pycom06g11990

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0001567
Physical Location & Seq
Reverse (-)
17168297 .. 17170764
2468 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g11990.3

Sequence Viewer

Length: 1317 bp
ATGTCCAGCGGGGGACGACAATCTCCAACTTGTTATCTCAGACTCGTCTTTCCTTCTGAAAAAATGGCAAGCTGTTTTCAGGGTTGGGTGGTTTTGTTGGCTATGGTGGTATTGGCATTGAGCACGCCATGCTCACATGCTCTTAGGATTGTCAAAACTAGGACAAGAACTAGTGTTTTTGTCTCCCCTAAGTTTGTGTTGGGACCTGGATCAGTTGCAGACAAGTATTACTACGATATCGACTTCCCGAGAGGTCATATTGCAATCAAGAGCTTCACTGCTGAAGTAATTGACGAGGAAGGGAATCCGATTCCCCTTCACGAAACTTATCTCCATCATTGGGTTGTCGAGGGGTATTATGGCCGCGTAGGTTCTGTGGAGCCGGAGGGGACCCGTGTTGAGGAGCTTCAAAGGTCGGATTTTATTTTTGTGAGAAACAGTGGAGTGTGCCAGAGGACTCTCGGACAGTACTTTGGACTTGGGTCCGAAACACGGAAAACAGATACACATGTTCCGGATCCTTTTGGAATTGAAGTTGGGAATCCAGCAGTGACTCCTGCTGGCTATGAGGAGAGATGGATGCTCAATGTGCACGCCATTGACACACGGGGAGCGGAGAATGGGTTGGGATGCACCGAGTGCAGGTGTGATCTTTATAATGTGTCAACAGATTCTCGAGGCCGGCCTTTGAGGCCAGGGTACGTAGGAGGTTTGTTTTGTTGTTATGATGGTGTACAGTGCAGGGTAAAACAAGGCTTTAATGGTGTCAGGAGAAACCTCTACTTAAGATATACTGTGAAGTGGGTTGATTGGTCTGATTCGATCGTGCCTGTCAAGATTTATATCTTTGATGTCACTGATAAAATGAATCATTCAGCCGGACATGCTATTGAACATGAGTGCCGGGTTGAATATAATGTCGAAGAGTCTTGCAGTGCGACCAGTGATGGGTGCTTTGACAGCCAATCGTCATTGGCTACTATGACGACTGGTGGTTATGTCGTCTATGGTGTAGCTCATCAGCACACGGGGGGGATTGGTTCAACTCTATATGGAGAGGACGGACGGGTTCTGTGTTCGTCAATACCAATTTATGGAAAAGGGAAGGAAGCTGGAGATGAGGCTGGTTATATTGTAGGAATGTCCAGTTGTTATCCTCGACCGGGCTCAATCAGAATAAACGATGGCGAGACTCTGACTCTAGTATCTAATTACAGCAGCACTCAGACGCACACCGGAGTTATGGGTCTCTTCTACATTTTGGTTGCTGACTACCTTCCAACTTCCCCTGTGCTTAGCTTCGACACTGCACTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SURNod19

Protein Analysis

439

Amino Acids

48.19

Weight (kDa)

5.82

Isoelectric Point (pI)

