RchiOBHm_Chr4g0410211

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0001567
Physical Location & Seq
Forward (+)
33928830 .. 33932166
3337 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ38115

Sequence Viewer

Length: 1224 bp
ATGGCACCTTGTCAAATTTTGGTTCTTTTGTTAGCTGTGCTAGTGCTGGGATTAAGCCTACCACGTTCAGATGCTATTCGGATCAACAAGGTTAAGACCAGGACTAGCGTTTATGTCTCCCCTGAGTTTGTGTTGGAACCAGGGTCAGTTGCTAACAAGTATTTCTATAACATTCACTTCCCAAGAGGTCATATTGCCATGAAGTATTTCAATGCTGAAGTGATCGATGAAGAAGGGAATCCTATTCCTCTTTATGATACTTATCTGCATCATTGGGTTCTTGAAAGATATTACGCCCAGACAAGTTATGTGGAGTCAAGTGGTTTCGAGGATAATAAAGATCCGAAGTTTAAGATTGTGAGAAATAGTGGATTGTGCCAGGATAATGTTCTTGGTCAGTACTATGGACTCGGGTCAGAAACACGAAAGACAGATACACATGTACCGGATCCTTTTGGAATAGAGATTGGCAACCCTGCAGAGATTCCTGCTGGATATGAGGAGAGATGGATGCTCAATGTTCATGCTATTGATACTCGGGGTGCAGAGGATAGGATGGGATGCACTGAATGCAGGTGTGATCTGTATAATGTAACAAAAGATGGACAAGGCCAGCCGTTGAGCCCAGGGTACACAGGGGGTTTGCAGTGCTGTTATGATGGTACACAGTGCAGCGTAAAACAAGGCTATAATGGTGTCAAGAGAAGCCTCTACTTGAGATACACTGTGAAGTGGGTTGATTGGTCCGATTCCATTGTGCCTGTCAAGATTTATATCTTTGATGTCACTGATAGAACAAATCATTCATCAGGACCCTCTGTTAAACATGATTGCCGGATCGAATATAATGTTGAGCCTTGTAGTACTGTTGATACGGTAAATAATCAGTGCTTTGACAATCAACGGGCAATGGTTACTATGCCAACTGGTGGTTATATAGTCTATGGTGTTGCCCATCAGCACACTGGGGGACGTGGCTCAACTCTGTATGGAGAGGACGGACGGGTTCTATGTTCATCAATACCAATATATGGGCAAAGCGAGGAAGTAGGAGACGAGGCTGGTTACATTGTGGGAATGTCAACTTGCTATCCACATCCTGGCTCTGTCAAAATAAAGGATGGGGAGACTCTGGTTCTGGCATCTAATTACAGCAGCTCGCAGCTGCACACAGGAGTCATGGGCCTCTTCTACATTTTGGTTGCAGAGTATCAGAAAAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SURNod19

Protein Analysis

407

Amino Acids

45.38

Weight (kDa)

5.56

Isoelectric Point (pI)

