Rw4G013290

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0001567
Physical Location & Seq
Forward (+)
31100005 .. 31102846
2842 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G013290.1

Sequence Viewer

Length: 1248 bp
ATGGCACCTTGTCAAATTTTGGTTCTTTTGTTAGCTGTGCTAGTGCTGGGATTAAGCCTACCACGTTCAGATGCTATTCGGATCAACAAGGTTAAGACCAGGACTAGCGTTTATGTCTCCCCTGAGTTTGTGTTGGAACCAGGGTCAGTTGCTAACAAGTATTTCTATAACATTCACTTCCCAAGAGGTCATATTGCCATGAAGTATTTCAACGCTGAAGTGATCGATGAAGGAGGGAATCCTATTCCTCTTTATGATACTTATCTGCATCATTGGGTTCTTGAAAGATATTACGCCCAAAGTGGTTTCGAGGATAATAAAGATCCGGAGTTTAAGATTGTGAGAAATAGTGGATTGTGCCAGGATAATGTTCTTGGTCAGTACTATGGACTCGGGTCAGAAACACGAAAGACAGATACACATGTACCGGATCCTTTTGGAATAGAGATTGGCAACCATGCAGAGATTCCTGCTGGATATGACGAGAGATGGATGCTCAATGTTCATGCTATTGATACTCGGGGTGCAGAGGATAGGATGGGATGCACTGAATGTAGGTGTGATCTGTATAATGTAACAAAAGATGGACAAGGCCAGCCGTTGAGCCCAGGGTACACAGGGGGTTTGCAGTGCTGTTATGATGGTACACAGTGCAGCGTAAAACAAGGCTATAATGGTGTCAAGAGAAGCCTCTACTTGAGATACACTGTGAAGTGGGTTGATTGGTCCGATTCCATTGTTCCTGTCAAGATTTATATCTTTGATGTCACTGATAGAACAAATCATTCATCAGGACCCTCTCTTAAACATGATTGCCGGATCGAATATAATGTTGAGCCTTGCAGTACTGTCAATACGGTAAATGATCAGTGCTTTGACAATCAACGGGCAATGGTTACTATGCCAACTGGTGGTTATATCGTCTATGGTGTTGCCCATCAGCACACTGGGGGACGTGGCTCAACTCTGTATGGAGAGGACGGACGGGTTCTCTGTTCATCAATACCAATGTATGGGCACAGCGAGGAAGTAGGAGACGAGGCTGGTTACGTTGTGGGAATGTCAACTTGCTATCCACATCCTGGCTCTGTCAAAATAAAGGATGGGGAGACTCTGGTTCTGGCATCTAATTACAGCAGCTCGCAGCCGCACACAGGAGTCATGGGCCTCTTCTACATTTTGTCAATCCATTATATTTGGAAAATAATAATAATAATAATAATAATAATAATAATAATAAATATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SURNod19

Protein Analysis

415

Amino Acids

46.36

Weight (kDa)

5.82

Isoelectric Point (pI)