43.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 657
AarI CACCTGC 1 cut(s) 633
Acc36I ACCTGC 1 cut(s) 633
AccB7I CCANNNNNTGG 1 cut(s) 1094
AccBSI CCGCTC 1 cut(s) 614
AccII CGCG 1 cut(s) 366
AccIII TCCGGA 1 cut(s) 514
AciI CCGC 3 cut(s) 9, 364, 614
AclWI GGATC 3 cut(s) 217, 512, 525
AcoI YGGCCR 1 cut(s) 361
AcuI CTGAAG 1 cut(s) 303
AdeI CACNNNGTG 1 cut(s) 639
AfaI GTAC 3 cut(s) 470, 701, 735
AfiI CCNNNNNNNGG 7 cut(s) 340, 400, 492, 642, 948, 1094, 1163
AflII CTTAAG 1 cut(s) 784
AflIII ACRYGT 1 cut(s) 508
AgsI TTSAA 5 cut(s) 410, 533, 893, 911, 1044
AhlI ACTAGT 1 cut(s) 170
AjnI CCWGG 2 cut(s) 205, 694
AluBI AGCT 6 cut(s) 72, 273, 406, 1016, 1112, 1299
AluI AGCT 6 cut(s) 72, 273, 406, 1016, 1112, 1299
Alw21I GWGCWC 2 cut(s) 125, 594
Alw26I GTCTC 3 cut(s) 187, 1184, 1253
Alw44I GTGCAC 1 cut(s) 590
AlwI GGATC 3 cut(s) 217, 512, 525
Ama87I CYCGRG 2 cut(s) 247, 675
Aor13HI TCCGGA 1 cut(s) 514
AoxI GGCC 4 cut(s) 361, 679, 683, 692
ApaLI GTGCAC 1 cut(s) 590
ApeKI GCWGC 1 cut(s) 1218
AspS9I GGNCC 3 cut(s) 203, 390, 483
AsuC2I CCSGG 2 cut(s) 905, 1164
AvaI CYCGRG 2 cut(s) 247, 675
AvaII GGWCC 3 cut(s) 203, 390, 483
BaeGI GKGCMC 1 cut(s) 594
BaeI ACNNNNGTAYC 4 cut(s) 495, 528, 1188, 1221
BamHI GGATCC 1 cut(s) 517
BanII GRGCYC 1 cut(s) 1169
Bbv12I GWGCWC 2 cut(s) 125, 594
BbvI GCAGC 1 cut(s) 1230
BccI CCATC 5 cut(s) 342, 570, 722, 941, 1178
BciT130I CCWGG 2 cut(s) 207, 696
BcnI CCSGG 2 cut(s) 905, 1164
BcoDI GTCTC 3 cut(s) 187, 1184, 1253
BcuI ACTAGT 1 cut(s) 170
BfaI CTAG 3 cut(s) 159, 171, 1202
BfrI CTTAAG 1 cut(s) 784
BfuAI ACCTGC 1 cut(s) 633
BglI GCCNNNNNGGC 1 cut(s) 691
BisI GCNGC 2 cut(s) 364, 1219
BlpI GCTNAGC 1 cut(s) 1295
BlsI GCNGC 2 cut(s) 365, 1220
BmcAI AGTACT 1 cut(s) 470
Bme1390I CCNGG 4 cut(s) 207, 696, 905, 1164
Bme18I GGWCC 3 cut(s) 203, 390, 483
BmeT110I CYCGRG 2 cut(s) 247, 675
BmgT120I GGNCC 3 cut(s) 203, 390, 483
BmiI GGNNCC 6 cut(s) 204, 381, 391, 392, 484, 519
BmrFI CCNGG 4 cut(s) 207, 696, 905, 1164
BmsI GCATC 2 cut(s) 570, 620
BoxI GACNNNNGTC 1 cut(s) 481
BpmI CTGGAG 1 cut(s) 1134
Bpu1102I GCTNAGC 1 cut(s) 1295
BpuMI CCSGG 2 cut(s) 905, 1164
BsaAI YACGTR 1 cut(s) 703
BsaBI GATNNNNATC 1 cut(s) 842
