Rmu_sc0016427.1_g000001

Encoded by

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0016427.1
Physical Location & Seq
Reverse (-)
1396 .. 4160
2765 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0016427.1_g000001.1.cds

Sequence Viewer

Length: 1335 bp
atgaaaattttgactctagctatcatcgtacccactcctctcttgctctggctgaggcacctggaaagaaaatggcacctccttgtcataagtttggtacttttgttagctgtgctagtgctggggttaagcctaccatctccagatgccattcggatcaataaggtcaagaccaggactagtgtttatgtctcccctaagtttgtgttggaaccagggtcagttgcagacaagtatttctataacattcacttcccaagaggtcatattgctatgaagtatttcaatgctgaagtgatcgatgaagaagggaatcctattcctcttcatgagacttatctgcatcattgggttattgaaagatattacgcccaggcaagttatgtggaaccggagctgagtggtttcgaggatattaaagatccggattttaagattgtgagaaatagtggattgtgccagaataatgttcttggtcagtactatggactcgggtcagaaactagaaagacagatacacatgtaccggatccttttggaatagagattggcaaccctgcagagattcctgctggatatgaggagagatggatgctcaatgttcatgctattgatactcggggcgcagaggataggttgggatgcactgaatgcaggtgtgatctgtataatgtaacaaaagatggatggggccagccgttgaggccagggtacacagggggtttgcactgctgttatgatggtacgaagtgcagcgtaaaacaaggctacaatggtgtcaagagaagcctctacttgagatacactgtgaagtgggttgattggtctgattctattgtgcctgtcaagatttatatctttgatgtcactgatagaacggatcattcaggaggaccgtctcttcaacatgattgccggaacgaatataatgttgagccttgcagtgttgttgatttggtaaatgatcaatgctttgacaatcaaagggcaatgattactatgccaactggtggttatatcgtctatggtgtagcccatcagcacactggggggcgcggctcaactctatatggagaggacggacgggttctatgttcatcagtaccaatatatgggcaaagcgaggaagtaggagacgaggctggttacattgtaggaatgtcaacttgctatccacatccgggctctgtcaaaataaaggatggggagactctggttgtgggatctaattacagcagctcgcggccgcacatcggagtcatgggcctcttctacattttggttgcagagcacctgccaaagtcctccttgcttagcttggactcttcactttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

444

Amino Acids

49.63

Weight (kDa)

5.85

Isoelectric Point (pI)

