Rmu_sc0034815.1_g000001

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0034815.1
OG0001567
Physical Location & Seq
Forward (+)
323 .. 874
552 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0034815.1_g000001.1.cds

Sequence Viewer

Length: 552 bp
atggcaccttcttttcaaagtttggttcttttgttagctgtgctagtgctgggattaagcctaccatggtcagatgctattcggatcaataaagttaagaccaggactagcgtttatgtctcccctaagcttgtgttggaaccagggtcagttgcagacaagtatttctataacattaacttcccaagaggtcatattgctatcaagtatttcaatgctgaagtgatcgatgaagaagggaatcctattcctcttcacgagacttatctgcatcactgggttcttggaagatattatggcaggacaagttatgtggaaccagagcagattgggttcgatgatattgacgaatcagattttcagttcgtgagaaacagtggtttgtgccagaataatgttcttggacagtactatggactcgggtcagaaacacgaaagacagacacacatgtaccggatccttttggaatcgagattggcaaccctgcagagattcctgctggatatgaggagagatggatgctcaatgttcatgctattgatactcggggc
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SURNod19

Protein Analysis

184

Amino Acids

20.83

Weight (kDa)

5.17

Isoelectric Point (pI)

39.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 4
AclWI GGATC 3 cut(s) 92, 452, 465
AcuI CTGAAG 1 cut(s) 240
AfaI GTAC 2 cut(s) 410, 453
AflIII ACRYGT 1 cut(s) 448
AgsI TTSAA 2 cut(s) 17, 214
AjnI CCWGG 2 cut(s) 101, 142
AluBI AGCT 2 cut(s) 38, 130
AluI AGCT 2 cut(s) 38, 130
Alw26I GTCTC 2 cut(s) 124, 254
AlwI GGATC 3 cut(s) 92, 452, 465
Ama87I CYCGRG 2 cut(s) 419, 546
AvaI CYCGRG 2 cut(s) 419, 546
BaeI ACNNNNGTAYC 2 cut(s) 435, 468
BamHI GGATCC 1 cut(s) 457
BanI GGYRCC 1 cut(s) 4
BauI CACGAG 1 cut(s) 257
BccI CCATC 1 cut(s) 510
BciT130I CCWGG 2 cut(s) 103, 144
BcoDI GTCTC 2 cut(s) 124, 254
BfaI CTAG 2 cut(s) 44, 108
BfmI CTRYAG 1 cut(s) 486
BmcAI AGTACT 1 cut(s) 410
Bme1390I CCNGG 2 cut(s) 103, 144
BmeT110I CYCGRG 2 cut(s) 419, 546
BmiI GGNNCC 4 cut(s) 6, 141, 318, 459
BmrFI CCNGG 2 cut(s) 103, 144
BmrI ACTGGG 1 cut(s) 286
BmsI GCATC 3 cut(s) 64, 280, 510
BmuI ACTGGG 1 cut(s) 286
BoxI GACNNNNGTC 1 cut(s) 421
Bpu10I CCTNAGC 1 cut(s) 126
Bsa29I ATCGAT 1 cut(s) 228
BsaJI CCNNGG 2 cut(s) 65, 143
BsaWI WCCGGW 1 cut(s) 454
Bse1I ACTGG 1 cut(s) 281
BseBI CCWGG 2 cut(s) 103, 144
BseCI ATCGAT 1 cut(s) 228
BseDI CCNNGG 2 cut(s) 65, 143
BseGI GGATG 1 cut(s) 525
BseNI ACTGG 1 cut(s) 281
BseRI GAGGAG 1 cut(s) 524
BseYI CCCAGC 1 cut(s) 49
BshNI GGYRCC 1 cut(s) 4
BshVI ATCGAT 1 cut(s) 228
BsiHKCI CYCGRG 2 cut(s) 419, 546
BsiSI CCGG 1 cut(s) 455
BsmAI GTCTC 2 cut(s) 124, 254
BsoBI CYCGRG 2 cut(s) 419, 546
Bsp143I GATC 3 cut(s) 84, 225, 457
Bsp19I CCATGG 1 cut(s) 65
BspDI ATCGAT 1 cut(s) 228
BspLI GGNNCC 4 cut(s) 6, 141, 318, 459
BspMAI CTGCAG 1 cut(s) 490
BspPI GGATC 3 cut(s) 92, 452, 465
BspT107I GGYRCC 1 cut(s) 4
BsrI ACTGG 1 cut(s) 281
BssECI CCNNGG 2 cut(s) 65, 143
BssMI GATC 3 cut(s) 84, 225, 457
BssSI CACGAG 1 cut(s) 257
BssT1I CCWWGG 1 cut(s) 65
Bst2BI CACGAG 1 cut(s) 257
Bst2UI CCWGG 2 cut(s) 103, 144
Bst4CI ACNGT 2 cut(s) 377, 408
Bst6I CTCTTC 1 cut(s) 258
BstDEI CTNAG 1 cut(s) 126
BstDSI CCRYGG 1 cut(s) 65
BstF5I GGATG 1 cut(s) 525
BstKTI GATC 3 cut(s) 87, 228, 460
BstMAI GTCTC 2 cut(s) 124, 254
BstMBI GATC 3 cut(s) 84, 225, 457
BstNI CCWGG 2 cut(s) 103, 144