BsaI GGTCTC 1 cut(s) 1253
BsaJI CCNNGG 1 cut(s) 695
BsaWI WCCGGW 2 cut(s) 514, 1235
BsaXI ACNNNNNCTCC 2 cut(s) 608, 638
Bsc4I CCNNNNNNNGG 7 cut(s) 340, 400, 492, 642, 948, 1094, 1163
Bse118I RCCGGY 1 cut(s) 681
Bse1I ACTGG 3 cut(s) 942, 994, 1146
Bse8I GATNNNNATC 1 cut(s) 842
BseAI TCCGGA 1 cut(s) 514
BseBI CCWGG 2 cut(s) 207, 696
BseDI CCNNGG 1 cut(s) 695
BseGI GGATG 2 cut(s) 585, 635
BseJI GATNNNNATC 1 cut(s) 842
BseLI CCNNNNNNNGG 7 cut(s) 340, 400, 492, 642, 948, 1094, 1163
BseMII CTCAG 2 cut(s) 52, 1238
BseNI ACTGG 3 cut(s) 942, 994, 1146
BseRI GAGGAG 2 cut(s) 416, 584
BseSI GKGCMC 1 cut(s) 594
BseXI GCAGC 1 cut(s) 1230
BsgI GTGCAG 3 cut(s) 661, 760, 1293
Bsh1236I CGCG 1 cut(s) 366
Bsh1285I CGRYCG 2 cut(s) 825, 1163
BshFI GGCC 4 cut(s) 363, 681, 685, 694
BsiEI CGRYCG 2 cut(s) 825, 1163
BsiHKAI GWGCWC 2 cut(s) 125, 594
BsiHKCI CYCGRG 2 cut(s) 247, 675
BsiSI CCGG 7 cut(s) 383, 515, 682, 879, 904, 1163, 1236
BslFI GGGAC 3 cut(s) 27, 216, 403
BslI CCNNNNNNNGG 7 cut(s) 340, 400, 492, 642, 948, 1094, 1163
BsmAI GTCTC 3 cut(s) 187, 1184, 1253
BsmFI GGGAC 3 cut(s) 27, 216, 403
BsnI GGCC 4 cut(s) 363, 681, 685, 694
Bso31I GGTCTC 1 cut(s) 1253
BsoBI CYCGRG 2 cut(s) 247, 675
Bsp1286I GDGCHC 3 cut(s) 125, 594, 1169
Bsp13I TCCGGA 1 cut(s) 514
Bsp1407I TGTACA 1 cut(s) 733
Bsp143I GATC 4 cut(s) 209, 517, 649, 822
Bsp1720I GCTNAGC 1 cut(s) 1295
BspACI CCGC 3 cut(s) 9, 364, 614
BspANI GGCC 4 cut(s) 363, 681, 685, 694
BspCNI CTCAG 2 cut(s) 51, 1237
BspEI TCCGGA 1 cut(s) 514
BspFNI CGCG 1 cut(s) 366
BspLI GGNNCC 6 cut(s) 204, 381, 391, 392, 484, 519
BspMI ACCTGC 1 cut(s) 633
BspPI GGATC 3 cut(s) 217, 512, 525
BspTI CTTAAG 1 cut(s) 784
BspTNI GGTCTC 1 cut(s) 1253
BsrBI CCGCTC 1 cut(s) 614
BsrFI RCCGGY 1 cut(s) 681
BsrGI TGTACA 1 cut(s) 733
BsrI ACTGG 3 cut(s) 942, 994, 1146
BssAI RCCGGY 1 cut(s) 681
BssECI CCNNGG 1 cut(s) 695
BssMI GATC 4 cut(s) 209, 517, 649, 822
Bst2UI CCWGG 2 cut(s) 207, 696
Bst4CI ACNGT 4 cut(s) 440, 468, 738, 796
Bst6I CTCTTC 2 cut(s) 918, 1256
BstAFI CTTAAG 1 cut(s) 784
BstAPI GCANNNNNTGC 2 cut(s) 129, 639
BstAUI TGTACA 1 cut(s) 733
BstBAI YACGTR 1 cut(s) 703
BstC8I GCNNGC 5 cut(s) 70, 125, 562, 594, 683