39.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 645, 1302
Acc36I ACCTGC 2 cut(s) 645, 1302
AccB1I GGYRCC 2 cut(s) 57, 75
AccB7I CCANNNNNTGG 2 cut(s) 1010, 1112
AccII CGCG 2 cut(s) 1056, 1243
AccIII TCCGGA 1 cut(s) 424
AciI CCGC 3 cut(s) 1056, 1243, 1247
AclWI GGATC 6 cut(s) 164, 416, 524, 537, 888, 1231
AcoI YGGCCR 1 cut(s) 1244
AcsI RAATTY 1 cut(s) 6
AcuI CTGAAG 1 cut(s) 312
AfaI GTAC 7 cut(s) 30, 99, 482, 525, 713, 745, 1104
AfiI CCNNNNNNNGG 4 cut(s) 1010, 1112, 1181, 1253
AflIII ACRYGT 1 cut(s) 520
AgsI TTSAA 3 cut(s) 286, 359, 905
AhlI ACTAGT 1 cut(s) 179
AjnI CCWGG 5 cut(s) 60, 173, 214, 372, 706
AluBI AGCT 5 cut(s) 20, 110, 397, 1239, 1317
AluI AGCT 5 cut(s) 20, 110, 397, 1239, 1317
Alw21I GWGCWC 1 cut(s) 1293
Alw26I GTCTC 5 cut(s) 196, 326, 903, 1128, 1202
AlwI GGATC 6 cut(s) 164, 416, 524, 537, 888, 1231
Ama87I CYCGRG 2 cut(s) 491, 618
Aor13HI TCCGGA 1 cut(s) 424
AoxI GGCC 4 cut(s) 691, 704, 1244, 1264
ApeKI GCWGC 2 cut(s) 753, 1236
ApoI RAATTY 1 cut(s) 6
Asp700I GAANNNNTTC 1 cut(s) 281
AspLEI GCGC 2 cut(s) 626, 1056
AspS9I GGNCC 3 cut(s) 691, 893, 1264
AsuC2I CCSGG 1 cut(s) 1182
AvaI CYCGRG 2 cut(s) 491, 618
AvaII GGWCC 1 cut(s) 893
BaeI ACNNNNGTAYC 6 cut(s) 89, 122, 507, 507, 540, 540
BamHI GGATCC 1 cut(s) 529
BanI GGYRCC 2 cut(s) 57, 75
BanII GRGCYC 1 cut(s) 1187
Bbv12I GWGCWC 1 cut(s) 1293
BbvCI CCTCAGC 1 cut(s) 53
BbvI GCAGC 2 cut(s) 765, 1248
BccI CCATC 7 cut(s) 145, 582, 677, 681, 734, 1044, 1196
BceAI ACGGC 1 cut(s) 682
BciT130I CCWGG 5 cut(s) 62, 175, 216, 374, 708
BclI TGATCA 1 cut(s) 964
BcnI CCSGG 1 cut(s) 1182
BcoDI GTCTC 5 cut(s) 196, 326, 903, 1128, 1202
BcuI ACTAGT 1 cut(s) 179
BfaI CTAG 4 cut(s) 17, 116, 180, 504
BfmI CTRYAG 1 cut(s) 558
BfuAI ACCTGC 2 cut(s) 645, 1302
BglI GCCNNNNNGGC 1 cut(s) 703
BisI GCNGC 5 cut(s) 754, 1057, 1237, 1244, 1247
BlpI GCTNAGC 1 cut(s) 1313
BlsI GCNGC 5 cut(s) 755, 1058, 1238, 1245, 1248
BmcAI AGTACT 1 cut(s) 482
Bme1390I CCNGG 6 cut(s) 62, 175, 216, 374, 708, 1182
Bme18I GGWCC 1 cut(s) 893
BmeT110I CYCGRG 2 cut(s) 491, 618
BmgT120I GGNCC 3 cut(s) 691, 893, 1264
BmiI GGNNCC 6 cut(s) 59, 77, 213, 390, 531, 692
BmrFI CCNGG 6 cut(s) 62, 175, 216, 374, 708, 1182
BmrI ACTGGG 1 cut(s) 1056
BmsI GCATC 4 cut(s) 136, 352, 582, 632
BmuI ACTGGG 1 cut(s) 1056