37.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SURNod19 PF07712 32 - 403 9.3e-188 Stress up-regulated Nod 19
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 564
Acc36I ACCTGC 1 cut(s) 564
AccB1I GGYRCC 1 cut(s) 4
AccB7I CCANNNNNTGG 3 cut(s) 929, 1031, 1100
AclWI GGATC 5 cut(s) 89, 335, 443, 456, 845
AcsI RAATTY 1 cut(s) 15
AcuI CTGAAG 1 cut(s) 237
AfaI GTAC 5 cut(s) 401, 444, 632, 664, 865
AfiI CCNNNNNNNGG 3 cut(s) 929, 1031, 1100
AflIII ACRYGT 1 cut(s) 439
AgsI TTSAA 2 cut(s) 211, 284
AjiI CACGTC 1 cut(s) 974
AjnI CCWGG 5 cut(s) 98, 139, 378, 625, 1099
AluBI AGCT 3 cut(s) 35, 1158, 1165
AluI AGCT 3 cut(s) 35, 1158, 1165
Alw26I GTCTC 3 cut(s) 121, 1047, 1121
AlwI GGATC 5 cut(s) 89, 335, 443, 456, 845
Ama87I CYCGRG 2 cut(s) 410, 537
AoxI GGCC 2 cut(s) 610, 1183
ApeKI GCWGC 4 cut(s) 672, 1155, 1162, 1165
ApoI RAATTY 1 cut(s) 15
Asp700I GAANNNNTTC 1 cut(s) 206
AspS9I GGNCC 3 cut(s) 744, 812, 1183
AvaI CYCGRG 2 cut(s) 410, 537
AvaII GGWCC 2 cut(s) 744, 812
BaeI ACNNNNGTAYC 4 cut(s) 426, 426, 459, 459
BamHI GGATCC 1 cut(s) 448
BanI GGYRCC 1 cut(s) 4
BanII GRGCYC 1 cut(s) 626
BbvI GCAGC 4 cut(s) 684, 1152, 1167, 1174
BccI CCATC 6 cut(s) 501, 550, 596, 653, 963, 1115
BceAI ACGGC 1 cut(s) 601
BciT130I CCWGG 5 cut(s) 100, 141, 380, 627, 1101
BcoDI GTCTC 3 cut(s) 121, 1047, 1121
BfaI CTAG 2 cut(s) 41, 105
BfmI CTRYAG 1 cut(s) 477
BfuAI ACCTGC 1 cut(s) 564
BisI GCNGC 4 cut(s) 673, 1156, 1163, 1166
BlsI GCNGC 4 cut(s) 674, 1157, 1164, 1167
BmcAI AGTACT 2 cut(s) 401, 865
Bme1390I CCNGG 5 cut(s) 100, 141, 380, 627, 1101
Bme18I GGWCC 2 cut(s) 744, 812
BmeT110I CYCGRG 2 cut(s) 410, 537
BmgBI CACGTC 1 cut(s) 974
BmgT120I GGNCC 3 cut(s) 744, 812, 1183
BmiI GGNNCC 4 cut(s) 6, 138, 450, 814
BmrFI CCNGG 5 cut(s) 100, 141, 380, 627, 1101
BmrI ACTGGG 1 cut(s) 975
BmsI GCATC 5 cut(s) 61, 277, 501, 551, 1151
BmuI ACTGGG 1 cut(s) 975
BoxI GACNNNNGTC 1 cut(s) 412
BpuEI CTTGAG 1 cut(s) 736
Bsa29I ATCGAT 1 cut(s) 225
BsaBI GATNNNNATC 2 cut(s) 261, 773
BsaJI CCNNGG 3 cut(s) 140, 625, 626
BsaWI WCCGGW 1 cut(s) 445
Bsc4I CCNNNNNNNGG 3 cut(s) 929, 1031, 1100
Bse1I ACTGG 2 cut(s) 931, 970
Bse3DI GCAATG 1 cut(s) 915
Bse8I GATNNNNATC 2 cut(s) 261, 773
BseBI CCWGG 5 cut(s) 100, 141, 380, 627, 1101
BseCI ATCGAT 1 cut(s) 225
BseDI CCNNGG 3 cut(s) 140, 625, 626
BseGI GGATG 5 cut(s) 516, 561, 566, 1096, 1126
BseJI GATNNNNATC 2 cut(s) 261, 773
