Rmu_sc0000365.1_g000007

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000365.1
OG0001567
Physical Location & Seq
Reverse (-)
22948 .. 25088
2141 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000365.1_g000007.1.cds

Sequence Viewer

Length: 1236 bp
atggcaccttcttttcaaagtttggttcttttgttagctgtgctagtgctgggattaagcctaccacgttcagatgctattcggatcaacaaggttaagaccaggactagcgtttatgtctcccctgagtttgtgttggaaccagggtcagttgctaacaagtatttctataacattcacttcccaagaggtcatattgccatgaagtatttcaatgctgaagtgatcgatgaagaagggaatcctattcctcttcatgagacttatctgcatcattgggttattgaaagatattatgcccaggcaagttatgtggaaccggagctgagtggtttcgaggatattaaagatccggattttaagattgtgagaaatagtggattgtgccagaataatgttcttggtcagtactatggactcgggtcagaaacacgaaagacagatacacatgtaccggatccttttggaatagagattggcaaccctgcagagattcctgctggatatgaggagagatggatgctcaatgttcatgctattgatactcggggtgcagaggataggatgggatgcactgaatgcaggtgtgatctgtataatgtaacaaaagatggacaaggccagccgttgagcccagggtacacagggggtttgcagtgctgttatgatggtacacagtgcagcgtaaaacaaggctataatggtgtcaagagaagcctctacttgagatacactgtgaagtgggttgattggtccgattccattgtgcctgtcaagatttatatctttgatgtcactgatagaacaaatcattcatcaggacccgctgttaaacatgattgccggatcgaatataatgttgagccttgcagtactgtcaatacggtaaatgatcagtgctttgacaatcaacgggcaatggttcctatgccaactggtggttatatcgtctatggtgttgcccatcagcacactgggggaagtggctcaactctgtatggagaggacggacgggttctctgttcatcaataccgatatatgggcaaagcgaggaagtaggagacgaggctggttacattgtgggaatgtcaacttgctatccacatcctggctctgtcaaaataaaggatggggagactctggttctggcatctaattacagcagctcgcagccgcacacaggagtcatgggcctcttctacattttggttgcagagtatcagaaaaatatttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SURNod19

Protein Analysis

411

Amino Acids

45.69

Weight (kDa)

5.38

Isoelectric Point (pI)