BoxI GACNNNNGTC 1 cut(s) 493
BpmI CTGGAG 1 cut(s) 126
Bpu10I CCTNAGC 1 cut(s) 53
Bpu1102I GCTNAGC 1 cut(s) 1313
BpuEI CTTGAG 1 cut(s) 817
BpuMI CCSGG 1 cut(s) 1182
Bsa29I ATCGAT 1 cut(s) 300
BsaBI GATNNNNATC 1 cut(s) 854
BsaJI CCNNGG 3 cut(s) 215, 372, 707
BsaWI WCCGGW 3 cut(s) 391, 424, 526
Bsc4I CCNNNNNNNGG 4 cut(s) 1010, 1112, 1181, 1253
Bse1I ACTGG 2 cut(s) 1012, 1051
Bse3DI GCAATG 1 cut(s) 996
Bse8I GATNNNNATC 1 cut(s) 854
BseAI TCCGGA 1 cut(s) 424
BseBI CCWGG 5 cut(s) 62, 175, 216, 374, 708
BseCI ATCGAT 1 cut(s) 300
BseDI CCNNGG 3 cut(s) 215, 372, 707
BseGI GGATG 5 cut(s) 597, 647, 692, 1177, 1207
BseJI GATNNNNATC 1 cut(s) 854
BseLI CCNNNNNNNGG 4 cut(s) 1010, 1112, 1181, 1253
BseMI GCAATG 1 cut(s) 996
BseMII CTCAG 2 cut(s) 44, 389
BseNI ACTGG 2 cut(s) 1012, 1051
BseRI GAGGAG 2 cut(s) 27, 596
BseX3I CGGCCG 1 cut(s) 1244
BseXI GCAGC 2 cut(s) 765, 1248
BseYI CCCAGC 1 cut(s) 121
BsgI GTGCAG 1 cut(s) 772
Bsh1236I CGCG 2 cut(s) 1056, 1243
Bsh1285I CGRYCG 1 cut(s) 1247
BshFI GGCC 4 cut(s) 693, 706, 1246, 1266
BshNI GGYRCC 2 cut(s) 57, 75
BshVI ATCGAT 1 cut(s) 300
BsiEI CGRYCG 1 cut(s) 1247
BsiHKAI GWGCWC 1 cut(s) 1293
BsiHKCI CYCGRG 2 cut(s) 491, 618
BsiSI CCGG 5 cut(s) 392, 425, 527, 916, 1181
BslI CCNNNNNNNGG 4 cut(s) 1010, 1112, 1181, 1253
BsmAI GTCTC 5 cut(s) 196, 326, 903, 1128, 1202
BsmBI CGTCTC 2 cut(s) 903, 1128
BsmI GAATGC 1 cut(s) 656
BsnI GGCC 4 cut(s) 693, 706, 1246, 1266
BsoBI CYCGRG 2 cut(s) 491, 618
Bsp1286I GDGCHC 2 cut(s) 1187, 1293
Bsp13I TCCGGA 1 cut(s) 424
Bsp143I GATC 8 cut(s) 156, 297, 421, 529, 661, 880, 964, 1223
Bsp1720I GCTNAGC 1 cut(s) 1313
BspACI CCGC 3 cut(s) 1056, 1243, 1247
BspANI GGCC 4 cut(s) 693, 706, 1246, 1266
BspCNI CTCAG 2 cut(s) 45, 390
BspDI ATCGAT 1 cut(s) 300
BspEI TCCGGA 1 cut(s) 424
BspFNI CGCG 2 cut(s) 1056, 1243
BspHI TCATGA 1 cut(s) 328
BspLI GGNNCC 6 cut(s) 59, 77, 213, 390, 531, 692
BspMAI CTGCAG 1 cut(s) 562
BspMI ACCTGC 2 cut(s) 645, 1302
BspPI GGATC 6 cut(s) 164, 416, 524, 537, 888, 1231
BspT107I GGYRCC 2 cut(s) 57, 75
BsrDI GCAATG 1 cut(s) 996
BsrI ACTGG 2 cut(s) 1012, 1051
BssECI CCNNGG 3 cut(s) 215, 372, 707
BssMI GATC 8 cut(s) 156, 297, 421, 529, 661, 880, 964, 1223
Bst2UI CCWGG 5 cut(s) 62, 175, 216, 374, 708
Bst4CI ACNGT 2 cut(s) 808, 897
