Rh7BG096800

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0001567
Physical Location & Seq
Reverse (-)
7140375 .. 7143749
3375 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG096800.1

Sequence Viewer

Length: 1020 bp
ATGGCACCTTCTTGTCAAAGTTTGGTTCTTTTGTTAGCTGTGCTAGTGCTGGGATTAAGCCTACCATGGTCAGATGCTATTCGGATCAATAAAGTTAAGACCAGGACTAGCGTTTATGTCTCCCCTAAGCTTGTGTTGGAACCAGGGTCAGTTGCAGACAAGTATTTCTATAACGTTTACTTCCCAAAAGGTCATATTGCTATCAAGTATTTCAATGCTGAAGTGATCGATGAAGAAGGGAATCCTATTCCTCTTCACGAGACTTATCTGCATCATTGGGTTCTCGGAAGATATTATGGCAGGACAAGTTATGTGGAACCAGAGCAGATTGGTTTCGATGATATTGACGAATCAGATTTTCAGTTCGTGAGAAACAGTGGTTTGTGCCAGAATAATGTTCTTGGACAGTACTATGGACTCGGGTCAGAAACACGAAGGACAGACACACATGTACCGGATCCTTTTGGAATAGAGATTGGCAACCCTGCAGAGATTCCTGCTGGATATGAGGAGAGATGGATGCTCAATGTTCATGCTATTGATACTCGGGGCGCAGAGGATAGGTTGGGATGCACTGAATGCAGGTGTGATCTGTATAATGTAACAAAAGATGGACGAGGTCAGCCGTTGAGGCCAGGGTACACGGGGGGTTTGCACTGCTGTTATGATGGTACACGGTGCAGTGTAAAACAAGGCTATAATGGTGTCAAGAGAAGCCTCTACTTGAGATACACAGTGAAGTGGGTTGATTGGTCTGATTCTATTGTGCCGGTCAAGATTTATATCTTTGATGCCACTGATAGAACGGATCATTCTTCTCTTCAACATGATTGCCGGGTCGAATATAATGTTGAGCCTTGCAGTACTGTTGATACGGTAAATGATCAGTGTTTTGACAATCAACGGGCAATCGTTACTATGCCAACTGGTGGTTATATCGTCTATGGTGTAGCCCATCAGCACACTGGGGGGCGCGGCTCAACTCTATATGGAGAGGTGCTTTTCTTGTACTCACAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SURNod19

Protein Analysis

339

Amino Acids

38.27

Weight (kDa)

5.55

Isoelectric Point (pI)