41.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 573
Acc36I ACCTGC 1 cut(s) 573
AccB1I GGYRCC 1 cut(s) 4
AccB7I CCANNNNNTGG 2 cut(s) 938, 1109
AccIII TCCGGA 1 cut(s) 352
AciI CCGC 2 cut(s) 825, 1175
AclWI GGATC 5 cut(s) 92, 344, 452, 465, 854
AcuI CTGAAG 1 cut(s) 240
AfaI GTAC 5 cut(s) 410, 453, 641, 673, 874
AfiI CCNNNNNNNGG 4 cut(s) 938, 1040, 1109, 1181
AflIII ACRYGT 1 cut(s) 448
AgsI TTSAA 3 cut(s) 17, 214, 287
AjnI CCWGG 5 cut(s) 101, 142, 300, 634, 1108
AluBI AGCT 3 cut(s) 38, 325, 1167
AluI AGCT 3 cut(s) 38, 325, 1167
Alw26I GTCTC 4 cut(s) 124, 254, 1056, 1130
AlwI GGATC 5 cut(s) 92, 344, 452, 465, 854
Ama87I CYCGRG 2 cut(s) 419, 546
Aor13HI TCCGGA 1 cut(s) 352
AoxI GGCC 2 cut(s) 619, 1192
ApeKI GCWGC 3 cut(s) 681, 1164, 1171
Asp700I GAANNNNTTC 1 cut(s) 209
AspS9I GGNCC 3 cut(s) 753, 821, 1192
AvaI CYCGRG 2 cut(s) 419, 546
AvaII GGWCC 2 cut(s) 753, 821
BaeI ACNNNNGTAYC 4 cut(s) 435, 435, 468, 468
BamHI GGATCC 1 cut(s) 457
BanI GGYRCC 1 cut(s) 4
BanII GRGCYC 1 cut(s) 635
BbvI GCAGC 3 cut(s) 693, 1176, 1183
BccI CCATC 6 cut(s) 510, 559, 605, 662, 972, 1124
BceAI ACGGC 1 cut(s) 610
BciT130I CCWGG 5 cut(s) 103, 144, 302, 636, 1110
BclI TGATCA 1 cut(s) 892
BcoDI GTCTC 4 cut(s) 124, 254, 1056, 1130
BfaI CTAG 2 cut(s) 44, 108
BfmI CTRYAG 1 cut(s) 486
BfuAI ACCTGC 1 cut(s) 573
BisI GCNGC 4 cut(s) 682, 1165, 1172, 1175
BlsI GCNGC 4 cut(s) 683, 1166, 1173, 1176
BmcAI AGTACT 2 cut(s) 410, 874
Bme1390I CCNGG 5 cut(s) 103, 144, 302, 636, 1110
Bme18I GGWCC 2 cut(s) 753, 821
BmeT110I CYCGRG 2 cut(s) 419, 546
BmgT120I GGNCC 3 cut(s) 753, 821, 1192
BmiI GGNNCC 6 cut(s) 6, 141, 318, 459, 823, 924
BmrFI CCNGG 5 cut(s) 103, 144, 302, 636, 1110
BmrI ACTGGG 1 cut(s) 984
BmsI GCATC 5 cut(s) 64, 280, 510, 560, 1160
BmuI ACTGGG 1 cut(s) 984
BoxI GACNNNNGTC 1 cut(s) 421
BpuEI CTTGAG 1 cut(s) 745
Bsa29I ATCGAT 1 cut(s) 228
BsaBI GATNNNNATC 1 cut(s) 782
BsaJI CCNNGG 4 cut(s) 143, 300, 634, 635
BsaWI WCCGGW 3 cut(s) 319, 352, 454
Bsc4I CCNNNNNNNGG 4 cut(s) 938, 1040, 1109, 1181
Bse1I ACTGG 2 cut(s) 940, 979
Bse3DI GCAATG 1 cut(s) 924
Bse8I GATNNNNATC 1 cut(s) 782
BseAI TCCGGA 1 cut(s) 352
BseBI CCWGG 5 cut(s) 103, 144, 302, 636, 1110
BseCI ATCGAT 1 cut(s) 228
BseDI CCNNGG 4 cut(s) 143, 300, 634, 635
BseGI GGATG 5 cut(s) 525, 570, 575, 1105, 1135
BseJI GATNNNNATC 1 cut(s) 782
BseLI CCNNNNNNNGG 4 cut(s) 938, 1040, 1109, 1181
BseMI GCAATG 1 cut(s) 924
BseMII CTCAG 2 cut(s) 117, 317
BseNI ACTGG 2 cut(s) 940, 979
BseRI GAGGAG 1 cut(s) 524