Bst6I CTCTTC 4 cut(s) 330, 906, 1274, 1330
BstAPI GCANNNNNTGC 1 cut(s) 651
BstC8I GCNNGC 2 cut(s) 695, 1241
BstDEI CTNAG 4 cut(s) 53, 198, 398, 1313
BstF5I GGATG 5 cut(s) 597, 647, 692, 1177, 1207
BstFNI CGCG 2 cut(s) 1056, 1243
BstHHI GCGC 2 cut(s) 626, 1056
BstKTI GATC 8 cut(s) 159, 300, 424, 532, 664, 883, 967, 1226
BstMAI GTCTC 5 cut(s) 196, 326, 903, 1128, 1202
BstMBI GATC 8 cut(s) 156, 297, 421, 529, 661, 880, 964, 1223
BstMCI CGRYCG 1 cut(s) 1247
BstMWI GCNNNNNNNGC 2 cut(s) 651, 703
BstNI CCWGG 5 cut(s) 62, 175, 216, 374, 708
BstNSI RCATGY 1 cut(s) 524
BstPAI GACNNNNGTC 1 cut(s) 493
BstSCI CCNGG 6 cut(s) 60, 173, 214, 372, 706, 1180
BstSFI CTRYAG 1 cut(s) 558
BstUI CGCG 2 cut(s) 1056, 1243
BstV1I GCAGC 2 cut(s) 765, 1248
BstX2I RGATCY 3 cut(s) 421, 529, 1223
BstYI RGATCY 3 cut(s) 421, 529, 1223
BstZI CGGCCG 1 cut(s) 1244
Bsu15I ATCGAT 1 cut(s) 300
BsuRI GGCC 4 cut(s) 693, 706, 1246, 1266
BsuTUI ATCGAT 1 cut(s) 300
BtsCI GGATG 5 cut(s) 597, 647, 692, 1177, 1207
BtsI GCAGTG 2 cut(s) 727, 949
BtsIMutI CAGTG 6 cut(s) 645, 727, 804, 867, 949, 1044
BveI ACCTGC 2 cut(s) 645, 1302
Cac8I GCNNGC 2 cut(s) 695, 1241
CciI TCATGA 1 cut(s) 328
CciNI GCGGCCGC 1 cut(s) 1244
CfoI GCGC 2 cut(s) 626, 1056
Cfr13I GGNCC 3 cut(s) 691, 893, 1264
ClaI ATCGAT 1 cut(s) 300
Csp6I GTAC 7 cut(s) 29, 98, 481, 524, 712, 744, 1103
CspCI CAANNNNNGTGG 2 cut(s) 366, 401
CviAII CATG 5 cut(s) 329, 521, 605, 908, 1261
CviQI GTAC 7 cut(s) 29, 98, 481, 524, 712, 744, 1103
DdeI CTNAG 4 cut(s) 53, 198, 398, 1313
DpnI GATC 8 cut(s) 158, 299, 423, 531, 663, 882, 966, 1225
DpnII GATC 8 cut(s) 156, 297, 421, 529, 661, 880, 964, 1223
EaeI YGGCCR 1 cut(s) 1244
EagI CGGCCG 1 cut(s) 1244
Eam1104I CTCTTC 4 cut(s) 330, 906, 1274, 1330
EarI CTCTTC 4 cut(s) 330, 906, 1274, 1330
EclXI CGGCCG 1 cut(s) 1244
Eco24I GRGCYC 1 cut(s) 1187
Eco47I GGWCC 1 cut(s) 893
Eco52I CGGCCG 1 cut(s) 1244
Eco57I CTGAAG 1 cut(s) 312
Eco88I CYCGRG 2 cut(s) 491, 618
EcoRII CCWGG 5 cut(s) 60, 173, 214, 372, 706
EcoT38I GRGCYC 1 cut(s) 1187
Esp3I CGTCTC 2 cut(s) 903, 1128
FaeI CATG 5 cut(s) 332, 524, 608, 911, 1264
FalI AAGNNNNNCTT 2 cut(s) 1292, 1324
FatI CATG 5 cut(s) 328, 520, 604, 907, 1260
FbaI TGATCA 1 cut(s) 964
Fnu4HI GCNGC 5 cut(s) 754, 1057, 1237, 1244, 1247
FokI GGATG 5 cut(s) 604, 654, 699, 1164, 1214