BstDEI CTNAG 5 cut(s) 38, 143, 189, 1224, 1295
BstF5I GGATG 2 cut(s) 585, 635
BstFNI CGCG 1 cut(s) 366
BstKTI GATC 4 cut(s) 212, 520, 652, 825
BstMAI GTCTC 3 cut(s) 187, 1184, 1253
BstMBI GATC 4 cut(s) 209, 517, 649, 822
BstMCI CGRYCG 2 cut(s) 825, 1163
BstMWI GCNNNNNNNGC 6 cut(s) 129, 589, 639, 691, 884, 960
BstNI CCWGG 2 cut(s) 207, 696
BstNSI RCATGY 3 cut(s) 140, 512, 887
BstPAI GACNNNNGTC 1 cut(s) 481
BstSCI CCNGG 4 cut(s) 205, 694, 903, 1162
BstSLI GKGCMC 1 cut(s) 594
BstSNI TACGTA 1 cut(s) 703
BstUI CGCG 1 cut(s) 366
BstV1I GCAGC 1 cut(s) 1230
BstX2I RGATCY 1 cut(s) 517
BstYI RGATCY 1 cut(s) 517
BsuRI GGCC 4 cut(s) 363, 681, 685, 694
BtsCI GGATG 2 cut(s) 585, 635
BtsI GCAGTG 4 cut(s) 276, 555, 940, 1305
BtsIMutI CAGTG 8 cut(s) 276, 445, 555, 743, 855, 940, 949, 1305
BveI ACCTGC 1 cut(s) 633
Cac8I GCNNGC 5 cut(s) 70, 125, 562, 594, 683
Cfr10I RCCGGY 1 cut(s) 681
Cfr13I GGNCC 3 cut(s) 203, 390, 483
CseI GACGC 1 cut(s) 1237
Csp6I GTAC 3 cut(s) 469, 700, 734
CviAII CATG 5 cut(s) 129, 137, 509, 884, 896
CviQI GTAC 3 cut(s) 469, 700, 734
DdeI CTNAG 5 cut(s) 38, 143, 189, 1224, 1295
DpnI GATC 4 cut(s) 211, 519, 651, 824
DpnII GATC 4 cut(s) 209, 517, 649, 822
DraIII CACNNNGTG 1 cut(s) 639
EaeI YGGCCR 1 cut(s) 361
Eam1104I CTCTTC 2 cut(s) 918, 1256
EarI CTCTTC 2 cut(s) 918, 1256
Eco105I TACGTA 1 cut(s) 703
Eco24I GRGCYC 1 cut(s) 1169
Eco31I GGTCTC 1 cut(s) 1253
Eco32I GATATC 1 cut(s) 238
Eco47I GGWCC 3 cut(s) 203, 390, 483
Eco57I CTGAAG 1 cut(s) 303
Eco88I CYCGRG 2 cut(s) 247, 675
EcoO109I RGGNCCY 2 cut(s) 203, 390
EcoRII CCWGG 2 cut(s) 205, 694
EcoRV GATATC 1 cut(s) 238
EcoT38I GRGCYC 1 cut(s) 1169
FaeI CATG 5 cut(s) 132, 140, 512, 887, 899
FaqI GGGAC 3 cut(s) 27, 216, 403
FatI CATG 5 cut(s) 128, 136, 508, 883, 895
FauI CCCGC 1 cut(s) 2
Fnu4HI GCNGC 2 cut(s) 364, 1219
FokI GGATG 2 cut(s) 592, 642
FriOI GRGCYC 1 cut(s) 1169
FseI GGCCGGCC 1 cut(s) 685
Fsp4HI GCNGC 2 cut(s) 364, 1219
FspBI CTAG 3 cut(s) 159, 171, 1202
GluI GCNGC 2 cut(s) 364, 1219
GsuI CTGGAG 1 cut(s) 1134
HaeIII GGCC 4 cut(s) 363, 681, 685, 694
HapII CCGG 7 cut(s) 383, 515, 682, 879, 904, 1163, 1236
HgaI GACGC 1 cut(s) 1237