35.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SURNod19 PF07712 33 - 332 9.5e-141 Stress up-regulated Nod 19
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 573
Acc36I ACCTGC 1 cut(s) 573
AccB1I GGYRCC 1 cut(s) 4
AccB7I CCANNNNNTGG 1 cut(s) 929
AccII CGCG 1 cut(s) 975
AciI CCGC 1 cut(s) 975
AclI AACGTT 1 cut(s) 174
AclWI GGATC 4 cut(s) 92, 452, 465, 816
AcuI CTGAAG 1 cut(s) 240
AfaI GTAC 6 cut(s) 410, 453, 641, 673, 865, 1010
AfiI CCNNNNNNNGG 1 cut(s) 929
AflIII ACRYGT 1 cut(s) 448
AgsI TTSAA 2 cut(s) 214, 824
AjnI CCWGG 3 cut(s) 101, 142, 634
AluBI AGCT 2 cut(s) 38, 130
AluI AGCT 2 cut(s) 38, 130
Alw26I GTCTC 2 cut(s) 124, 254
AlwI GGATC 4 cut(s) 92, 452, 465, 816
Ama87I CYCGRG 2 cut(s) 419, 546
AoxI GGCC 1 cut(s) 632
AspLEI GCGC 2 cut(s) 554, 975
AsuC2I CCSGG 1 cut(s) 836
AvaI CYCGRG 2 cut(s) 419, 546
BaeI ACNNNNGTAYC 2 cut(s) 435, 468
BamHI GGATCC 1 cut(s) 457
BanI GGYRCC 1 cut(s) 4
BauI CACGAG 1 cut(s) 257
BccI CCATC 4 cut(s) 510, 605, 662, 963
BceAI ACGGC 1 cut(s) 610
BciT130I CCWGG 3 cut(s) 103, 144, 636
BclI TGATCA 1 cut(s) 883
BcnI CCSGG 1 cut(s) 836
BcoDI GTCTC 2 cut(s) 124, 254
BfaI CTAG 2 cut(s) 44, 108
BfmI CTRYAG 1 cut(s) 486
BfuAI ACCTGC 1 cut(s) 573
BglI GCCNNNNNGGC 1 cut(s) 631
BisI GCNGC 1 cut(s) 976
BlsI GCNGC 1 cut(s) 977
BmcAI AGTACT 2 cut(s) 410, 865
Bme1390I CCNGG 4 cut(s) 103, 144, 636, 836
BmeT110I CYCGRG 2 cut(s) 419, 546
BmiI GGNNCC 4 cut(s) 6, 141, 318, 459
BmrFI CCNGG 4 cut(s) 103, 144, 636, 836
BmrI ACTGGG 1 cut(s) 975
BmsI GCATC 5 cut(s) 64, 280, 510, 560, 781
BmuI ACTGGG 1 cut(s) 975
BoxI GACNNNNGTC 1 cut(s) 421
Bpu10I CCTNAGC 1 cut(s) 126
BpuEI CTTGAG 1 cut(s) 745
BpuMI CCSGG 1 cut(s) 836
Bsa29I ATCGAT 1 cut(s) 228
BsaBI GATNNNNATC 1 cut(s) 782
BsaJI CCNNGG 3 cut(s) 65, 143, 635
BsaWI WCCGGW 1 cut(s) 454
Bsc4I CCNNNNNNNGG 1 cut(s) 929
Bse118I RCCGGY 1 cut(s) 769
Bse1I ACTGG 2 cut(s) 931, 970
Bse8I GATNNNNATC 1 cut(s) 782
BseBI CCWGG 3 cut(s) 103, 144, 636
BseCI ATCGAT 1 cut(s) 228
BseDI CCNNGG 3 cut(s) 65, 143, 635
BseGI GGATG 2 cut(s) 525, 575
BseJI GATNNNNATC 1 cut(s) 782
BseLI CCNNNNNNNGG 1 cut(s) 929
BseNI ACTGG 2 cut(s) 931, 970
BseRI GAGGAG 1 cut(s) 524
BseYI CCCAGC 1 cut(s) 49
BsgI GTGCAG 1 cut(s) 700
Bsh1236I CGCG 1 cut(s) 975
BshFI GGCC 1 cut(s) 634
BshNI GGYRCC 1 cut(s) 4
BshVI ATCGAT 1 cut(s) 228
BsiHKCI CYCGRG 2 cut(s) 419, 546
BsiSI CCGG 3 cut(s) 455, 770, 835
BslI CCNNNNNNNGG 1 cut(s) 929
BsmAI GTCTC 2 cut(s) 124, 254
BsmI GAATGC 1 cut(s) 584
BsnI GGCC 1 cut(s) 634
BsoBI CYCGRG 2 cut(s) 419, 546
Bsp143I GATC 6 cut(s) 84, 225, 457, 589, 808, 883
Bsp19I CCATGG 1 cut(s) 65
BspACI CCGC 1 cut(s) 975
BspANI GGCC 1 cut(s) 634
BspDI ATCGAT 1 cut(s) 228
BspFNI CGCG 1 cut(s) 975
BspLI GGNNCC 4 cut(s) 6, 141, 318, 459
BspMAI CTGCAG 1 cut(s) 490
BspMI ACCTGC 1 cut(s) 573
BspPI GGATC 4 cut(s) 92, 452, 465, 816