FriOI GRGCYC 1 cut(s) 1187
Fsp4HI GCNGC 5 cut(s) 754, 1057, 1237, 1244, 1247
FspBI CTAG 4 cut(s) 17, 116, 180, 504
GlaI GCGC 2 cut(s) 625, 1055
GluI GCNGC 5 cut(s) 754, 1057, 1237, 1244, 1247
GsaI CCCAGC 1 cut(s) 125
GsuI CTGGAG 1 cut(s) 126
HaeIII GGCC 4 cut(s) 693, 706, 1246, 1266
HapII CCGG 5 cut(s) 392, 425, 527, 916, 1181
HhaI GCGC 2 cut(s) 626, 1056
Hin1II CATG 5 cut(s) 332, 524, 608, 911, 1264
Hin6I GCGC 2 cut(s) 624, 1054
HinP1I GCGC 2 cut(s) 624, 1054
HincII GTYRAC 1 cut(s) 1164
HindII GTYRAC 1 cut(s) 1164
HinfI GANTC 8 cut(s) 13, 313, 489, 565, 830, 1210, 1257, 1322
HpaII CCGG 5 cut(s) 392, 425, 527, 916, 1181
Hpy166II GTNNAC 2 cut(s) 714, 1164
Hpy188I TCNGA 4 cut(s) 156, 499, 829, 1256
Hpy188III TCNNGA 7 cut(s) 143, 169, 329, 425, 781, 847, 888
Hpy8I GTNNAC 2 cut(s) 714, 1164
HpyAV CCTTC 1 cut(s) 302
HpyCH4III ACNGT 2 cut(s) 808, 897
HpyCH4V TGCA 9 cut(s) 227, 343, 560, 645, 654, 727, 753, 942, 1286
HpyF10VI GCNNNNNNNGC 2 cut(s) 651, 703
HpyF3I CTNAG 4 cut(s) 53, 198, 398, 1313
Hsp92II CATG 5 cut(s) 332, 524, 608, 911, 1264
HspAI GCGC 2 cut(s) 624, 1054
Kpn2I TCCGGA 1 cut(s) 424
Ksp22I TGATCA 1 cut(s) 964
Kzo9I GATC 8 cut(s) 156, 297, 421, 529, 661, 880, 964, 1223
LmnI GCTCC 1 cut(s) 394
Lsp1109I GCAGC 2 cut(s) 765, 1248
LweI GCATC 4 cut(s) 136, 352, 582, 632
MaeI CTAG 4 cut(s) 17, 116, 180, 504
MaeIII GTNAC 3 cut(s) 673, 865, 1145
MalI GATC 8 cut(s) 158, 299, 423, 531, 663, 882, 966, 1225
MboI GATC 8 cut(s) 156, 297, 421, 529, 661, 880, 964, 1223
MboII GAAGA 5 cut(s) 317, 317, 893, 1261, 1317
MflI RGATCY 3 cut(s) 421, 529, 1223
MhlI GDGCHC 2 cut(s) 1187, 1293
MluCI AATT 2 cut(s) 6, 1228
MlyI GAGTC 5 cut(s) 7, 483, 1204, 1266, 1316
MmeI TCCRAC 1 cut(s) 189
MroI TCCGGA 1 cut(s) 424
MroXI GAANNNNTTC 1 cut(s) 281
MseI TTAA 3 cut(s) 128, 417, 432
MspI CCGG 5 cut(s) 392, 425, 527, 916, 1181
MspR9I CCNGG 6 cut(s) 62, 175, 216, 374, 708, 1182
Mva1269I GAATGC 1 cut(s) 656
MvaI CCWGG 5 cut(s) 62, 175, 216, 374, 708
MvnI CGCG 2 cut(s) 1056, 1243
MwoI GCNNNNNNNGC 2 cut(s) 651, 703
NciI CCSGG 1 cut(s) 1182
NdeII GATC 8 cut(s) 156, 297, 421, 529, 661, 880, 964, 1223
NlaIII CATG 5 cut(s) 332, 524, 608, 911, 1264
NlaIV GGNNCC 6 cut(s) 59, 77, 213, 390, 531, 692
NmuCI GTSAC 1 cut(s) 865
NotI GCGGCCGC 1 cut(s) 1244