Hin1II CATG 5 cut(s) 132, 140, 512, 887, 899
HincII GTYRAC 1 cut(s) 666
HindII GTYRAC 1 cut(s) 666
HpaII CCGG 7 cut(s) 383, 515, 682, 879, 904, 1163, 1236
Hpy166II GTNNAC 3 cut(s) 592, 666, 734
Hpy188III TCNNGA 7 cut(s) 247, 268, 320, 515, 675, 769, 835
Hpy8I GTNNAC 3 cut(s) 592, 666, 734
HpyAV CCTTC 5 cut(s) 63, 293, 326, 1099, 1286
HpyCH4III ACNGT 4 cut(s) 440, 468, 738, 796
HpyCH4IV ACGT 1 cut(s) 702
HpyCH4V TGCA 8 cut(s) 218, 263, 592, 633, 642, 741, 933, 1310
HpyF10VI GCNNNNNNNGC 6 cut(s) 129, 589, 639, 691, 884, 960
HpyF3I CTNAG 5 cut(s) 38, 143, 189, 1224, 1295
HpySE526I ACGT 1 cut(s) 702
Hsp92II CATG 5 cut(s) 132, 140, 512, 887, 899
KflI GGGWCCC 1 cut(s) 390
Kpn2I TCCGGA 1 cut(s) 514
KroI GCCGGC 1 cut(s) 681
KroNI GCCGGC 1 cut(s) 683
Kzo9I GATC 4 cut(s) 209, 517, 649, 822
LmnI GCTCC 3 cut(s) 379, 403, 611
Lsp1109I GCAGC 1 cut(s) 1230
LweI GCATC 2 cut(s) 570, 620
MaeI CTAG 3 cut(s) 159, 171, 1202
MaeII ACGT 1 cut(s) 702
MaeIII GTNAC 2 cut(s) 550, 853
MalI GATC 4 cut(s) 211, 519, 651, 824
MbiI CCGCTC 1 cut(s) 614
MboI GATC 4 cut(s) 209, 517, 649, 822
MboII GAAGA 2 cut(s) 935, 1243
MflI RGATCY 1 cut(s) 517
MhlI GDGCHC 3 cut(s) 125, 594, 1169
MluCI AATT 4 cut(s) 288, 528, 1089, 1210
MlyI GAGTC 6 cut(s) 36, 451, 547, 935, 1186, 1192
MmeI TCCRAC 3 cut(s) 50, 396, 1304
MroI TCCGGA 1 cut(s) 514
MroNI GCCGGC 1 cut(s) 681
MseI TTAA 2 cut(s) 759, 785
MspA1I CMGCKG 1 cut(s) 9
MspCI CTTAAG 1 cut(s) 784
MspI CCGG 7 cut(s) 383, 515, 682, 879, 904, 1163, 1236
MspR9I CCNGG 4 cut(s) 207, 696, 905, 1164
MvaI CCWGG 2 cut(s) 207, 696
MvnI CGCG 1 cut(s) 366
MwoI GCNNNNNNNGC 6 cut(s) 129, 589, 639, 691, 884, 960
NaeI GCCGGC 1 cut(s) 683
NciI CCSGG 2 cut(s) 905, 1164
NdeII GATC 4 cut(s) 209, 517, 649, 822
NgoMIV GCCGGC 1 cut(s) 681
NlaIII CATG 5 cut(s) 132, 140, 512, 887, 899
NlaIV GGNNCC 6 cut(s) 204, 381, 391, 392, 484, 519
NmuCI GTSAC 2 cut(s) 550, 853
NspI RCATGY 3 cut(s) 140, 512, 887
PaeR7I CTCGAG 1 cut(s) 675
PaqCI CACCTGC 1 cut(s) 633
PciI ACATGT 1 cut(s) 508
PdiI GCCGGC 1 cut(s) 683
PfeI GAWTC 6 cut(s) 304, 310, 541, 671, 818, 868
PflMI CCANNNNNTGG 1 cut(s) 1094
PkrI GCNGC 2 cut(s) 365, 1220
Ple19I CGATCG 1 cut(s) 825
