut(s) 463
AciI CCGC 3 cut(s) 665, 1095, 1282
AclWI GGATC 7 cut(s) 19, 203, 455, 563, 576, 927, 1270
AcoI YGGCCR 1 cut(s) 32
AcuI CTGAAG 2 cut(s) 36, 351
AfaI GTAC 6 cut(s) 57, 138, 521, 564, 752, 784
AfiI CCNNNNNNNGG 4 cut(s) 44, 1049, 1151, 1220
AflIII ACRYGT 1 cut(s) 559
AgsI TTSAA 3 cut(s) 325, 398, 944
AhlI ACTAGT 1 cut(s) 218
AjnI CCWGG 3 cut(s) 212, 253, 745
AluBI AGCT 5 cut(s) 68, 149, 436, 1278, 1356
AluI AGCT 5 cut(s) 68, 149, 436, 1278, 1356
Alw21I GWGCWC 1 cut(s) 1332
Alw26I GTCTC 5 cut(s) 235, 365, 942, 1167, 1241
AlwI GGATC 7 cut(s) 19, 203, 455, 563, 576, 927, 1270
Ama87I CYCGRG 2 cut(s) 530, 657
Aor13HI TCCGGA 1 cut(s) 463
AoxI GGCC 5 cut(s) 32, 50, 730, 743, 1303
ApeKI GCWGC 3 cut(s) 25, 1275, 1285
Asp700I GAANNNNTTC 1 cut(s) 320
AspLEI GCGC 1 cut(s) 665
AspS9I GGNCC 3 cut(s) 730, 932, 1303
AsuC2I CCSGG 1 cut(s) 1221
AvaI CYCGRG 2 cut(s) 530, 657
AvaII GGWCC 1 cut(s) 932
BaeI ACNNNNGTAYC 6 cut(s) 128, 161, 546, 546, 579, 579
BamHI GGATCC 1 cut(s) 568
BanI GGYRCC 1 cut(s) 114
BanII GRGCYC 1 cut(s) 1226
Bbv12I GWGCWC 1 cut(s) 1332
BbvI GCAGC 3 cut(s) 12, 1272, 1287
BccI CCATC 7 cut(s) 184, 621, 716, 720, 773, 1083, 1235
BceAI ACGGC 4 cut(s) 47, 68, 721, 966
BciT130I CCWGG 3 cut(s) 214, 255, 747
BclI TGATCA 1 cut(s) 1003
BcnI CCSGG 1 cut(s) 1221
BcoDI GTCTC 5 cut(s) 235, 365, 942, 1167, 1241
BcuI ACTAGT 1 cut(s) 218
BfaI CTAG 3 cut(s) 155, 219, 543
BfmI CTRYAG 2 cut(s) 597, 609
BfuAI ACCTGC 2 cut(s) 684, 1341
BglI GCCNNNNNGGC 1 cut(s) 742
BisI GCNGC 5 cut(s) 26, 1096, 1276, 1283, 1286
BlpI GCTNAGC 1 cut(s) 1352
BlsI GCNGC 5 cut(s) 27, 1097, 1277, 1284, 1287
BmcAI AGTACT 1 cut(s) 521
Bme1390I CCNGG 4 cut(s) 214, 255, 747, 1221
Bme18I GGWCC 1 cut(s) 932
BmeT110I CYCGRG 2 cut(s) 530, 657
BmgT120I GGNCC 3 cut(s) 730, 932, 1303
BmiI GGNNCC 5 cut(s) 116, 252, 429, 570, 731
BmrFI CCNGG 4 cut(s) 214, 255, 747, 1221
BmrI ACTGGG 1 cut(s) 1095
BmsI GCATC 5 cut(s) 106, 175, 391, 621, 671
BmuI ACTGGG 1 cut(s) 1095
BoxI GACNNNNGTC 1 cut(s) 532
BpmI CTGGAG 1 cut(s) 165
Bpu1102I GCTNAGC 1 cut(s) 1352
BpuEI CTTGAG 1 cut(s) 856
BpuMI CCSGG 1 cut(s) 1221
Bsa29I ATCGAT 1 cut(s) 339
BsaBI GATNNNNATC 1 cut(s) 893
BsaJI CCNNGG 3 cut(s) 43, 254, 746
BsaWI WCCGGW 3 cut(s) 430, 463, 565
BsaXI ACNNNNNCTCC 2 cut(s) 659, 689
Bsc4I CCNNNNNNNGG 4 cut(s) 44, 1049, 1151, 1220
Bse1I ACTGG 2 cut(s) 1051, 1090
Bse3DI GCAATG 1 cut(s) 1035
Bse8I GATNNNNATC 1 cut(s) 893
BseAI TCCGGA 1 cut(s) 463
BseBI CCWGG 3 cut(s) 214, 255, 747
BseCI ATCGAT 1 cut(s) 339