39.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SURNod19 PF07712 32 - 394 3e-181 Stress up-regulated Nod 19
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 4
AccB7I CCANNNNNTGG 3 cut(s) 911, 1013, 1082
AccIII TCCGGA 1 cut(s) 325
AciI CCGC 1 cut(s) 1148
AclWI GGATC 5 cut(s) 89, 317, 425, 438, 827
AcsI RAATTY 1 cut(s) 15
AcuI CTGAAG 1 cut(s) 237
AfaI GTAC 5 cut(s) 383, 426, 614, 646, 847
AfiI CCNNNNNNNGG 4 cut(s) 911, 1013, 1082, 1154
AflIII ACRYGT 1 cut(s) 421
AgsI TTSAA 2 cut(s) 211, 284
AjiI CACGTC 1 cut(s) 956
AjnI CCWGG 5 cut(s) 98, 139, 360, 607, 1081
AluBI AGCT 2 cut(s) 35, 1140
AluI AGCT 2 cut(s) 35, 1140
Alw26I GTCTC 3 cut(s) 121, 1029, 1103
AlwI GGATC 5 cut(s) 89, 317, 425, 438, 827
Ama87I CYCGRG 2 cut(s) 392, 519
Aor13HI TCCGGA 1 cut(s) 325
AoxI GGCC 2 cut(s) 592, 1165
ApeKI GCWGC 3 cut(s) 654, 1137, 1144
ApoI RAATTY 1 cut(s) 15
Asp700I GAANNNNTTC 1 cut(s) 206
AspS9I GGNCC 3 cut(s) 726, 794, 1165
AvaI CYCGRG 2 cut(s) 392, 519
AvaII GGWCC 2 cut(s) 726, 794
BaeGI GKGCMC 1 cut(s) 1020
BaeI ACNNNNGTAYC 4 cut(s) 408, 408, 441, 441
BamHI GGATCC 1 cut(s) 430
BanI GGYRCC 1 cut(s) 4
BanII GRGCYC 1 cut(s) 608
BbvI GCAGC 3 cut(s) 666, 1149, 1156
BccI CCATC 6 cut(s) 483, 532, 578, 635, 945, 1097
BceAI ACGGC 1 cut(s) 583
BciT130I CCWGG 5 cut(s) 100, 141, 362, 609, 1083
BclI TGATCA 1 cut(s) 865
BcoDI GTCTC 3 cut(s) 121, 1029, 1103
BfaI CTAG 2 cut(s) 41, 105
BisI GCNGC 4 cut(s) 655, 1138, 1145, 1148
BlsI GCNGC 4 cut(s) 656, 1139, 1146, 1149
BmcAI AGTACT 2 cut(s) 383, 847
Bme1390I CCNGG 5 cut(s) 100, 141, 362, 609, 1083
Bme18I GGWCC 2 cut(s) 726, 794
BmeT110I CYCGRG 2 cut(s) 392, 519
BmgBI CACGTC 1 cut(s) 956
BmgT120I GGNCC 3 cut(s) 726, 794, 1165
BmiI GGNNCC 4 cut(s) 6, 138, 432, 796
BmrFI CCNGG 5 cut(s) 100, 141, 362, 609, 1083
BmrI ACTGGG 1 cut(s) 957
BmsI GCATC 5 cut(s) 61, 277, 483, 533, 1133
BmuI ACTGGG 1 cut(s) 957
BoxI GACNNNNGTC 1 cut(s) 394
BpuEI CTTGAG 1 cut(s) 718
Bsa29I ATCGAT 1 cut(s) 225
BsaBI GATNNNNATC 2 cut(s) 261, 755
BsaJI CCNNGG 3 cut(s) 140, 607, 608
BsaWI WCCGGW 2 cut(s) 325, 427
Bsc4I CCNNNNNNNGG 4 cut(s) 911, 1013, 1082, 1154
Bse1I ACTGG 2 cut(s) 913, 952
Bse3DI GCAATG 1 cut(s) 897
Bse8I GATNNNNATC 2 cut(s) 261, 755
BseAI TCCGGA 1 cut(s) 325
BseBI CCWGG 5 cut(s) 100, 141, 362, 609, 1083
BseCI ATCGAT 1 cut(s) 225
BseDI CCNNGG 3 cut(s) 140, 607, 608
BseGI GGATG 5 cut(s) 498, 543, 548, 1078, 1108