PleI GAGTC 6 cut(s) 36, 451, 547, 934, 1186, 1192
PpsI GAGTC 6 cut(s) 36, 451, 547, 934, 1186, 1192
Ppu21I YACGTR 1 cut(s) 703
PpuMI RGGWCCY 2 cut(s) 203, 390
PscI ACATGT 1 cut(s) 508
PshAI GACNNNNGTC 1 cut(s) 481
PsiI TTATAA 1 cut(s) 657
Psp5II RGGWCCY 2 cut(s) 203, 390
Psp6I CCWGG 2 cut(s) 205, 694
PspGI CCWGG 2 cut(s) 205, 694
PspN4I GGNNCC 6 cut(s) 204, 381, 391, 392, 484, 519
PspPI GGNCC 3 cut(s) 203, 390, 483
PspPPI RGGWCCY 2 cut(s) 203, 390
PsuI RGATCY 1 cut(s) 517
PvuI CGATCG 1 cut(s) 825
RigI GGCCGGCC 1 cut(s) 685
RsaI GTAC 3 cut(s) 470, 701, 735
RsaNI GTAC 3 cut(s) 469, 700, 734
SaqAI TTAA 2 cut(s) 759, 785
SatI GCNGC 2 cut(s) 364, 1219
Sau3AI GATC 4 cut(s) 209, 517, 649, 822
Sau96I GGNCC 3 cut(s) 203, 390, 483
ScaI AGTACT 1 cut(s) 470
SchI GAGTC 6 cut(s) 36, 451, 547, 935, 1186, 1192
ScrFI CCNGG 4 cut(s) 207, 696, 905, 1164
SduI GDGCHC 3 cut(s) 125, 594, 1169
SfaNI GCATC 2 cut(s) 570, 620
SfiI GGCCNNNNNGGCC 1 cut(s) 691
Sfr274I CTCGAG 1 cut(s) 675
SinI GGWCC 3 cut(s) 203, 390, 483
SlaI CTCGAG 1 cut(s) 675
SmlI CTYRAG 2 cut(s) 675, 784
SmoI CTYRAG 2 cut(s) 675, 784
SnaBI TACGTA 1 cut(s) 703
SpeI ACTAGT 1 cut(s) 170
Sse9I AATT 4 cut(s) 288, 528, 1089, 1210
SsiI CCGC 3 cut(s) 9, 364, 614
SspMI CTAG 3 cut(s) 159, 171, 1202
StyD4I CCNGG 4 cut(s) 205, 694, 903, 1162
TaaI ACNGT 4 cut(s) 440, 468, 738, 796
TaiI ACGT 1 cut(s) 705
TaqI TCGA 7 cut(s) 240, 348, 676, 821, 921, 1159, 1302
TasI AATT 4 cut(s) 288, 528, 1089, 1210
TatI WGTACW 2 cut(s) 468, 733
TauI GCSGC 1 cut(s) 366
TfiI GAWTC 6 cut(s) 304, 310, 541, 671, 818, 868
Tru1I TTAA 2 cut(s) 759, 785
Tru9I TTAA 2 cut(s) 759, 785
TscAI CASTG 8 cut(s) 283, 445, 555, 743, 862, 940, 949, 1312
TseFI GTSAC 2 cut(s) 550, 853
TseI GCWGC 1 cut(s) 1218
Tsp45I GTSAC 2 cut(s) 550, 853
TspDTI ATGAA 1 cut(s) 881
TspGWI ACGGA 2 cut(s) 508, 1077
TspRI CASTG 8 cut(s) 283, 445, 555, 743, 862, 940, 949, 1312
Van91I CCANNNNNTGG 1 cut(s) 1094
Vha464I CTTAAG 1 cut(s) 784
VneI GTGCAC 1 cut(s) 590
VpaK11BI GGWCC 3 cut(s) 203, 390, 483
XceI RCATGY 3 cut(s) 140, 512, 887
XhoI CTCGAG 1 cut(s) 675
XspI CTAG 3 cut(s) 159, 171, 1202
ZrmI AGTACT 1 cut(s) 470
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.