NspI RCATGY 1 cut(s) 524
PagI TCATGA 1 cut(s) 328
PaqCI CACCTGC 2 cut(s) 645, 1302
PciI ACATGT 1 cut(s) 520
PctI GAATGC 1 cut(s) 656
PdmI GAANNNNTTC 1 cut(s) 281
PfeI GAWTC 3 cut(s) 313, 565, 830
PflMI CCANNNNNTGG 2 cut(s) 1010, 1112
PkrI GCNGC 5 cut(s) 755, 1058, 1238, 1245, 1248
PleI GAGTC 5 cut(s) 7, 483, 1204, 1265, 1316
PpsI GAGTC 5 cut(s) 7, 483, 1204, 1265, 1316
PscI ACATGT 1 cut(s) 520
PshAI GACNNNNGTC 1 cut(s) 493
Psp6I CCWGG 5 cut(s) 60, 173, 214, 372, 706
PspFI CCCAGC 1 cut(s) 121
PspGI CCWGG 5 cut(s) 60, 173, 214, 372, 706
PspN4I GGNNCC 6 cut(s) 59, 77, 213, 390, 531, 692
PspPI GGNCC 3 cut(s) 691, 893, 1264
PstI CTGCAG 1 cut(s) 562
PsuI RGATCY 3 cut(s) 421, 529, 1223
RsaI GTAC 7 cut(s) 30, 99, 482, 525, 713, 745, 1104
RsaNI GTAC 7 cut(s) 29, 98, 481, 524, 712, 744, 1103
SaqAI TTAA 3 cut(s) 128, 417, 432
SatI GCNGC 5 cut(s) 754, 1057, 1237, 1244, 1247
Sau3AI GATC 8 cut(s) 156, 297, 421, 529, 661, 880, 964, 1223
Sau96I GGNCC 3 cut(s) 691, 893, 1264
ScaI AGTACT 1 cut(s) 482
SchI GAGTC 5 cut(s) 7, 483, 1204, 1266, 1316
ScrFI CCNGG 6 cut(s) 62, 175, 216, 374, 708, 1182
SduI GDGCHC 2 cut(s) 1187, 1293
SfaNI GCATC 4 cut(s) 136, 352, 582, 632
SfcI CTRYAG 1 cut(s) 558
SinI GGWCC 1 cut(s) 893
SmlI CTYRAG 1 cut(s) 796
SmoI CTYRAG 1 cut(s) 796
SpeI ACTAGT 1 cut(s) 179
Sse9I AATT 2 cut(s) 6, 1228
SsiI CCGC 3 cut(s) 1056, 1243, 1247
SspMI CTAG 4 cut(s) 17, 116, 180, 504
StyD4I CCNGG 6 cut(s) 60, 173, 214, 372, 706, 1180
TaaI ACNGT 2 cut(s) 808, 897
TaqI TCGA 2 cut(s) 300, 408
TasI AATT 2 cut(s) 6, 1228
TatI WGTACW 1 cut(s) 480
TauI GCSGC 3 cut(s) 1059, 1246, 1249
TfiI GAWTC 3 cut(s) 313, 565, 830
Tru1I TTAA 3 cut(s) 128, 417, 432
Tru9I TTAA 3 cut(s) 128, 417, 432
TscAI CASTG 6 cut(s) 652, 734, 811, 874, 949, 1051
TseFI GTSAC 1 cut(s) 865
TseI GCWGC 2 cut(s) 753, 1236
Tsp45I GTSAC 1 cut(s) 865
TspDTI ATGAA 6 cut(s) 17, 290, 317, 318, 593, 1086
TspGWI ACGGA 2 cut(s) 893, 1095
TspRI CASTG 6 cut(s) 652, 734, 811, 874, 949, 1051
Van91I CCANNNNNTGG 2 cut(s) 1010, 1112
VpaK11BI GGWCC 1 cut(s) 893
XapI RAATTY 1 cut(s) 6
XceI RCATGY 1 cut(s) 524
XcmI CCANNNNNNNNNTGG 1 cut(s) 1043
XmnI GAANNNNTTC 1 cut(s) 281
XspI CTAG 4 cut(s) 17, 116, 180, 504
ZrmI AGTACT 1 cut(s) 482
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.