BseJI GATNNNNATC 2 cut(s) 261, 755
BseLI CCNNNNNNNGG 4 cut(s) 911, 1013, 1082, 1154
BseMI GCAATG 1 cut(s) 897
BseMII CTCAG 1 cut(s) 114
BseNI ACTGG 2 cut(s) 913, 952
BseSI GKGCMC 1 cut(s) 1020
BseXI GCAGC 3 cut(s) 666, 1149, 1156
BseYI CCCAGC 1 cut(s) 46
BsgI GTGCAG 2 cut(s) 546, 673
BshFI GGCC 2 cut(s) 594, 1167
BshNI GGYRCC 1 cut(s) 4
BshVI ATCGAT 1 cut(s) 225
BsiHKCI CYCGRG 2 cut(s) 392, 519
BsiSI CCGG 3 cut(s) 326, 428, 817
BslFI GGGAC 1 cut(s) 966
BslI CCNNNNNNNGG 4 cut(s) 911, 1013, 1082, 1154
BsmAI GTCTC 3 cut(s) 121, 1029, 1103
BsmBI CGTCTC 1 cut(s) 1029
BsmFI GGGAC 1 cut(s) 966
BsnI GGCC 2 cut(s) 594, 1167
BsoBI CYCGRG 2 cut(s) 392, 519
Bsp1286I GDGCHC 2 cut(s) 608, 1020
Bsp13I TCCGGA 1 cut(s) 325
Bsp143I GATC 7 cut(s) 81, 222, 322, 430, 562, 819, 865
BspACI CCGC 1 cut(s) 1148
BspANI GGCC 2 cut(s) 594, 1167
BspCNI CTCAG 1 cut(s) 115
BspDI ATCGAT 1 cut(s) 225
BspEI TCCGGA 1 cut(s) 325
BspLI GGNNCC 4 cut(s) 6, 138, 432, 796
BspPI GGATC 5 cut(s) 89, 317, 425, 438, 827
BspT107I GGYRCC 1 cut(s) 4
BsrDI GCAATG 1 cut(s) 897
BsrI ACTGG 2 cut(s) 913, 952
BssECI CCNNGG 3 cut(s) 140, 607, 608
BssMI GATC 7 cut(s) 81, 222, 322, 430, 562, 819, 865
Bst2UI CCWGG 5 cut(s) 100, 141, 362, 609, 1083
Bst4CI ACNGT 4 cut(s) 651, 709, 850, 859
Bst6I CTCTTC 1 cut(s) 1175
BstC8I GCNNGC 2 cut(s) 596, 1142
BstDEI CTNAG 1 cut(s) 123
BstF5I GGATG 5 cut(s) 498, 543, 548, 1078, 1108
BstKTI GATC 7 cut(s) 84, 225, 325, 433, 565, 822, 868
BstMAI GTCTC 3 cut(s) 121, 1029, 1103
BstMBI GATC 7 cut(s) 81, 222, 322, 430, 562, 819, 865
BstNI CCWGG 5 cut(s) 100, 141, 362, 609, 1083
BstNSI RCATGY 1 cut(s) 425
BstPAI GACNNNNGTC 1 cut(s) 394
BstSCI CCNGG 5 cut(s) 98, 139, 360, 607, 1081
BstSLI GKGCMC 1 cut(s) 1020
BstV1I GCAGC 3 cut(s) 666, 1149, 1156
BstX2I RGATCY 2 cut(s) 322, 430
BstYI RGATCY 2 cut(s) 322, 430
Bsu15I ATCGAT 1 cut(s) 225
BsuRI GGCC 2 cut(s) 594, 1167
BsuTUI ATCGAT 1 cut(s) 225
BtrI CACGTC 1 cut(s) 956
BtsCI GGATG 5 cut(s) 498, 543, 548, 1078, 1108
BtsI GCAGTG 1 cut(s) 635
BtsIMutI CAGTG 7 cut(s) 546, 635, 656, 705, 768, 875, 945
Cac8I GCNNGC 2 cut(s) 596, 1142
Cfr13I GGNCC 3 cut(s) 726, 794, 1165
ClaI ATCGAT 1 cut(s) 225
Csp6I GTAC 5 cut(s) 382, 425, 613, 645, 846
CviAII CATG 6 cut(s) 199, 422, 458, 506, 809, 1162
CviQI GTAC 5 cut(s) 382, 425, 613, 645, 846
DdeI CTNAG 1 cut(s) 123
DpnI GATC 7 cut(s) 83, 224, 324, 432, 564, 821, 867