BseLI CCNNNNNNNGG 3 cut(s) 929, 1031, 1100
BseMI GCAATG 1 cut(s) 915
BseMII CTCAG 1 cut(s) 114
BseNI ACTGG 2 cut(s) 931, 970
BseRI GAGGAG 1 cut(s) 515
BseXI GCAGC 4 cut(s) 684, 1152, 1167, 1174
BseYI CCCAGC 1 cut(s) 46
BsgI GTGCAG 3 cut(s) 564, 691, 1151
BshFI GGCC 2 cut(s) 612, 1185
BshNI GGYRCC 1 cut(s) 4
BshVI ATCGAT 1 cut(s) 225
BsiHKCI CYCGRG 2 cut(s) 410, 537
BsiSI CCGG 2 cut(s) 446, 835
BslFI GGGAC 1 cut(s) 984
BslI CCNNNNNNNGG 3 cut(s) 929, 1031, 1100
BsmAI GTCTC 3 cut(s) 121, 1047, 1121
BsmBI CGTCTC 1 cut(s) 1047
BsmFI GGGAC 1 cut(s) 984
BsmI GAATGC 1 cut(s) 575
BsnI GGCC 2 cut(s) 612, 1185
BsoBI CYCGRG 2 cut(s) 410, 537
Bsp1286I GDGCHC 1 cut(s) 626
Bsp143I GATC 6 cut(s) 81, 222, 340, 448, 580, 837
BspANI GGCC 2 cut(s) 612, 1185
BspCNI CTCAG 1 cut(s) 115
BspDI ATCGAT 1 cut(s) 225
BspLI GGNNCC 4 cut(s) 6, 138, 450, 814
BspMAI CTGCAG 1 cut(s) 481
BspMI ACCTGC 1 cut(s) 564
BspPI GGATC 5 cut(s) 89, 335, 443, 456, 845
BspT107I GGYRCC 1 cut(s) 4
BsrDI GCAATG 1 cut(s) 915
BsrI ACTGG 2 cut(s) 931, 970
BssECI CCNNGG 3 cut(s) 140, 625, 626
BssMI GATC 6 cut(s) 81, 222, 340, 448, 580, 837
Bst2UI CCWGG 5 cut(s) 100, 141, 380, 627, 1101
Bst4CI ACNGT 4 cut(s) 669, 727, 868, 877
Bst6I CTCTTC 1 cut(s) 1193
BstAPI GCANNNNNTGC 1 cut(s) 570
BstC8I GCNNGC 2 cut(s) 614, 1160
BstDEI CTNAG 1 cut(s) 123
BstF5I GGATG 5 cut(s) 516, 561, 566, 1096, 1126
BstKTI GATC 6 cut(s) 84, 225, 343, 451, 583, 840
BstMAI GTCTC 3 cut(s) 121, 1047, 1121
BstMBI GATC 6 cut(s) 81, 222, 340, 448, 580, 837
BstMWI GCNNNNNNNGC 1 cut(s) 570
BstNI CCWGG 5 cut(s) 100, 141, 380, 627, 1101
BstNSI RCATGY 1 cut(s) 443
BstPAI GACNNNNGTC 1 cut(s) 412
BstSCI CCNGG 5 cut(s) 98, 139, 378, 625, 1099
BstSFI CTRYAG 1 cut(s) 477
BstV1I GCAGC 4 cut(s) 684, 1152, 1167, 1174
BstX2I RGATCY 2 cut(s) 340, 448
BstYI RGATCY 2 cut(s) 340, 448
Bsu15I ATCGAT 1 cut(s) 225
BsuRI GGCC 2 cut(s) 612, 1185
BsuTUI ATCGAT 1 cut(s) 225
BtrI CACGTC 1 cut(s) 974
BtsCI GGATG 5 cut(s) 516, 561, 566, 1096, 1126
BtsI GCAGTG 1 cut(s) 653
BtsIMutI CAGTG 7 cut(s) 564, 653, 674, 723, 786, 893, 963
BveI ACCTGC 1 cut(s) 564
Cac8I GCNNGC 2 cut(s) 614, 1160
Cfr13I GGNCC 3 cut(s) 744, 812, 1183
ClaI ATCGAT 1 cut(s) 225
Csp6I GTAC 5 cut(s) 400, 443, 631, 663, 864
CspCI CAANNNNNGTGG 2 cut(s) 291, 326
CviAII CATG 5 cut(s) 199, 440, 524, 827, 1180
CviQI GTAC 5 cut(s) 400, 443, 631, 663, 864
DdeI CTNAG 1 cut(s) 123
DpnI GATC 6 cut(s) 83, 224, 342, 450, 582, 839