BstNSI RCATGY 1 cut(s) 452
BstPAI GACNNNNGTC 1 cut(s) 421
BstSCI CCNGG 2 cut(s) 101, 142
BstSFI CTRYAG 1 cut(s) 486
BstX2I RGATCY 1 cut(s) 457
BstYI RGATCY 1 cut(s) 457
Bsu15I ATCGAT 1 cut(s) 228
BsuTUI ATCGAT 1 cut(s) 228
BtgI CCRYGG 1 cut(s) 65
BtsCI GGATG 1 cut(s) 525
BtsIMutI CAGTG 2 cut(s) 274, 382
ClaI ATCGAT 1 cut(s) 228
Csp6I GTAC 2 cut(s) 409, 452
CspCI CAANNNNNGTGG 2 cut(s) 294, 329
CviAII CATG 3 cut(s) 66, 449, 533
CviJI RGCY 3 cut(s) 38, 60, 130
CviKI_1 RGCY 3 cut(s) 38, 60, 130
CviQI GTAC 2 cut(s) 409, 452
DdeI CTNAG 1 cut(s) 126
DpnI GATC 3 cut(s) 86, 227, 459
DpnII GATC 3 cut(s) 84, 225, 457
Eam1104I CTCTTC 1 cut(s) 258
EarI CTCTTC 1 cut(s) 258
Eco130I CCWWGG 1 cut(s) 65
Eco57I CTGAAG 1 cut(s) 240
Eco88I CYCGRG 2 cut(s) 419, 546
EcoRII CCWGG 2 cut(s) 101, 142
EcoT14I CCWWGG 1 cut(s) 65
ErhI CCWWGG 1 cut(s) 65
FaeI CATG 3 cut(s) 69, 452, 536
FatI CATG 3 cut(s) 65, 448, 532
FokI GGATG 1 cut(s) 532
FspBI CTAG 2 cut(s) 44, 108
GsaI CCCAGC 1 cut(s) 53
HapII CCGG 1 cut(s) 455
Hin1II CATG 3 cut(s) 69, 452, 536
HindIII AAGCTT 1 cut(s) 128
HinfI GANTC 5 cut(s) 241, 350, 417, 468, 493
HpaII CCGG 1 cut(s) 455
Hpy188I TCNGA 4 cut(s) 73, 84, 355, 427
Hpy188III TCNNGA 3 cut(s) 257, 367, 472
HpyAV CCTTC 2 cut(s) 18, 230
HpyCH4III ACNGT 2 cut(s) 377, 408
HpyCH4V TGCA 3 cut(s) 155, 271, 488
HpyF3I CTNAG 1 cut(s) 126
Hsp92II CATG 3 cut(s) 69, 452, 536
Kzo9I GATC 3 cut(s) 84, 225, 457
LweI GCATC 3 cut(s) 64, 280, 510
MaeI CTAG 2 cut(s) 44, 108
MalI GATC 3 cut(s) 86, 227, 459
MboI GATC 3 cut(s) 84, 225, 457
MboII GAAGA 3 cut(s) 245, 245, 300
MflI RGATCY 1 cut(s) 457
MlyI GAGTC 1 cut(s) 411
MmeI TCCRAC 1 cut(s) 117
MnlI CCTC 3 cut(s) 182, 261, 502
MseI TTAA 3 cut(s) 56, 96, 177
MspI CCGG 1 cut(s) 455
MspR9I CCNGG 2 cut(s) 103, 144
MvaI CCWGG 2 cut(s) 103, 144
NcoI CCATGG 1 cut(s) 65
NdeII GATC 3 cut(s) 84, 225, 457
NlaIII CATG 3 cut(s) 69, 452, 536
NlaIV GGNNCC 4 cut(s) 6, 141, 318, 459
NspI RCATGY 1 cut(s) 452
PciI ACATGT 1 cut(s) 448
PfeI GAWTC 4 cut(s) 241, 350, 468, 493
PleI GAGTC 1 cut(s) 411
PpsI GAGTC 1 cut(s) 411
PscI ACATGT 1 cut(s) 448
PshAI GACNNNNGTC 1 cut(s) 421
Psp6I CCWGG 2 cut(s) 101, 142
PspFI CCCAGC 1 cut(s) 49
PspGI CCWGG 2 cut(s) 101, 142
PspN4I GGNNCC 4 cut(s) 6, 141, 318, 459
PstI CTGCAG 1 cut(s) 490
PsuI RGATCY 1 cut(s) 457
RsaI GTAC 2 cut(s) 410, 453
RsaNI GTAC 2 cut(s) 409, 452
SaqAI TTAA 3 cut(s) 56, 96, 177
Sau3AI GATC 3 cut(s) 84, 225, 457
ScaI AGTACT 1 cut(s) 410
SchI GAGTC 1 cut(s) 411
ScrFI CCNGG 2 cut(s) 103, 144
SetI ASST 4 cut(s) 10, 40, 132, 193
SfaNI GCATC 3 cut(s) 64, 280, 510
SfcI CTRYAG 1 cut(s) 486
SspMI CTAG 2 cut(s) 44, 108
StyD4I CCNGG 2 cut(s) 101, 142
StyI CCWWGG 1 cut(s) 65
TaaI ACNGT 2 cut(s) 377, 408
TaqI TCGA 3 cut(s) 228, 336, 471
TatI WGTACW 1 cut(s) 408
TfiI GAWTC 4 cut(s) 241, 350, 468, 493
Tru1I TTAA 3 cut(s) 56, 96, 177
Tru9I TTAA 3 cut(s) 56, 96, 177
TscAI CASTG 2 cut(s) 281, 382
TspDTI ATGAA 2 cut(s) 246, 521
TspRI CASTG 2 cut(s) 281, 382
XceI RCATGY 1 cut(s) 452
XspI CTAG 2 cut(s) 44, 108
ZrmI AGTACT 1 cut(s) 410
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.