DpnII GATC 7 cut(s) 81, 222, 322, 430, 562, 819, 865
Eam1104I CTCTTC 1 cut(s) 1175
EarI CTCTTC 1 cut(s) 1175
Eco24I GRGCYC 1 cut(s) 608
Eco47I GGWCC 2 cut(s) 726, 794
Eco57I CTGAAG 1 cut(s) 237
Eco88I CYCGRG 2 cut(s) 392, 519
EcoO109I RGGNCCY 1 cut(s) 794
EcoRII CCWGG 5 cut(s) 98, 139, 360, 607, 1081
EcoT38I GRGCYC 1 cut(s) 608
Esp3I CGTCTC 1 cut(s) 1029
FaeI CATG 6 cut(s) 202, 425, 461, 509, 812, 1165
FaqI GGGAC 1 cut(s) 966
FatI CATG 6 cut(s) 198, 421, 457, 505, 808, 1161
FbaI TGATCA 1 cut(s) 865
Fnu4HI GCNGC 4 cut(s) 655, 1138, 1145, 1148
FokI GGATG 5 cut(s) 505, 550, 555, 1065, 1115
FriOI GRGCYC 1 cut(s) 608
Fsp4HI GCNGC 4 cut(s) 655, 1138, 1145, 1148
FspBI CTAG 2 cut(s) 41, 105
GluI GCNGC 4 cut(s) 655, 1138, 1145, 1148
GsaI CCCAGC 1 cut(s) 50
HaeIII GGCC 2 cut(s) 594, 1167
HapII CCGG 3 cut(s) 326, 428, 817
Hin1II CATG 6 cut(s) 202, 425, 461, 509, 812, 1165
HincII GTYRAC 1 cut(s) 1065
HindII GTYRAC 1 cut(s) 1065
HinfI GANTC 6 cut(s) 238, 390, 466, 731, 1111, 1158
HpaII CCGG 3 cut(s) 326, 428, 817
Hpy166II GTNNAC 3 cut(s) 615, 647, 1065
Hpy188I TCNGA 4 cut(s) 70, 81, 400, 730
Hpy188III TCNNGA 5 cut(s) 281, 326, 682, 748, 792
Hpy8I GTNNAC 3 cut(s) 615, 647, 1065
HpyAV CCTTC 1 cut(s) 224
HpyCH4III ACNGT 4 cut(s) 651, 709, 850, 859
HpyCH4IV ACGT 3 cut(s) 64, 955, 1050
HpyCH4V TGCA 7 cut(s) 268, 461, 527, 546, 628, 654, 843
HpyF3I CTNAG 1 cut(s) 123
HpySE526I ACGT 3 cut(s) 64, 955, 1050
Hsp92II CATG 6 cut(s) 202, 425, 461, 509, 812, 1165
Kpn2I TCCGGA 1 cut(s) 325
Ksp22I TGATCA 1 cut(s) 865
Kzo9I GATC 7 cut(s) 81, 222, 322, 430, 562, 819, 865
Lsp1109I GCAGC 3 cut(s) 666, 1149, 1156
LweI GCATC 5 cut(s) 61, 277, 483, 533, 1133
MaeI CTAG 2 cut(s) 41, 105
MaeII ACGT 3 cut(s) 64, 955, 1050
MaeIII GTNAC 4 cut(s) 574, 766, 895, 1046
MalI GATC 7 cut(s) 83, 224, 324, 432, 564, 821, 867
MboI GATC 7 cut(s) 81, 222, 322, 430, 562, 819, 865
MboII GAAGA 1 cut(s) 1162
MflI RGATCY 2 cut(s) 322, 430
MhlI GDGCHC 2 cut(s) 608, 1020
MluCI AATT 2 cut(s) 15, 1129
MlyI GAGTC 3 cut(s) 384, 1105, 1167
MmeI TCCRAC 1 cut(s) 114
MroI TCCGGA 1 cut(s) 325
MroXI GAANNNNTTC 1 cut(s) 206
MseI TTAA 5 cut(s) 53, 93, 333, 804, 1246
MspI CCGG 3 cut(s) 326, 428, 817
MspR9I CCNGG 5 cut(s) 100, 141, 362, 609, 1083
MvaI CCWGG 5 cut(s) 100, 141, 362, 609, 1083
NdeII GATC 7 cut(s) 81, 222, 322, 430, 562, 819, 865
NlaIII CATG 6 cut(s) 202, 425, 461, 509, 812, 1165
