RLG00000004693

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0001567
Physical Location & Seq
Forward (+)
61489453 .. 61492695
3243 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000004693

Sequence Viewer

Length: 1092 bp
ATGAAAATTTTGACTCTAGCTATCATCGTACCCACTTCTCTCTTGCTCTGGCTGAGGCACCTGGAAAGAAAATGGCACCTTCTTGTCATAAGTTTGGTACTTCTGTTAGCTGTGCTAGTGCTGGGGTTAAGCTTACCATGTTCAAATGCTATTCAGATGAATAAGGTTAAGACCAGGACTAGCGTTTATGTCTCCCCTAAGTTTGTGTTGGAACCAGGTTCAGTTGCAGACAAGTATTTCTATAACATTCACTTTCCAAGAGGTCATATTGCTATGAAGTATTTCAATGCTGAAGTGATTGATGAACAAGGGAATCCTATTCCTCTTCATGAGACTTATCTGCATCATTGGGTTATTGAAAGATATTACGCCCAGGCAAGTTATGTGGAACCAGAGCTGAATGGTTTCGAGGATATTAAAGATCCGGATTTTAAGATTGTGAGAAATAGTGGATTGTGCCAGAATAATGTTCTTGGTCAGTACTATGGACTCGGTTCAGAAACTAGAAAGACAGATACACATGTACCGGATCCTTTTGGAATAGAGATTGGCAACCCTGCAGAGATTCCTGCTGGATATGAGGAGAGCTGGATGCTCAATGTTCATGCTATTGATACTCGGGGCGCAGAGGATAGGTTGGGATGCACTGAATGCAGGTGTGATCTGTATAATGTAACAAAAGATAGATGGGGCCAGCCGTTGAGGCCAGGGTACACAGGGGGTTTGCACTGCTGTTATGATGGTACAAAGTGTAGCGTAAAACAAGGCTACAATGGTGTCAAGAGAAGCCTCTACTTGAGATACACTGTGAAGTGGGTTGATTGGTCTGATTCTATTGTGCCTGTCAAGATTTATATCTTTGATGTCACTGATAGAACGGATCATTCAGGAGGACCGTCTCTTCAACATGATTGCCAGATCGAATATGATGTTGAGCCTTGCAGTACTGTTGATATGGTAAATGATCAATGCTTTGACAATCAAAGGGCAATGATTACTATGCCACTGGGGGGCGCGGCTCAACTCTATATGGAGAGGACGGACGGGTTCTATGTTCATCAATACCAATATATGGGCAAAGCGAGGAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SURNod19

Protein Analysis

364

Amino Acids

41.48

Weight (kDa)

6.11

Isoelectric Point (pI)