BseXI GCAGC 3 cut(s) 693, 1176, 1183
BseYI CCCAGC 1 cut(s) 49
BsgI GTGCAG 2 cut(s) 573, 700
BshFI GGCC 2 cut(s) 621, 1194
BshNI GGYRCC 1 cut(s) 4
BshVI ATCGAT 1 cut(s) 228
BsiHKCI CYCGRG 2 cut(s) 419, 546
BsiSI CCGG 4 cut(s) 320, 353, 455, 844
BslI CCNNNNNNNGG 4 cut(s) 938, 1040, 1109, 1181
BsmAI GTCTC 4 cut(s) 124, 254, 1056, 1130
BsmBI CGTCTC 1 cut(s) 1056
BsmI GAATGC 1 cut(s) 584
BsnI GGCC 2 cut(s) 621, 1194
BsoBI CYCGRG 2 cut(s) 419, 546
Bsp1286I GDGCHC 1 cut(s) 635
Bsp13I TCCGGA 1 cut(s) 352
Bsp143I GATC 7 cut(s) 84, 225, 349, 457, 589, 846, 892
BspACI CCGC 2 cut(s) 825, 1175
BspANI GGCC 2 cut(s) 621, 1194
BspCNI CTCAG 2 cut(s) 118, 318
BspDI ATCGAT 1 cut(s) 228
BspEI TCCGGA 1 cut(s) 352
BspHI TCATGA 1 cut(s) 256
BspLI GGNNCC 6 cut(s) 6, 141, 318, 459, 823, 924
BspMAI CTGCAG 1 cut(s) 490
BspMI ACCTGC 1 cut(s) 573
BspPI GGATC 5 cut(s) 92, 344, 452, 465, 854
BspT107I GGYRCC 1 cut(s) 4
BsrDI GCAATG 1 cut(s) 924
BsrI ACTGG 2 cut(s) 940, 979
BssECI CCNNGG 4 cut(s) 143, 300, 634, 635
BssMI GATC 7 cut(s) 84, 225, 349, 457, 589, 846, 892
Bst2UI CCWGG 5 cut(s) 103, 144, 302, 636, 1110
Bst4CI ACNGT 4 cut(s) 678, 736, 877, 886
Bst6I CTCTTC 2 cut(s) 258, 1202
BstAPI GCANNNNNTGC 1 cut(s) 579
BstC8I GCNNGC 2 cut(s) 623, 1169
BstDEI CTNAG 2 cut(s) 126, 326
BstF5I GGATG 5 cut(s) 525, 570, 575, 1105, 1135
BstKTI GATC 7 cut(s) 87, 228, 352, 460, 592, 849, 895
BstMAI GTCTC 4 cut(s) 124, 254, 1056, 1130
BstMBI GATC 7 cut(s) 84, 225, 349, 457, 589, 846, 892
BstMWI GCNNNNNNNGC 1 cut(s) 579
BstNI CCWGG 5 cut(s) 103, 144, 302, 636, 1110
BstNSI RCATGY 1 cut(s) 452
BstPAI GACNNNNGTC 1 cut(s) 421
BstSCI CCNGG 5 cut(s) 101, 142, 300, 634, 1108
BstSFI CTRYAG 1 cut(s) 486
BstV1I GCAGC 3 cut(s) 693, 1176, 1183
BstX2I RGATCY 2 cut(s) 349, 457
BstYI RGATCY 2 cut(s) 349, 457
Bsu15I ATCGAT 1 cut(s) 228
BsuRI GGCC 2 cut(s) 621, 1194
BsuTUI ATCGAT 1 cut(s) 228
BtsCI GGATG 5 cut(s) 525, 570, 575, 1105, 1135
BtsI GCAGTG 1 cut(s) 662
BtsIMutI CAGTG 7 cut(s) 573, 662, 683, 732, 795, 902, 972
BveI ACCTGC 1 cut(s) 573
Cac8I GCNNGC 2 cut(s) 623, 1169
CciI TCATGA 1 cut(s) 256
Cfr13I GGNCC 3 cut(s) 753, 821, 1192
ClaI ATCGAT 1 cut(s) 228
Csp6I GTAC 5 cut(s) 409, 452, 640, 672, 873
CspCI CAANNNNNGTGG 2 cut(s) 294, 329
CviAII CATG 6 cut(s) 202, 257, 449, 533, 836, 1189
CviQI GTAC 5 cut(s) 409, 452, 640, 672, 873
DdeI CTNAG 2 cut(s) 126, 326
DpnI GATC 7 cut(s) 86, 227, 351, 459, 591, 848, 894
DpnII GATC 7 cut(s) 84, 225, 349, 457, 589, 846, 892