NlaIV GGNNCC 4 cut(s) 6, 138, 432, 796
NmuCI GTSAC 1 cut(s) 766
NspI RCATGY 1 cut(s) 425
PasI CCCWGGG 1 cut(s) 608
PciI ACATGT 1 cut(s) 421
PdmI GAANNNNTTC 1 cut(s) 206
PfeI GAWTC 3 cut(s) 238, 466, 731
PflMI CCANNNNNTGG 3 cut(s) 911, 1013, 1082
PkrI GCNGC 4 cut(s) 656, 1139, 1146, 1149
PleI GAGTC 3 cut(s) 384, 1105, 1166
PpsI GAGTC 3 cut(s) 384, 1105, 1166
PpuMI RGGWCCY 1 cut(s) 794
PscI ACATGT 1 cut(s) 421
PshAI GACNNNNGTC 1 cut(s) 394
Psp5II RGGWCCY 1 cut(s) 794
Psp6I CCWGG 5 cut(s) 98, 139, 360, 607, 1081
PspFI CCCAGC 1 cut(s) 46
PspGI CCWGG 5 cut(s) 98, 139, 360, 607, 1081
PspN4I GGNNCC 4 cut(s) 6, 138, 432, 796
PspPI GGNCC 3 cut(s) 726, 794, 1165
PspPPI RGGWCCY 1 cut(s) 794
PsuI RGATCY 2 cut(s) 322, 430
RsaI GTAC 5 cut(s) 383, 426, 614, 646, 847
RsaNI GTAC 5 cut(s) 382, 425, 613, 645, 846
SaqAI TTAA 5 cut(s) 53, 93, 333, 804, 1246
SatI GCNGC 4 cut(s) 655, 1138, 1145, 1148
Sau3AI GATC 7 cut(s) 81, 222, 322, 430, 562, 819, 865
Sau96I GGNCC 3 cut(s) 726, 794, 1165
ScaI AGTACT 2 cut(s) 383, 847
SchI GAGTC 3 cut(s) 384, 1105, 1167
ScrFI CCNGG 5 cut(s) 100, 141, 362, 609, 1083
SduI GDGCHC 2 cut(s) 608, 1020
SetI ASST 9 cut(s) 10, 37, 67, 93, 190, 560, 958, 1053, 1142
SfaNI GCATC 5 cut(s) 61, 277, 483, 533, 1133
SinI GGWCC 2 cut(s) 726, 794
SmlI CTYRAG 1 cut(s) 697
SmoI CTYRAG 1 cut(s) 697
Sse9I AATT 2 cut(s) 15, 1129
SsiI CCGC 1 cut(s) 1148
SspI AATATT 1 cut(s) 1243
SspMI CTAG 2 cut(s) 41, 105
StyD4I CCNGG 5 cut(s) 98, 139, 360, 607, 1081
TaaI ACNGT 4 cut(s) 651, 709, 850, 859
TaiI ACGT 3 cut(s) 67, 958, 1053
TaqI TCGA 3 cut(s) 225, 309, 822
TasI AATT 2 cut(s) 15, 1129
TatI WGTACW 2 cut(s) 381, 845
TauI GCSGC 1 cut(s) 1150
TfiI GAWTC 3 cut(s) 238, 466, 731
Tru1I TTAA 5 cut(s) 53, 93, 333, 804, 1246
Tru9I TTAA 5 cut(s) 53, 93, 333, 804, 1246
TscAI CASTG 7 cut(s) 553, 635, 656, 712, 775, 875, 952
TseFI GTSAC 1 cut(s) 766
TseI GCWGC 3 cut(s) 654, 1137, 1144
Tsp45I GTSAC 1 cut(s) 766
TspDTI ATGAA 5 cut(s) 215, 243, 494, 777, 987
TspGWI ACGGA 1 cut(s) 996
TspRI CASTG 7 cut(s) 553, 635, 656, 712, 775, 875, 952
Van91I CCANNNNNTGG 3 cut(s) 911, 1013, 1082
VpaK11BI GGWCC 2 cut(s) 726, 794
XapI RAATTY 1 cut(s) 15
XceI RCATGY 1 cut(s) 425
XcmI CCANNNNNNNNNTGG 1 cut(s) 944
XmnI GAANNNNTTC 1 cut(s) 206
XspI CTAG 2 cut(s) 41, 105
ZrmI AGTACT 2 cut(s) 383, 847
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.