DpnII GATC 6 cut(s) 81, 222, 340, 448, 580, 837
Eam1104I CTCTTC 1 cut(s) 1193
EarI CTCTTC 1 cut(s) 1193
Eco24I GRGCYC 1 cut(s) 626
Eco47I GGWCC 2 cut(s) 744, 812
Eco57I CTGAAG 1 cut(s) 237
Eco88I CYCGRG 2 cut(s) 410, 537
EcoO109I RGGNCCY 1 cut(s) 812
EcoRII CCWGG 5 cut(s) 98, 139, 378, 625, 1099
EcoT38I GRGCYC 1 cut(s) 626
Esp3I CGTCTC 1 cut(s) 1047
FaeI CATG 5 cut(s) 202, 443, 527, 830, 1183
FaqI GGGAC 1 cut(s) 984
FatI CATG 5 cut(s) 198, 439, 523, 826, 1179
Fnu4HI GCNGC 4 cut(s) 673, 1156, 1163, 1166
FokI GGATG 5 cut(s) 523, 568, 573, 1083, 1133
FriOI GRGCYC 1 cut(s) 626
Fsp4HI GCNGC 4 cut(s) 673, 1156, 1163, 1166
FspBI CTAG 2 cut(s) 41, 105
GluI GCNGC 4 cut(s) 673, 1156, 1163, 1166
GsaI CCCAGC 1 cut(s) 50
HaeIII GGCC 2 cut(s) 612, 1185
HapII CCGG 2 cut(s) 446, 835
Hin1II CATG 5 cut(s) 202, 443, 527, 830, 1183
HincII GTYRAC 1 cut(s) 1083
HindII GTYRAC 1 cut(s) 1083
HinfI GANTC 7 cut(s) 238, 314, 408, 484, 749, 1129, 1176
HpaII CCGG 2 cut(s) 446, 835
Hpy166II GTNNAC 3 cut(s) 633, 665, 1083
Hpy188I TCNGA 6 cut(s) 70, 81, 345, 418, 748, 1215
Hpy188III TCNNGA 4 cut(s) 281, 700, 766, 810
Hpy8I GTNNAC 3 cut(s) 633, 665, 1083
HpyAV CCTTC 1 cut(s) 227
HpyCH4III ACNGT 4 cut(s) 669, 727, 868, 877
HpyCH4IV ACGT 2 cut(s) 64, 973
HpyCH4V TGCA 9 cut(s) 268, 479, 545, 564, 573, 646, 672, 1168, 1205
HpyF10VI GCNNNNNNNGC 1 cut(s) 570
HpyF3I CTNAG 1 cut(s) 123
HpySE526I ACGT 2 cut(s) 64, 973
Hsp92II CATG 5 cut(s) 202, 443, 527, 830, 1183
Kzo9I GATC 6 cut(s) 81, 222, 340, 448, 580, 837
Lsp1109I GCAGC 4 cut(s) 684, 1152, 1167, 1174
LweI GCATC 5 cut(s) 61, 277, 501, 551, 1151
MaeI CTAG 2 cut(s) 41, 105
MaeII ACGT 2 cut(s) 64, 973
MaeIII GTNAC 4 cut(s) 592, 784, 913, 1064
MalI GATC 6 cut(s) 83, 224, 342, 450, 582, 839
MboI GATC 6 cut(s) 81, 222, 340, 448, 580, 837
MboII GAAGA 2 cut(s) 242, 1180
MflI RGATCY 2 cut(s) 340, 448
MhlI GDGCHC 1 cut(s) 626
MluCI AATT 3 cut(s) 15, 1147, 1219
MlyI GAGTC 4 cut(s) 323, 402, 1123, 1185
MmeI TCCRAC 1 cut(s) 114
MroXI GAANNNNTTC 1 cut(s) 206
MseI TTAA 4 cut(s) 53, 93, 351, 822
MspA1I CMGCKG 1 cut(s) 1165
MspI CCGG 2 cut(s) 446, 835
MspR9I CCNGG 5 cut(s) 100, 141, 380, 627, 1101
Mva1269I GAATGC 1 cut(s) 575
MvaI CCWGG 5 cut(s) 100, 141, 380, 627, 1101
MwoI GCNNNNNNNGC 1 cut(s) 570
NdeII GATC 6 cut(s) 81, 222, 340, 448, 580, 837
NlaIII CATG 5 cut(s) 202, 443, 527, 830, 1183
NlaIV GGNNCC 4 cut(s) 6, 138, 450, 814