39.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SURNod19 PF07712 57 - 339 4.2e-131 Stress up-regulated Nod 19
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 645
Acc36I ACCTGC 1 cut(s) 645
AccB1I GGYRCC 2 cut(s) 57, 75
AccB7I CCANNNNNTGG 1 cut(s) 1072
AccII CGCG 1 cut(s) 1016
AccIII TCCGGA 1 cut(s) 424
AciI CCGC 1 cut(s) 1016
AclWI GGATC 4 cut(s) 416, 524, 537, 888
AcsI RAATTY 1 cut(s) 6
AcuI CTGAAG 1 cut(s) 312
AfaI GTAC 7 cut(s) 30, 99, 482, 525, 713, 745, 946
AfiI CCNNNNNNNGG 2 cut(s) 1010, 1072
AflIII ACRYGT 1 cut(s) 520
AgsI TTSAA 4 cut(s) 144, 286, 359, 905
AjnI CCWGG 5 cut(s) 60, 173, 214, 372, 706
AluBI AGCT 5 cut(s) 20, 110, 132, 397, 588
AluI AGCT 5 cut(s) 20, 110, 132, 397, 588
Alw26I GTCTC 3 cut(s) 196, 326, 903
AlwI GGATC 4 cut(s) 416, 524, 537, 888
Ama87I CYCGRG 1 cut(s) 618
Aor13HI TCCGGA 1 cut(s) 424
AoxI GGCC 2 cut(s) 691, 704
ApoI RAATTY 1 cut(s) 6
Asp700I GAANNNNTTC 2 cut(s) 281, 404
AspLEI GCGC 2 cut(s) 626, 1016
AspS9I GGNCC 2 cut(s) 691, 893
AvaI CYCGRG 1 cut(s) 618
AvaII GGWCC 1 cut(s) 893
BaeI ACNNNNGTAYC 6 cut(s) 89, 122, 507, 507, 540, 540
BamHI GGATCC 1 cut(s) 529
BanI GGYRCC 2 cut(s) 57, 75
BbvCI CCTCAGC 1 cut(s) 53
BccI CCATC 2 cut(s) 681, 734
BceAI ACGGC 1 cut(s) 682
BciT130I CCWGG 5 cut(s) 62, 175, 216, 374, 708
BclI TGATCA 1 cut(s) 964
BcoDI GTCTC 3 cut(s) 196, 326, 903
BfaI CTAG 4 cut(s) 17, 116, 180, 504
BfmI CTRYAG 1 cut(s) 558
BfuAI ACCTGC 1 cut(s) 645
BglI GCCNNNNNGGC 1 cut(s) 703
BisI GCNGC 1 cut(s) 1017
BlsI GCNGC 1 cut(s) 1018
BmcAI AGTACT 2 cut(s) 482, 946
Bme1390I CCNGG 5 cut(s) 62, 175, 216, 374, 708
Bme18I GGWCC 1 cut(s) 893
BmeT110I CYCGRG 1 cut(s) 618
BmgT120I GGNCC 2 cut(s) 691, 893
BmiI GGNNCC 6 cut(s) 59, 77, 213, 390, 531, 692
BmrFI CCNGG 5 cut(s) 62, 175, 216, 374, 708
BmrI ACTGGG 1 cut(s) 1016
BmsI GCATC 3 cut(s) 352, 582, 632
BmuI ACTGGG 1 cut(s) 1016
Bpu10I CCTNAGC 1 cut(s) 53
BpuEI CTTGAG 1 cut(s) 817
BsaBI GATNNNNATC 1 cut(s) 854
BsaJI CCNNGG 2 cut(s) 372, 707
BsaWI WCCGGW 2 cut(s) 424, 526
Bsc4I CCNNNNNNNGG 2 cut(s) 1010, 1072
Bse1I ACTGG 1 cut(s) 1011
Bse3DI GCAATG 1 cut(s) 996
Bse8I GATNNNNATC 1 cut(s) 854
BseAI TCCGGA 1 cut(s) 424
BseBI CCWGG 5 cut(s) 62, 175, 216, 374, 708
BseDI CCNNGG 2 cut(s) 372, 707
BseGI GGATG 2 cut(s) 597, 647
BseJI GATNNNNATC 1 cut(s) 854
BseLI CCNNNNNNNGG 2 cut(s) 1010, 1072
BseMI GCAATG 1 cut(s) 996
BseMII CTCAG 1 cut(s) 44
BseNI ACTGG 1 cut(s) 1011
BseRI GAGGAG 1 cut(s) 596
BseYI CCCAGC 1 cut(s) 121
Bsh1236I CGCG 1 cut(s) 1016
BshFI GGCC 2 cut(s) 693, 706
BshNI GGYRCC 2 cut(s) 57, 75
BsiHKCI CYCGRG 1 cut(s) 618
BsiSI CCGG 2 cut(s) 425, 527
BslI CCNNNNNNNGG 2 cut(s) 1010, 1072
BsmAI GTCTC 3 cut(s) 196, 326, 903
BsmBI CGTCTC 1 cut(s) 903
BsmI GAATGC 1 cut(s) 656
BsnI GGCC 2 cut(s) 693, 706
BsoBI CYCGRG 1 cut(s) 618
Bsp13I TCCGGA 1 cut(s) 424
Bsp143I GATC 6 cut(s) 421, 529, 661, 880, 918, 964
BspACI CCGC 1 cut(s) 1016
BspANI GGCC 2 cut(s) 693, 706