BspT107I GGYRCC 1 cut(s) 4
BsrFI RCCGGY 1 cut(s) 769
BsrI ACTGG 2 cut(s) 931, 970
BssAI RCCGGY 1 cut(s) 769
BssECI CCNNGG 3 cut(s) 65, 143, 635
BssMI GATC 6 cut(s) 84, 225, 457, 589, 808, 883
BssSI CACGAG 1 cut(s) 257
BssT1I CCWWGG 1 cut(s) 65
Bst2BI CACGAG 1 cut(s) 257
Bst2UI CCWGG 3 cut(s) 103, 144, 636
Bst4CI ACNGT 7 cut(s) 377, 408, 678, 736, 868, 877, 1017
Bst6I CTCTTC 2 cut(s) 258, 825
BstAPI GCANNNNNTGC 1 cut(s) 579
BstDEI CTNAG 1 cut(s) 126
BstDSI CCRYGG 1 cut(s) 65
BstF5I GGATG 2 cut(s) 525, 575
BstFNI CGCG 1 cut(s) 975
BstHHI GCGC 2 cut(s) 554, 975
BstKTI GATC 6 cut(s) 87, 228, 460, 592, 811, 886
BstMAI GTCTC 2 cut(s) 124, 254
BstMBI GATC 6 cut(s) 84, 225, 457, 589, 808, 883
BstMWI GCNNNNNNNGC 2 cut(s) 579, 631
BstNI CCWGG 3 cut(s) 103, 144, 636
BstNSI RCATGY 1 cut(s) 452
BstPAI GACNNNNGTC 1 cut(s) 421
BstSCI CCNGG 4 cut(s) 101, 142, 634, 834
BstSFI CTRYAG 1 cut(s) 486
BstUI CGCG 1 cut(s) 975
BstX2I RGATCY 1 cut(s) 457
BstYI RGATCY 1 cut(s) 457
Bsu15I ATCGAT 1 cut(s) 228
BsuRI GGCC 1 cut(s) 634
BsuTUI ATCGAT 1 cut(s) 228
BtgI CCRYGG 1 cut(s) 65
BtsCI GGATG 2 cut(s) 525, 575
BtsI GCAGTG 2 cut(s) 655, 688
BtsIMutI CAGTG 8 cut(s) 382, 573, 655, 688, 741, 795, 893, 963
BveI ACCTGC 1 cut(s) 573
CfoI GCGC 2 cut(s) 554, 975
Cfr10I RCCGGY 1 cut(s) 769
ClaI ATCGAT 1 cut(s) 228
Csp6I GTAC 6 cut(s) 409, 452, 640, 672, 864, 1009
CspCI CAANNNNNGTGG 2 cut(s) 294, 329
CviAII CATG 4 cut(s) 66, 449, 533, 827
CviQI GTAC 6 cut(s) 409, 452, 640, 672, 864, 1009
DdeI CTNAG 1 cut(s) 126
DpnI GATC 6 cut(s) 86, 227, 459, 591, 810, 885
DpnII GATC 6 cut(s) 84, 225, 457, 589, 808, 883
Eam1104I CTCTTC 2 cut(s) 258, 825
EarI CTCTTC 2 cut(s) 258, 825
Eco130I CCWWGG 1 cut(s) 65
Eco57I CTGAAG 1 cut(s) 240
Eco88I CYCGRG 2 cut(s) 419, 546
EcoRII CCWGG 3 cut(s) 101, 142, 634
EcoT14I CCWWGG 1 cut(s) 65
ErhI CCWWGG 1 cut(s) 65
FaeI CATG 4 cut(s) 69, 452, 536, 830
FatI CATG 4 cut(s) 65, 448, 532, 826
FbaI TGATCA 1 cut(s) 883
Fnu4HI GCNGC 1 cut(s) 976
FokI GGATG 2 cut(s) 532, 582
Fsp4HI GCNGC 1 cut(s) 976
FspBI CTAG 2 cut(s) 44, 108
GlaI GCGC 2 cut(s) 553, 974
GluI GCNGC 1 cut(s) 976
GsaI CCCAGC 1 cut(s) 53
HaeIII GGCC 1 cut(s) 634
HapII CCGG 3 cut(s) 455, 770, 835
HhaI GCGC 2 cut(s) 554, 975
Hin1II CATG 4 cut(s) 69, 452, 536, 830
Hin6I GCGC 2 cut(s) 552, 973
HinP1I GCGC 2 cut(s) 552, 973
HindIII AAGCTT 1 cut(s) 128
HinfI GANTC 5 cut(s) 241, 350, 417, 493, 758
HpaII CCGG 3 cut(s) 455, 770, 835
Hpy166II GTNNAC 3 cut(s) 178, 642, 674
Hpy188I TCNGA 6 cut(s) 73, 84, 287, 355, 427, 757
Hpy188III TCNNGA 4 cut(s) 257, 367, 709, 775
Hpy8I GTNNAC 3 cut(s) 178, 642, 674
HpyAV CCTTC 3 cut(s) 18, 230, 429
HpyCH4III ACNGT 7 cut(s) 377, 408, 678, 736, 868, 877, 1017
HpyCH4IV ACGT 1 cut(s) 174
HpyCH4V TGCA 8 cut(s) 155, 271, 488, 573, 582, 655, 681, 861
HpyF10VI GCNNNNNNNGC 2 cut(s) 579, 631