BseDI CCNNGG 3 cut(s) 43, 254, 746
BseGI GGATG 6 cut(s) 97, 636, 686, 731, 1216, 1246
BseJI GATNNNNATC 1 cut(s) 893
BseLI CCNNNNNNNGG 4 cut(s) 44, 1049, 1151, 1220
BseMI GCAATG 1 cut(s) 1035
BseMII CTCAG 1 cut(s) 428
BseNI ACTGG 2 cut(s) 1051, 1090
BseRI GAGGAG 1 cut(s) 635
BseXI GCAGC 3 cut(s) 12, 1272, 1287
BseYI CCCAGC 1 cut(s) 160
BsgI GTGCAG 2 cut(s) 811, 1271
Bsh1236I CGCG 1 cut(s) 665
BshFI GGCC 5 cut(s) 34, 52, 732, 745, 1305
BshNI GGYRCC 1 cut(s) 114
BshVI ATCGAT 1 cut(s) 339
BsiHKAI GWGCWC 1 cut(s) 1332
BsiHKCI CYCGRG 2 cut(s) 530, 657
BsiSI CCGG 5 cut(s) 431, 464, 566, 955, 1220
BslI CCNNNNNNNGG 4 cut(s) 44, 1049, 1151, 1220
BsmAI GTCTC 5 cut(s) 235, 365, 942, 1167, 1241
BsmBI CGTCTC 2 cut(s) 942, 1167
BsmI GAATGC 1 cut(s) 695
BsnI GGCC 5 cut(s) 34, 52, 732, 745, 1305
BsoBI CYCGRG 2 cut(s) 530, 657
Bsp1286I GDGCHC 2 cut(s) 1226, 1332
Bsp13I TCCGGA 1 cut(s) 463
Bsp1720I GCTNAGC 1 cut(s) 1352
BspACI CCGC 3 cut(s) 665, 1095, 1282
BspANI GGCC 5 cut(s) 34, 52, 732, 745, 1305
BspCNI CTCAG 1 cut(s) 429
BspDI ATCGAT 1 cut(s) 339
BspEI TCCGGA 1 cut(s) 463
BspFNI CGCG 1 cut(s) 665
BspHI TCATGA 1 cut(s) 367
BspLI GGNNCC 5 cut(s) 116, 252, 429, 570, 731
BspMAI CTGCAG 2 cut(s) 601, 613
BspMI ACCTGC 2 cut(s) 684, 1341
BspPI GGATC 7 cut(s) 19, 203, 455, 563, 576, 927, 1270
BspT107I GGYRCC 1 cut(s) 114
BsrDI GCAATG 1 cut(s) 1035
BsrI ACTGG 2 cut(s) 1051, 1090
BssECI CCNNGG 3 cut(s) 43, 254, 746
Bst2UI CCWGG 3 cut(s) 214, 255, 747
Bst4CI ACNGT 2 cut(s) 847, 936
Bst6I CTCTTC 4 cut(s) 369, 945, 1313, 1369
BstAPI GCANNNNNTGC 1 cut(s) 690
BstC8I GCNNGC 2 cut(s) 734, 1280
BstDEI CTNAG 3 cut(s) 237, 437, 1352
BstF5I GGATG 6 cut(s) 97, 636, 686, 731, 1216, 1246
BstFNI CGCG 1 cut(s) 665
BstHHI GCGC 1 cut(s) 665
BstMAI GTCTC 5 cut(s) 235, 365, 942, 1167, 1241
BstMWI GCNNNNNNNGC 3 cut(s) 31, 690, 742
BstNI CCWGG 3 cut(s) 214, 255, 747
BstNSI RCATGY 1 cut(s) 563
BstPAI GACNNNNGTC 1 cut(s) 532
BstSCI CCNGG 4 cut(s) 212, 253, 745, 1219
BstSFI CTRYAG 2 cut(s) 597, 609
BstUI CGCG 1 cut(s) 665
BstV1I GCAGC 3 cut(s) 12, 1272, 1287
BstX2I RGATCY 4 cut(s) 11, 460, 568, 1262
BstYI RGATCY 4 cut(s) 11, 460, 568, 1262
Bsu15I ATCGAT 1 cut(s) 339
BsuRI GGCC 5 cut(s) 34, 52, 732, 745, 1305
BsuTUI ATCGAT 1 cut(s) 339
BtsCI GGATG 6 cut(s) 97, 636, 686, 731, 1216, 1246
BtsI GCAGTG 1 cut(s) 766
BtsIMutI CAGTG 5 cut(s) 684, 766, 843, 906, 1083
BveI ACCTGC 2 cut(s) 684, 1341
Cac8I GCNNGC 2 cut(s) 734, 1280
CciI TCATGA 1 cut(s) 367
CfoI GCGC 1 cut(s) 665