Eam1104I CTCTTC 2 cut(s) 258, 1202
EarI CTCTTC 2 cut(s) 258, 1202
Eco24I GRGCYC 1 cut(s) 635
Eco47I GGWCC 2 cut(s) 753, 821
Eco57I CTGAAG 1 cut(s) 240
Eco88I CYCGRG 2 cut(s) 419, 546
EcoO109I RGGNCCY 1 cut(s) 821
EcoRII CCWGG 5 cut(s) 101, 142, 300, 634, 1108
EcoT38I GRGCYC 1 cut(s) 635
Esp3I CGTCTC 1 cut(s) 1056
FaeI CATG 6 cut(s) 205, 260, 452, 536, 839, 1192
FatI CATG 6 cut(s) 201, 256, 448, 532, 835, 1188
FauI CCCGC 1 cut(s) 832
FbaI TGATCA 1 cut(s) 892
Fnu4HI GCNGC 4 cut(s) 682, 1165, 1172, 1175
FokI GGATG 5 cut(s) 532, 577, 582, 1092, 1142
FriOI GRGCYC 1 cut(s) 635
Fsp4HI GCNGC 4 cut(s) 682, 1165, 1172, 1175
FspBI CTAG 2 cut(s) 44, 108
GluI GCNGC 4 cut(s) 682, 1165, 1172, 1175
GsaI CCCAGC 1 cut(s) 53
HaeIII GGCC 2 cut(s) 621, 1194
HapII CCGG 4 cut(s) 320, 353, 455, 844
Hin1II CATG 6 cut(s) 205, 260, 452, 536, 839, 1192
HincII GTYRAC 1 cut(s) 1092
HindII GTYRAC 1 cut(s) 1092
HinfI GANTC 6 cut(s) 241, 417, 493, 758, 1138, 1185
HpaII CCGG 4 cut(s) 320, 353, 455, 844
Hpy166II GTNNAC 3 cut(s) 642, 674, 1092
Hpy188I TCNGA 5 cut(s) 73, 84, 427, 757, 1224
Hpy188III TCNNGA 5 cut(s) 257, 353, 709, 775, 819
Hpy8I GTNNAC 3 cut(s) 642, 674, 1092
HpyAV CCTTC 2 cut(s) 18, 230
HpyCH4III ACNGT 4 cut(s) 678, 736, 877, 886
HpyCH4IV ACGT 1 cut(s) 67
HpyCH4V TGCA 9 cut(s) 271, 488, 554, 573, 582, 655, 681, 870, 1214
HpyF10VI GCNNNNNNNGC 1 cut(s) 579
HpyF3I CTNAG 2 cut(s) 126, 326
HpySE526I ACGT 1 cut(s) 67
Hsp92II CATG 6 cut(s) 205, 260, 452, 536, 839, 1192
Kpn2I TCCGGA 1 cut(s) 352
Ksp22I TGATCA 1 cut(s) 892
Kzo9I GATC 7 cut(s) 84, 225, 349, 457, 589, 846, 892
LmnI GCTCC 1 cut(s) 322
Lsp1109I GCAGC 3 cut(s) 693, 1176, 1183
LweI GCATC 5 cut(s) 64, 280, 510, 560, 1160
MaeI CTAG 2 cut(s) 44, 108
MaeII ACGT 1 cut(s) 67
MaeIII GTNAC 3 cut(s) 601, 793, 1073
MalI GATC 7 cut(s) 86, 227, 351, 459, 591, 848, 894
MboI GATC 7 cut(s) 84, 225, 349, 457, 589, 846, 892
MboII GAAGA 3 cut(s) 245, 245, 1189
MflI RGATCY 2 cut(s) 349, 457
MhlI GDGCHC 1 cut(s) 635
MluCI AATT 1 cut(s) 1156
MlyI GAGTC 3 cut(s) 411, 1132, 1194
MmeI TCCRAC 1 cut(s) 117
MroI TCCGGA 1 cut(s) 352
MroXI GAANNNNTTC 1 cut(s) 209
MseI TTAA 5 cut(s) 56, 96, 345, 360, 831
MspA1I CMGCKG 1 cut(s) 827
MspI CCGG 4 cut(s) 320, 353, 455, 844
MspR9I CCNGG 5 cut(s) 103, 144, 302, 636, 1110
Mva1269I GAATGC 1 cut(s) 584
MvaI CCWGG 5 cut(s) 103, 144, 302, 636, 1110
MwoI GCNNNNNNNGC 1 cut(s) 579
NdeII GATC 7 cut(s) 84, 225, 349, 457, 589, 846, 892
NlaIII CATG 6 cut(s) 205, 260, 452, 536, 839, 1192