NmuCI GTSAC 1 cut(s) 784
NspI RCATGY 1 cut(s) 443
PaqCI CACCTGC 1 cut(s) 564
PasI CCCWGGG 1 cut(s) 626
PciI ACATGT 1 cut(s) 439
PctI GAATGC 1 cut(s) 575
PdmI GAANNNNTTC 1 cut(s) 206
PfeI GAWTC 3 cut(s) 238, 484, 749
PflMI CCANNNNNTGG 3 cut(s) 929, 1031, 1100
PkrI GCNGC 4 cut(s) 674, 1157, 1164, 1167
PleI GAGTC 4 cut(s) 322, 402, 1123, 1184
PpsI GAGTC 4 cut(s) 322, 402, 1123, 1184
PpuMI RGGWCCY 1 cut(s) 812
PscI ACATGT 1 cut(s) 439
PshAI GACNNNNGTC 1 cut(s) 412
Psp5II RGGWCCY 1 cut(s) 812
Psp6I CCWGG 5 cut(s) 98, 139, 378, 625, 1099
PspFI CCCAGC 1 cut(s) 46
PspGI CCWGG 5 cut(s) 98, 139, 378, 625, 1099
PspN4I GGNNCC 4 cut(s) 6, 138, 450, 814
PspPI GGNCC 3 cut(s) 744, 812, 1183
PspPPI RGGWCCY 1 cut(s) 812
PstI CTGCAG 1 cut(s) 481
PsuI RGATCY 2 cut(s) 340, 448
PvuII CAGCTG 1 cut(s) 1165
RsaI GTAC 5 cut(s) 401, 444, 632, 664, 865
RsaNI GTAC 5 cut(s) 400, 443, 631, 663, 864
SaqAI TTAA 4 cut(s) 53, 93, 351, 822
SatI GCNGC 4 cut(s) 673, 1156, 1163, 1166
Sau3AI GATC 6 cut(s) 81, 222, 340, 448, 580, 837
Sau96I GGNCC 3 cut(s) 744, 812, 1183
ScaI AGTACT 2 cut(s) 401, 865
SchI GAGTC 4 cut(s) 323, 402, 1123, 1185
ScrFI CCNGG 5 cut(s) 100, 141, 380, 627, 1101
SduI GDGCHC 1 cut(s) 626
SetI ASST 9 cut(s) 10, 37, 67, 93, 190, 578, 976, 1160, 1167
SfaNI GCATC 5 cut(s) 61, 277, 501, 551, 1151
SfcI CTRYAG 1 cut(s) 477
SinI GGWCC 2 cut(s) 744, 812
SmlI CTYRAG 1 cut(s) 715
SmoI CTYRAG 1 cut(s) 715
Sse9I AATT 3 cut(s) 15, 1147, 1219
SspMI CTAG 2 cut(s) 41, 105
StyD4I CCNGG 5 cut(s) 98, 139, 378, 625, 1099
TaaI ACNGT 4 cut(s) 669, 727, 868, 877
TaiI ACGT 2 cut(s) 67, 976
TaqI TCGA 3 cut(s) 225, 327, 840
TasI AATT 3 cut(s) 15, 1147, 1219
TatI WGTACW 2 cut(s) 399, 863
TfiI GAWTC 3 cut(s) 238, 484, 749
Tru1I TTAA 4 cut(s) 53, 93, 351, 822
Tru9I TTAA 4 cut(s) 53, 93, 351, 822
TscAI CASTG 7 cut(s) 571, 653, 674, 730, 793, 893, 970
TseFI GTSAC 1 cut(s) 784
TseI GCWGC 4 cut(s) 672, 1155, 1162, 1165
Tsp45I GTSAC 1 cut(s) 784
TspDTI ATGAA 5 cut(s) 215, 243, 512, 795, 1005
TspGWI ACGGA 1 cut(s) 1014
TspRI CASTG 7 cut(s) 571, 653, 674, 730, 793, 893, 970
Van91I CCANNNNNTGG 3 cut(s) 929, 1031, 1100
VpaK11BI GGWCC 2 cut(s) 744, 812
XapI RAATTY 1 cut(s) 15
XceI RCATGY 1 cut(s) 443
XcmI CCANNNNNNNNNTGG 1 cut(s) 962
XmnI GAANNNNTTC 1 cut(s) 206
XspI CTAG 2 cut(s) 41, 105
ZrmI AGTACT 2 cut(s) 401, 865
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.