Cfr13I GGNCC 3 cut(s) 730, 932, 1303
ClaI ATCGAT 1 cut(s) 339
Csp6I GTAC 6 cut(s) 56, 137, 520, 563, 751, 783
CspCI CAANNNNNGTGG 2 cut(s) 405, 440
CviAII CATG 5 cut(s) 368, 560, 644, 947, 1300
CviQI GTAC 6 cut(s) 56, 137, 520, 563, 751, 783
DdeI CTNAG 3 cut(s) 237, 437, 1352
EaeI YGGCCR 1 cut(s) 32
Eam1104I CTCTTC 4 cut(s) 369, 945, 1313, 1369
EarI CTCTTC 4 cut(s) 369, 945, 1313, 1369
Eco24I GRGCYC 1 cut(s) 1226
Eco47I GGWCC 1 cut(s) 932
Eco57I CTGAAG 2 cut(s) 36, 351
Eco88I CYCGRG 2 cut(s) 530, 657
EcoRII CCWGG 3 cut(s) 212, 253, 745
EcoT38I GRGCYC 1 cut(s) 1226
Esp3I CGTCTC 2 cut(s) 942, 1167
FaeI CATG 5 cut(s) 371, 563, 647, 950, 1303
FalI AAGNNNNNCTT 2 cut(s) 1331, 1363
FatI CATG 5 cut(s) 367, 559, 643, 946, 1299
FbaI TGATCA 1 cut(s) 1003
Fnu4HI GCNGC 5 cut(s) 26, 1096, 1276, 1283, 1286
FokI GGATG 6 cut(s) 84, 643, 693, 738, 1203, 1253
FriOI GRGCYC 1 cut(s) 1226
Fsp4HI GCNGC 5 cut(s) 26, 1096, 1276, 1283, 1286
FspBI CTAG 3 cut(s) 155, 219, 543
GlaI GCGC 1 cut(s) 664
GluI GCNGC 5 cut(s) 26, 1096, 1276, 1283, 1286
GsaI CCCAGC 1 cut(s) 164
GsuI CTGGAG 1 cut(s) 165
HaeIII GGCC 5 cut(s) 34, 52, 732, 745, 1305
HapII CCGG 5 cut(s) 431, 464, 566, 955, 1220
HhaI GCGC 1 cut(s) 665
Hin1II CATG 5 cut(s) 371, 563, 647, 950, 1303
Hin6I GCGC 1 cut(s) 663
HinP1I GCGC 1 cut(s) 663
HincII GTYRAC 1 cut(s) 1203
HindII GTYRAC 1 cut(s) 1203
HinfI GANTC 8 cut(s) 73, 352, 528, 604, 869, 1249, 1296, 1361
HpaII CCGG 5 cut(s) 431, 464, 566, 955, 1220
Hpy166II GTNNAC 2 cut(s) 753, 1203
Hpy188I TCNGA 8 cut(s) 16, 44, 72, 78, 195, 538, 868, 1295
Hpy188III TCNNGA 7 cut(s) 182, 208, 368, 464, 820, 886, 927
Hpy8I GTNNAC 2 cut(s) 753, 1203
HpyAV CCTTC 2 cut(s) 49, 341
HpyCH4III ACNGT 2 cut(s) 847, 936
HpyF10VI GCNNNNNNNGC 3 cut(s) 31, 690, 742
HpyF3I CTNAG 3 cut(s) 237, 437, 1352
Hsp92II CATG 5 cut(s) 371, 563, 647, 950, 1303
HspAI GCGC 1 cut(s) 663
Kpn2I TCCGGA 1 cut(s) 463
Ksp22I TGATCA 1 cut(s) 1003
LmnI GCTCC 1 cut(s) 433
Lsp1109I GCAGC 3 cut(s) 12, 1272, 1287
LweI GCATC 5 cut(s) 106, 175, 391, 621, 671
MaeI CTAG 3 cut(s) 155, 219, 543
MaeIII GTNAC 3 cut(s) 712, 904, 1184
MboII GAAGA 6 cut(s) 29, 356, 356, 932, 1300, 1356
MflI RGATCY 4 cut(s) 11, 460, 568, 1262
MhlI GDGCHC 2 cut(s) 1226, 1332
MluCI AATT 1 cut(s) 1267
MlyI GAGTC 4 cut(s) 522, 1243, 1305, 1355
MmeI TCCRAC 1 cut(s) 228
MroI TCCGGA 1 cut(s) 463
MroXI GAANNNNTTC 1 cut(s) 320
MseI TTAA 3 cut(s) 167, 456, 471
MspI CCGG 5 cut(s) 431, 464, 566, 955, 1220
MspR9I CCNGG 4 cut(s) 214, 255, 747, 1221