NlaIV GGNNCC 6 cut(s) 6, 141, 318, 459, 823, 924
NmuCI GTSAC 1 cut(s) 793
NspI RCATGY 1 cut(s) 452
PagI TCATGA 1 cut(s) 256
PaqCI CACCTGC 1 cut(s) 573
PasI CCCWGGG 1 cut(s) 635
PciI ACATGT 1 cut(s) 448
PctI GAATGC 1 cut(s) 584
PdmI GAANNNNTTC 1 cut(s) 209
PfeI GAWTC 3 cut(s) 241, 493, 758
PflMI CCANNNNNTGG 2 cut(s) 938, 1109
PkrI GCNGC 4 cut(s) 683, 1166, 1173, 1176
PleI GAGTC 3 cut(s) 411, 1132, 1193
PpsI GAGTC 3 cut(s) 411, 1132, 1193
PpuMI RGGWCCY 1 cut(s) 821
PscI ACATGT 1 cut(s) 448
PshAI GACNNNNGTC 1 cut(s) 421
Psp5II RGGWCCY 1 cut(s) 821
Psp6I CCWGG 5 cut(s) 101, 142, 300, 634, 1108
PspFI CCCAGC 1 cut(s) 49
PspGI CCWGG 5 cut(s) 101, 142, 300, 634, 1108
PspN4I GGNNCC 6 cut(s) 6, 141, 318, 459, 823, 924
PspPI GGNCC 3 cut(s) 753, 821, 1192
PspPPI RGGWCCY 1 cut(s) 821
PstI CTGCAG 1 cut(s) 490
PsuI RGATCY 2 cut(s) 349, 457
RsaI GTAC 5 cut(s) 410, 453, 641, 673, 874
RsaNI GTAC 5 cut(s) 409, 452, 640, 672, 873
SaqAI TTAA 5 cut(s) 56, 96, 345, 360, 831
SatI GCNGC 4 cut(s) 682, 1165, 1172, 1175
Sau3AI GATC 7 cut(s) 84, 225, 349, 457, 589, 846, 892
Sau96I GGNCC 3 cut(s) 753, 821, 1192
ScaI AGTACT 2 cut(s) 410, 874
SchI GAGTC 3 cut(s) 411, 1132, 1194
ScrFI CCNGG 5 cut(s) 103, 144, 302, 636, 1110
SduI GDGCHC 1 cut(s) 635
SetI ASST 8 cut(s) 10, 40, 70, 96, 193, 327, 587, 1169
SfaNI GCATC 5 cut(s) 64, 280, 510, 560, 1160
SfcI CTRYAG 1 cut(s) 486
SinI GGWCC 2 cut(s) 753, 821
SmlI CTYRAG 1 cut(s) 724
SmoI CTYRAG 1 cut(s) 724
Sse9I AATT 1 cut(s) 1156
SsiI CCGC 2 cut(s) 825, 1175
SspI AATATT 1 cut(s) 1231
SspMI CTAG 2 cut(s) 44, 108
StyD4I CCNGG 5 cut(s) 101, 142, 300, 634, 1108
TaaI ACNGT 4 cut(s) 678, 736, 877, 886
TaiI ACGT 1 cut(s) 70
TaqI TCGA 3 cut(s) 228, 336, 849
TasI AATT 1 cut(s) 1156
TatI WGTACW 2 cut(s) 408, 872
TauI GCSGC 1 cut(s) 1177
TfiI GAWTC 3 cut(s) 241, 493, 758
Tru1I TTAA 5 cut(s) 56, 96, 345, 360, 831
Tru9I TTAA 5 cut(s) 56, 96, 345, 360, 831
TscAI CASTG 7 cut(s) 580, 662, 683, 739, 802, 902, 979
TseFI GTSAC 1 cut(s) 793
TseI GCWGC 3 cut(s) 681, 1164, 1171
Tsp45I GTSAC 1 cut(s) 793
TspDTI ATGAA 6 cut(s) 218, 245, 246, 521, 804, 1014
TspGWI ACGGA 1 cut(s) 1023
TspRI CASTG 7 cut(s) 580, 662, 683, 739, 802, 902, 979
Van91I CCANNNNNTGG 2 cut(s) 938, 1109
VpaK11BI GGWCC 2 cut(s) 753, 821
XceI RCATGY 1 cut(s) 452
XcmI CCANNNNNNNNNTGG 1 cut(s) 971
XmnI GAANNNNTTC 1 cut(s) 209
XspI CTAG 2 cut(s) 44, 108
ZrmI AGTACT 2 cut(s) 410, 874
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.