BspCNI CTCAG 1 cut(s) 45
BspEI TCCGGA 1 cut(s) 424
BspFNI CGCG 1 cut(s) 1016
BspHI TCATGA 1 cut(s) 328
BspLI GGNNCC 6 cut(s) 59, 77, 213, 390, 531, 692
BspMAI CTGCAG 1 cut(s) 562
BspMI ACCTGC 1 cut(s) 645
BspPI GGATC 4 cut(s) 416, 524, 537, 888
BspT107I GGYRCC 2 cut(s) 57, 75
BsrDI GCAATG 1 cut(s) 996
BsrI ACTGG 1 cut(s) 1011
BssECI CCNNGG 2 cut(s) 372, 707
BssMI GATC 6 cut(s) 421, 529, 661, 880, 918, 964
Bst2UI CCWGG 5 cut(s) 62, 175, 216, 374, 708
Bst4CI ACNGT 3 cut(s) 808, 897, 949
Bst6I CTCTTC 2 cut(s) 330, 906
BstAPI GCANNNNNTGC 1 cut(s) 651
BstC8I GCNNGC 1 cut(s) 695
BstDEI CTNAG 2 cut(s) 53, 198
BstF5I GGATG 2 cut(s) 597, 647
BstFNI CGCG 1 cut(s) 1016
BstHHI GCGC 2 cut(s) 626, 1016
BstKTI GATC 6 cut(s) 424, 532, 664, 883, 921, 967
BstMAI GTCTC 3 cut(s) 196, 326, 903
BstMBI GATC 6 cut(s) 421, 529, 661, 880, 918, 964
BstMWI GCNNNNNNNGC 2 cut(s) 651, 703
BstNI CCWGG 5 cut(s) 62, 175, 216, 374, 708
BstNSI RCATGY 1 cut(s) 524
BstSCI CCNGG 5 cut(s) 60, 173, 214, 372, 706
BstSFI CTRYAG 1 cut(s) 558
BstUI CGCG 1 cut(s) 1016
BstX2I RGATCY 2 cut(s) 421, 529
BstYI RGATCY 2 cut(s) 421, 529
BsuRI GGCC 2 cut(s) 693, 706
BtsCI GGATG 2 cut(s) 597, 647
BtsI GCAGTG 1 cut(s) 727
BtsIMutI CAGTG 5 cut(s) 645, 727, 804, 867, 1004
BveI ACCTGC 1 cut(s) 645
Cac8I GCNNGC 1 cut(s) 695
CciI TCATGA 1 cut(s) 328
CfoI GCGC 2 cut(s) 626, 1016
Cfr13I GGNCC 2 cut(s) 691, 893
CsiI ACCWGGT 1 cut(s) 214
Csp6I GTAC 7 cut(s) 29, 98, 481, 524, 712, 744, 945
CspCI CAANNNNNGTGG 2 cut(s) 366, 401
CviAII CATG 5 cut(s) 138, 329, 521, 605, 908
CviQI GTAC 7 cut(s) 29, 98, 481, 524, 712, 744, 945
DdeI CTNAG 2 cut(s) 53, 198
DpnI GATC 6 cut(s) 423, 531, 663, 882, 920, 966
DpnII GATC 6 cut(s) 421, 529, 661, 880, 918, 964
Eam1104I CTCTTC 2 cut(s) 330, 906
EarI CTCTTC 2 cut(s) 330, 906
Eco47I GGWCC 1 cut(s) 893
Eco57I CTGAAG 1 cut(s) 312
Eco88I CYCGRG 1 cut(s) 618
EcoRII CCWGG 5 cut(s) 60, 173, 214, 372, 706
Esp3I CGTCTC 1 cut(s) 903
FaeI CATG 5 cut(s) 141, 332, 524, 608, 911
FatI CATG 5 cut(s) 137, 328, 520, 604, 907
FbaI TGATCA 1 cut(s) 964
Fnu4HI GCNGC 1 cut(s) 1017
FokI GGATG 2 cut(s) 604, 654
Fsp4HI GCNGC 1 cut(s) 1017
FspBI CTAG 4 cut(s) 17, 116, 180, 504
GlaI GCGC 2 cut(s) 625, 1015
GluI GCNGC 1 cut(s) 1017
GsaI CCCAGC 1 cut(s) 125
HaeIII GGCC 2 cut(s) 693, 706
HapII CCGG 2 cut(s) 425, 527
HhaI GCGC 2 cut(s) 626, 1016
Hin1II CATG 5 cut(s) 141, 332, 524, 608, 911
Hin6I GCGC 2 cut(s) 624, 1014
HinP1I GCGC 2 cut(s) 624, 1014
HindIII AAGCTT 1 cut(s) 130
HinfI GANTC 5 cut(s) 13, 313, 489, 565, 830
HpaII CCGG 2 cut(s) 425, 527
Hpy166II GTNNAC 1 cut(s) 714
Hpy188I TCNGA 3 cut(s) 156, 499, 829
Hpy188III TCNNGA 5 cut(s) 329, 425, 781, 847, 888
Hpy8I GTNNAC 1 cut(s) 714
HpyAV CCTTC 1 cut(s) 89
HpyCH4III ACNGT 3 cut(s) 808, 897, 949
HpyCH4V TGCA 7 cut(s) 227, 343, 560, 645, 654, 727, 942
HpyF10VI GCNNNNNNNGC 2 cut(s) 651, 703
HpyF3I CTNAG 2 cut(s) 53, 198
Hsp92II CATG 5 cut(s) 141, 332, 524, 608, 911
HspAI GCGC 2 cut(s) 624, 1014