HpyF3I CTNAG 1 cut(s) 126
HpySE526I ACGT 1 cut(s) 174
Hsp92II CATG 4 cut(s) 69, 452, 536, 830
HspAI GCGC 2 cut(s) 552, 973
Ksp22I TGATCA 1 cut(s) 883
Kzo9I GATC 6 cut(s) 84, 225, 457, 589, 808, 883
LweI GCATC 5 cut(s) 64, 280, 510, 560, 781
MaeI CTAG 2 cut(s) 44, 108
MaeII ACGT 1 cut(s) 174
MaeIII GTNAC 2 cut(s) 601, 913
MalI GATC 6 cut(s) 86, 227, 459, 591, 810, 885
MboI GATC 6 cut(s) 84, 225, 457, 589, 808, 883
MboII GAAGA 5 cut(s) 245, 245, 300, 807, 812
MflI RGATCY 1 cut(s) 457
MlyI GAGTC 1 cut(s) 411
MmeI TCCRAC 1 cut(s) 117
MnlI CCTC 7 cut(s) 261, 502, 550, 611, 624, 728, 988
MseI TTAA 2 cut(s) 56, 96
MspI CCGG 3 cut(s) 455, 770, 835
MspR9I CCNGG 4 cut(s) 103, 144, 636, 836
Mva1269I GAATGC 1 cut(s) 584
MvaI CCWGG 3 cut(s) 103, 144, 636
MvnI CGCG 1 cut(s) 975
MwoI GCNNNNNNNGC 2 cut(s) 579, 631
NciI CCSGG 1 cut(s) 836
NcoI CCATGG 1 cut(s) 65
NdeII GATC 6 cut(s) 84, 225, 457, 589, 808, 883
NlaIII CATG 4 cut(s) 69, 452, 536, 830
NlaIV GGNNCC 4 cut(s) 6, 141, 318, 459
NspI RCATGY 1 cut(s) 452
PaqCI CACCTGC 1 cut(s) 573
PciI ACATGT 1 cut(s) 448
PctI GAATGC 1 cut(s) 584
PfeI GAWTC 4 cut(s) 241, 350, 493, 758
PflFI GACNNNGTC 1 cut(s) 618
PflMI CCANNNNNTGG 1 cut(s) 929
PkrI GCNGC 1 cut(s) 977
PleI GAGTC 1 cut(s) 411
PpsI GAGTC 1 cut(s) 411
PscI ACATGT 1 cut(s) 448
PshAI GACNNNNGTC 1 cut(s) 421
Psp1406I AACGTT 1 cut(s) 174
Psp6I CCWGG 3 cut(s) 101, 142, 634
PspFI CCCAGC 1 cut(s) 49
PspGI CCWGG 3 cut(s) 101, 142, 634
PspN4I GGNNCC 4 cut(s) 6, 141, 318, 459
PstI CTGCAG 1 cut(s) 490
PsuI RGATCY 1 cut(s) 457
PsyI GACNNNGTC 1 cut(s) 618
RsaI GTAC 6 cut(s) 410, 453, 641, 673, 865, 1010
RsaNI GTAC 6 cut(s) 409, 452, 640, 672, 864, 1009
SaqAI TTAA 2 cut(s) 56, 96
SatI GCNGC 1 cut(s) 976
Sau3AI GATC 6 cut(s) 84, 225, 457, 589, 808, 883
ScaI AGTACT 2 cut(s) 410, 865
SchI GAGTC 1 cut(s) 411
ScrFI CCNGG 4 cut(s) 103, 144, 636, 836
SetI ASST 9 cut(s) 10, 40, 132, 177, 193, 566, 587, 622, 999
SfaNI GCATC 5 cut(s) 64, 280, 510, 560, 781
SfcI CTRYAG 1 cut(s) 486
SmlI CTYRAG 1 cut(s) 724
SmoI CTYRAG 1 cut(s) 724
SsiI CCGC 1 cut(s) 975
SspMI CTAG 2 cut(s) 44, 108
StyD4I CCNGG 4 cut(s) 101, 142, 634, 834
StyI CCWWGG 1 cut(s) 65
TaaI ACNGT 7 cut(s) 377, 408, 678, 736, 868, 877, 1017
TaiI ACGT 1 cut(s) 177
TaqI TCGA 3 cut(s) 228, 336, 840
TatI WGTACW 3 cut(s) 408, 863, 1008
TauI GCSGC 1 cut(s) 978
TfiI GAWTC 4 cut(s) 241, 350, 493, 758
Tru1I TTAA 2 cut(s) 56, 96
Tru9I TTAA 2 cut(s) 56, 96
TscAI CASTG 8 cut(s) 382, 580, 662, 688, 741, 802, 893, 970
TspDTI ATGAA 2 cut(s) 246, 521
TspGWI ACGGA 1 cut(s) 821
TspRI CASTG 8 cut(s) 382, 580, 662, 688, 741, 802, 893, 970
Tth111I GACNNNGTC 1 cut(s) 618
Van91I CCANNNNNTGG 1 cut(s) 929
XceI RCATGY 1 cut(s) 452
XcmI CCANNNNNNNNNTGG 1 cut(s) 962
XspI CTAG 2 cut(s) 44, 108
ZrmI AGTACT 2 cut(s) 410, 865
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.