Rorug04G0101400

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0001567
Physical Location & Seq
Forward (+)
15845086 .. 15848376
3291 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0101400.1

Sequence Viewer

Length: 3291 bp
ATGCCTAAGCTTTCCTCTACACTCTTCTACACCAAACCCAGCCGATCCTTGTCTTCATCATCTTCTTCTTCTCCTCGTAACAGTCTTCCAAAACTCCCACCTCTTCAAACTTTACTCAAACGTGGCTTCACTCCCACTCTCAATTCCATCATCCAATTCCTTCTCTTTCTTTCACATACCCGCAGATTCAACACAGTCATCCACTTCTTCTCTCAAATGGAGTCGAACCAAATCAAAGGCAACTCCCAAACTCGCTCAATTCTCACATGGGCTCTCCTTAAACTGCACAAATATGAAGATGCAGCGCATTTCATGAGGACCCAGATGGTCAAAGCTTCAAATTTTCCGAGGAATCGCATGTGGGACACTCTCATTCAAGGTCTCTGTATCAACCAGAAAGACCCAGATAAGGCTTTGTTGGTATTACGGGATTGCTTGAGAAAATATGGTACCTTTCCTTCTTCTTTCACTTTTTGCTCGTTAATTTATAGATTTAGCTCTATGGGGGATATGAGTAAGGCAATTGAGGTTGTGGAGTTGATGACAGATGAGAAAATCAACTACCCATTTAACAATTTTGTTTGTAGTTCAGTGATTTCTGGGTTTTGTAAAATTGGAAAGCCAGAAATTGCTGTTGAGTTTTTTGAGAATGCCCTAAAGTCTGGAGCTTTGCAGCCTAATGTTGTGGTATACACAGCACTTGTAGGTGCTCTTTGTAAATTAGGAAGAGTTAGTGAGGTTTGTGATTTAGTTTGTAAAATGGAGAAGGAAGGATTGGCATTCGATGTTGTTTTCTATAGTAGTTGGATTTGTGGTTATATTTCGGAAGGGAGTCTAATGGAGGTGTTTCGGAAGAAGAGACAGATGGTAGATAAAGGCATAAGACCAGATACAGTTAGCTATACTATACTCGTAGATGGGTTTTCGAAGCTTGGAGATGTGGAAAAGGCAATTGGCTTTTTGAAAAAGATGAGGAAAGGTGGGCTAGAACCCAGTTTGATTACTTATACCGCCATCATGTTGGGATTCTGCGAGAAAGGAAAACTGGAGGAGGCATTTGCTATTTACAAGATGGTCGAAGATTTGGAAATTGAAGTTGATGAATTTATGTATGCTACTTTAATTCACGGGTTTTGTATGAGAGGGGATCTTGATGGTGTTTTTCGTCTGCTAGATGAAATGGAAAAGAAGGGGATTAATCCAAGCATTGTTACATATAATACGGTAATTAATGGATTATGCAAATTTGGGAGGACTGCGGAGGCTGAGAAGATCTCAAAGGGCATATCTGGAGATACCATTACATATAGTACATTGCTACATGGGTATATTGAGGAAGAAAATACCTCTGGGATTTTGGAAACCAAGAGGAGATTGGAGGAAGCTGGAGTCTTTATGGATGTTGTTATGTGTAATATACTTATTAAAGCGCTATTCATGGTGGGGGCATTTGAGGATGCTTACATACTGTACAAGGGAATGCCAGAGAAGGGTTTGACTGCAAATTCCATTACATACTGTACAATGATTGATGGGTACTGTAAAGTTGGTAGAATTGATGAGGCACTTGAGATATTTGATGAGTTCGGAAGGACACCACTTTCCTCAGTTGCATGTTATAATTGTATAATAAATTGGCTCTGTAAGCAGGGCATGGTAGATATGGCCACGGAGGTGTTTATTGAACTTAATCGGAAAAGCTTAACTTTGGATGATGGTATCTGCGAAATGCTTTTGAAGGCAACTTTTAAACAAAAAAGTGCAACTGGAGTTTTAAATTTGGTTCACAGAGTGGAAAATTTGAGGCCAGGTATGTATGATGTTATGAGCAATGTTGCAATCAGTTTCTTGTGCAAGAGAGGGTTTCATGAGTCTGCATTTGAAGTGTATGCAGTGATGAGGAGGGAAGGGTCGGTTGCAACGAGAAAAACTTATTATTCAATTTTAGAAGGTCTAATTAATGATGGAAAAGAGTGGCTAACTCTGCCTCTTTTAAACATCTTTCTAAAAGAATATGGACTAGTTGAACCTAAAGTAAGCCAGATTCTTGCTTACCACATGTGCCTGAAGGATGTCAATGATGCTTTCTGCTTTTTAGAAAAGATCAAGGACAGACCTACAGCCATTACCTTGCCTATTTCTCTTTTCAAGACACTTATGAAGAAGGGTAAAGTTTTGGTTGCATATCAGCTTTTCATGGAGGCTGAAGATAGTGTACCCGTTCTGGATGCATTTGATTATTCGCACATGGTTGATGGCCTTTGCAAGGGAGGATATATCAGTGAGGCACTAGATCTCTGTGGTTTTGCTAAATCTAAGGGAATCACCCTGAATATTATTGCTTATAATTCAGTTATAAATGGATTGTGCCACCAAGGTCATCTTGTTGATGCATTTCGGCTATTTGATTCATTAGAGAGAATTAATTTGGTACCCTCAGAAATCACTTATGCTACATTGATTGATTCCCTACGTAGAGAGGGGTTTCTGCTTGATGCAAAGCAATTATTTGAAAGCATGGTCCTCAAGGGGTTTAAACCGAATACACATGTATATAACTCTATTATTGATGGTTTTTGCAAAATTGGACATATGGAGGATGCCTTGAAACTTCTTTGTGAATTGGACATGAAATCTCTTAGGCCTGATGAATTCACTGTTACTATTGTCATCAATGGCTTTTGCCAAAAGGGTGATATGGAAGGGGCTCTAAATTTCTTCACTGAGTTCAAAAGAAATGGTACATCACCTGATTTTTTGGGTTTCTTAAATTTGATAAGAGGTTTATGTTCCAAGGGAAGGATGGAAGAAGCCAGAAGTATCTTGAGAGAAATGCTTCAGTCTCAGTCTGTCCTGGAGCTAATAAATAGAGTTGATGTTGAGCTGGAAACAGAGTCATTGGAAAGCTTGCTTGTTTCACTGTGCGAGCAAGGAAGTATCCAAGAAGCAGTGACTGTCCTTAATGAAATCGCGTCCATGTTTTTCCCTGTTCGGAGTTCATCTATTGATTGCCATCAATCTCATAAACTACAGAAGCATTGTGACAGCGAGGATCCTAAAACAGTTACTTCAAAATCTGTAACTTCCATCAATGCAGATTCGGGTATTCAGTTTTCTGGTCTGAAGAAAGTAGAGAAGGTGGCAAAAACTTGTGATGTTATAGGGAGTAGGTCTCAGTTTCATGACTTTGATTATTACTATAAGCAAATTGCTTCACTGTGTTCGATAGGGGAGCTACAAAAGGCTAGTGAATTAGTAAAGGAAATAGTTTCTAATTTGGGCAAGAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SURNod19