Kpn2I TCCGGA 1 cut(s) 424
Ksp22I TGATCA 1 cut(s) 964
Kzo9I GATC 6 cut(s) 421, 529, 661, 880, 918, 964
LweI GCATC 3 cut(s) 352, 582, 632
MabI ACCWGGT 1 cut(s) 214
MaeI CTAG 4 cut(s) 17, 116, 180, 504
MaeIII GTNAC 2 cut(s) 673, 865
MalI GATC 6 cut(s) 423, 531, 663, 882, 920, 966
MboI GATC 6 cut(s) 421, 529, 661, 880, 918, 964
MboII GAAGA 2 cut(s) 317, 893
MflI RGATCY 2 cut(s) 421, 529
MluCI AATT 1 cut(s) 6
MlyI GAGTC 2 cut(s) 7, 483
MmeI TCCRAC 1 cut(s) 189
MroI TCCGGA 1 cut(s) 424
MroXI GAANNNNTTC 2 cut(s) 281, 404
MseI TTAA 4 cut(s) 128, 168, 417, 432
MspI CCGG 2 cut(s) 425, 527
MspR9I CCNGG 5 cut(s) 62, 175, 216, 374, 708
Mva1269I GAATGC 1 cut(s) 656
MvaI CCWGG 5 cut(s) 62, 175, 216, 374, 708
MvnI CGCG 1 cut(s) 1016
MwoI GCNNNNNNNGC 2 cut(s) 651, 703
NdeII GATC 6 cut(s) 421, 529, 661, 880, 918, 964
NlaIII CATG 5 cut(s) 141, 332, 524, 608, 911
NlaIV GGNNCC 6 cut(s) 59, 77, 213, 390, 531, 692
NmuCI GTSAC 1 cut(s) 865
NspI RCATGY 1 cut(s) 524
PagI TCATGA 1 cut(s) 328
PaqCI CACCTGC 1 cut(s) 645
PciI ACATGT 1 cut(s) 520
PctI GAATGC 1 cut(s) 656
PdmI GAANNNNTTC 2 cut(s) 281, 404
PfeI GAWTC 3 cut(s) 313, 565, 830
PflMI CCANNNNNTGG 1 cut(s) 1072
PkrI GCNGC 1 cut(s) 1018
PleI GAGTC 2 cut(s) 7, 483
PpsI GAGTC 2 cut(s) 7, 483
PscI ACATGT 1 cut(s) 520
Psp6I CCWGG 5 cut(s) 60, 173, 214, 372, 706
PspFI CCCAGC 1 cut(s) 121
PspGI CCWGG 5 cut(s) 60, 173, 214, 372, 706
PspN4I GGNNCC 6 cut(s) 59, 77, 213, 390, 531, 692
PspPI GGNCC 2 cut(s) 691, 893
PstI CTGCAG 1 cut(s) 562
PsuI RGATCY 2 cut(s) 421, 529
RsaI GTAC 7 cut(s) 30, 99, 482, 525, 713, 745, 946
RsaNI GTAC 7 cut(s) 29, 98, 481, 524, 712, 744, 945
SaqAI TTAA 4 cut(s) 128, 168, 417, 432
SatI GCNGC 1 cut(s) 1017
Sau3AI GATC 6 cut(s) 421, 529, 661, 880, 918, 964
Sau96I GGNCC 2 cut(s) 691, 893
ScaI AGTACT 2 cut(s) 482, 946
SchI GAGTC 2 cut(s) 7, 483
ScrFI CCNGG 5 cut(s) 62, 175, 216, 374, 708
SexAI ACCWGGT 1 cut(s) 214
SfaNI GCATC 3 cut(s) 352, 582, 632
SfcI CTRYAG 1 cut(s) 558
SinI GGWCC 1 cut(s) 893
SmlI CTYRAG 1 cut(s) 796
SmoI CTYRAG 1 cut(s) 796
Sse9I AATT 1 cut(s) 6
SsiI CCGC 1 cut(s) 1016
SspMI CTAG 4 cut(s) 17, 116, 180, 504
StyD4I CCNGG 5 cut(s) 60, 173, 214, 372, 706
TaaI ACNGT 3 cut(s) 808, 897, 949
TaqI TCGA 2 cut(s) 408, 921
TasI AATT 1 cut(s) 6
TatI WGTACW 2 cut(s) 480, 944
TauI GCSGC 1 cut(s) 1019
TfiI GAWTC 3 cut(s) 313, 565, 830
Tru1I TTAA 4 cut(s) 128, 168, 417, 432
Tru9I TTAA 4 cut(s) 128, 168, 417, 432
TscAI CASTG 5 cut(s) 652, 734, 811, 874, 1011
TseFI GTSAC 1 cut(s) 865
Tsp45I GTSAC 1 cut(s) 865
TspDTI ATGAA 7 cut(s) 17, 173, 290, 317, 318, 593, 1046
TspGWI ACGGA 2 cut(s) 893, 1055
TspRI CASTG 5 cut(s) 652, 734, 811, 874, 1011
Van91I CCANNNNNTGG 1 cut(s) 1072
VpaK11BI GGWCC 1 cut(s) 893
XapI RAATTY 1 cut(s) 6
XceI RCATGY 1 cut(s) 524
XmnI GAANNNNTTC 2 cut(s) 281, 404
XspI CTAG 4 cut(s) 17, 116, 180, 504
ZrmI AGTACT 2 cut(s) 482, 946
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.