Mva1269I GAATGC 1 cut(s) 695
MvaI CCWGG 3 cut(s) 214, 255, 747
MvnI CGCG 1 cut(s) 665
MwoI GCNNNNNNNGC 3 cut(s) 31, 690, 742
NciI CCSGG 1 cut(s) 1221
NlaIII CATG 5 cut(s) 371, 563, 647, 950, 1303
NlaIV GGNNCC 5 cut(s) 116, 252, 429, 570, 731
NmuCI GTSAC 1 cut(s) 904
NspI RCATGY 1 cut(s) 563
PagI TCATGA 1 cut(s) 367
PaqCI CACCTGC 2 cut(s) 684, 1341
PciI ACATGT 1 cut(s) 559
PctI GAATGC 1 cut(s) 695
PdmI GAANNNNTTC 1 cut(s) 320
PfeI GAWTC 4 cut(s) 73, 352, 604, 869
PflMI CCANNNNNTGG 2 cut(s) 1049, 1151
PkrI GCNGC 5 cut(s) 27, 1097, 1277, 1284, 1287
PleI GAGTC 4 cut(s) 522, 1243, 1304, 1355
PpsI GAGTC 4 cut(s) 522, 1243, 1304, 1355
PscI ACATGT 1 cut(s) 559
PshAI GACNNNNGTC 1 cut(s) 532
Psp6I CCWGG 3 cut(s) 212, 253, 745
PspFI CCCAGC 1 cut(s) 160
PspGI CCWGG 3 cut(s) 212, 253, 745
PspN4I GGNNCC 5 cut(s) 116, 252, 429, 570, 731
PspPI GGNCC 3 cut(s) 730, 932, 1303
PstI CTGCAG 2 cut(s) 601, 613
PsuI RGATCY 4 cut(s) 11, 460, 568, 1262
RsaI GTAC 6 cut(s) 57, 138, 521, 564, 752, 784
RsaNI GTAC 6 cut(s) 56, 137, 520, 563, 751, 783
SaqAI TTAA 3 cut(s) 167, 456, 471
SatI GCNGC 5 cut(s) 26, 1096, 1276, 1283, 1286
Sau96I GGNCC 3 cut(s) 730, 932, 1303
SbfI CCTGCAGG 1 cut(s) 613
ScaI AGTACT 1 cut(s) 521
SchI GAGTC 4 cut(s) 522, 1243, 1305, 1355
ScrFI CCNGG 4 cut(s) 214, 255, 747, 1221
SdaI CCTGCAGG 1 cut(s) 613
SduI GDGCHC 2 cut(s) 1226, 1332
SfaNI GCATC 5 cut(s) 106, 175, 391, 621, 671
SfcI CTRYAG 2 cut(s) 597, 609
SinI GGWCC 1 cut(s) 932
SmlI CTYRAG 1 cut(s) 835
SmoI CTYRAG 1 cut(s) 835
SpeI ACTAGT 1 cut(s) 218
Sse8387I CCTGCAGG 1 cut(s) 613
Sse9I AATT 1 cut(s) 1267
SsiI CCGC 3 cut(s) 665, 1095, 1282
SspMI CTAG 3 cut(s) 155, 219, 543
StyD4I CCNGG 4 cut(s) 212, 253, 745, 1219
TaaI ACNGT 2 cut(s) 847, 936
TaqI TCGA 2 cut(s) 339, 447
TasI AATT 1 cut(s) 1267
TatI WGTACW 2 cut(s) 55, 519
TauI GCSGC 2 cut(s) 1098, 1285
TfiI GAWTC 4 cut(s) 73, 352, 604, 869
Tru1I TTAA 3 cut(s) 167, 456, 471
Tru9I TTAA 3 cut(s) 167, 456, 471
TscAI CASTG 5 cut(s) 691, 773, 850, 913, 1090
TseFI GTSAC 1 cut(s) 904
TseI GCWGC 3 cut(s) 25, 1275, 1285
Tsp45I GTSAC 1 cut(s) 904
TspDTI ATGAA 5 cut(s) 329, 356, 357, 632, 1125
TspGWI ACGGA 2 cut(s) 932, 1134
TspRI CASTG 5 cut(s) 691, 773, 850, 913, 1090
Van91I CCANNNNNTGG 2 cut(s) 1049, 1151
VpaK11BI GGWCC 1 cut(s) 932
XceI RCATGY 1 cut(s) 563
XcmI CCANNNNNNNNNTGG 2 cut(s) 108, 1082
XmnI GAANNNNTTC 1 cut(s) 320
XspI CTAG 3 cut(s) 155, 219, 543
ZrmI AGTACT 1 cut(s) 521
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.