Protein Analysis

1096

Amino Acids

123.18

Weight (kDa)

6.38

Isoelectric Point (pI)

37.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MRP-S27 PF10037 128 - 190 2.5e-06 Mitochondrial 28S ribosomal protein S27
PPR_2 PF13041 226 - 264 1.4e-06 PPR repeat family
PPR_2 PF13041 262 - 310 9.5e-09 PPR repeat family
PPR_long PF17177 278 - 391 4e-10 Pentacotripeptide-repeat region of PRORP
PPR_3 PF13812 286 - 340 4e-10 Pentatricopeptide repeat domain
PPR_1 PF12854 292 - 325 1.6e-08 PPR repeat
PPR_2 PF13041 297 - 344 4.3e-12 PPR repeat family
PPR PF01535 299 - 328 1.7e-06 PPR repeat
PPR_1 PF12854 328 - 355 7.6e-06 PPR repeat
PPR_2 PF13041 331 - 379 1.7e-08 PPR repeat family
TPR_24 PF23276 352 - 492 5.3e-08 Fungal tetratrico peptide repeats
PPR_3 PF13812 358 - 411 1.4e-11 Pentatricopeptide repeat domain
PPR_1 PF12854 364 - 395 2.4e-07 PPR repeat
PPR_2 PF13041 367 - 415 5e-16 PPR repeat family
PPR PF01535 370 - 399 7.7e-06 PPR repeat
PPR_1 PF12854 397 - 424 1.1e-09 PPR repeat
PPR_2 PF13041 467 - 515 9.3e-13 PPR repeat family
PPR_1 PF12854 497 - 528 2.3e-11 PPR repeat
PPR_2 PF13041 502 - 528 8.6e-06 PPR repeat family
PPR PF01535 504 - 528 9.5e-08 PPR repeat
PPR_2 PF13041 536 - 571 1.1e-06 PPR repeat family
PPR_2 PF13041 747 - 791 8.4e-07 PPR repeat family
PPR_1 PF12854 773 - 804 6.4e-08 PPR repeat
PPR_2 PF13041 778 - 824 1.3e-11 PPR repeat family
PPR_2 PF13041 812 - 861 2.1e-10 PPR repeat family
PPR_1 PF12854 843 - 874 5.5e-10 PPR repeat
PPR_2 PF13041 847 - 896 1.5e-15 PPR repeat family
PPR_1 PF12854 879 - 909 6.4e-07 PPR repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 1620, 2346, 2357
Acc65I GGTACC 2 cut(s) 449, 2431
AccB1I GGYRCC 2 cut(s) 449, 2431
AccI GTMKAC 1 cut(s) 690
AccII CGCG 1 cut(s) 2972
AciI CCGC 3 cut(s) 181, 1011, 1259
AclWI GGATC 4 cut(s) 39, 1155, 3047, 3060
AcoI YGGCCR 1 cut(s) 1665
AcsI RAATTY 9 cut(s) 340, 1103, 1244, 1504, 1777, 1798, 2651, 2713, 2770
AcuI CTGAAG 4 cut(s) 2087, 2226, 2822, 3143
AdeI CACNNNGTG 1 cut(s) 1792
AfaI GTAC 8 cut(s) 451, 1312, 1472, 1522, 1538, 2217, 2433, 2743
AfeI AGCGCT 1 cut(s) 1431
AfiI CCNNNNNNNGG 4 cut(s) 409, 1490, 2266, 2799
AflIII ACRYGT 2 cut(s) 2058, 2548
AhlI ACTAGT 1 cut(s) 2020
AjnI CCWGG 2 cut(s) 1807, 2853
AjuI GAANNNNNNNTTGG 4 cut(s) 758, 790, 936, 968
AleI CACNNNNGTG 1 cut(s) 1673
Alw21I GWGCWC 1 cut(s) 712
Alw26I GTCTC 4 cut(s) 386, 853, 2847, 3177
AlwI GGATC 4 cut(s) 39, 1155, 3047, 3060
AlwNI CAGNNNCTG 1 cut(s) 2954
Aor51HI AGCGCT 1 cut(s) 1431
AoxI GGCC 4 cut(s) 1665, 1805, 2257, 2642
ApeKI GCWGC 2 cut(s) 302, 673
ApoI RAATTY 9 cut(s) 340, 1103, 1244, 1504, 1777, 1798, 2651, 2713, 2770
AseI ATTAAT 4 cut(s) 1197, 1230, 1959, 2424
Asp700I GAANNNNTTC 1 cut(s) 2835
Asp718I GGTACC 2 cut(s) 449, 2431
AspLEI GCGC 2 cut(s) 307, 1432
AspS9I GGNCC 2 cut(s) 318, 2521
AsuHPI GGTGA 3 cut(s) 2317, 2705, 2739
AsuII TTCGAA 1 cut(s) 926
AvaII GGWCC 2 cut(s) 318, 2521
BalI TGGCCA 1 cut(s) 1667
BamHI GGATCC 1 cut(s) 3052
BanI GGYRCC 2 cut(s) 449, 2431
BanII GRGCYC 2 cut(s) 274, 2710
BarI GAAGNNNNNNTAC 4 cut(s) 442, 474, 2199, 2231
BbsI GAAGAC 2 cut(s) 45, 77
Bbv12I GWGCWC 1 cut(s) 712
BbvI GCAGC 2 cut(s) 314, 685
BciT130I CCWGG 2 cut(s) 1809, 2855
BciVI GTATCC 1 cut(s) 2948
BcoDI GTCTC 4 cut(s) 386, 853, 2847, 3177
BcuI ACTAGT 1 cut(s) 2020
BfaI CTAG 5 cut(s) 986, 1172, 2021, 2291, 3246
BfmI CTRYAG 3 cut(s) 796, 2118, 3029
BfoI RGCGCY 1 cut(s) 1433
BfuI GTATCC 1 cut(s) 2948
BglII AGATCT 2 cut(s) 1272, 2293
BisI GCNGC 2 cut(s) 303, 674
BlsI GCNGC 2 cut(s) 304, 675
Bme1390I CCNGG 2 cut(s) 1809, 2855
Bme18I GGWCC 2 cut(s) 318, 2521
BmgT120I GGNCC 2 cut(s) 318, 2521
BmiI GGNNCC 4 cut(s) 320, 451, 2433, 3054
BmrFI CCNGG 2 cut(s) 1809, 2855
BmrI ACTGGG 1 cut(s) 987
BmsI GCATC 7 cut(s) 289, 1447, 2071, 2218, 2380, 2485, 2590
BmuI ACTGGG 1 cut(s) 987
BpiI GAAGAC 2 cut(s) 45, 77
BplI GAGNNNNNCTC 4 cut(s) 1259, 1291, 3157, 3189
BpmI CTGGAG 6 cut(s) 684, 1067, 1311, 1407, 1788, 2876
Bpu10I CCTNAGC 1 cut(s) 6
Bpu14I TTCGAA 1 cut(s) 926
BpuEI CTTGAG 4 cut(s) 457, 1589, 2510, 2845
BsaAI YACGTR 1 cut(s) 2474
BsaBI GATNNNNATC 1 cut(s) 3012
BsaI GGTCTC 2 cut(s) 386, 3177
BsaJI CCNNGG 4 cut(s) 347, 1668, 2374, 2793
Bsc4I CCNNNNNNNGG 4 cut(s) 409, 1490, 2266, 2799
Bse1I ACTGG 3 cut(s) 993, 1050, 1771
Bse3DI GCAATG 2 cut(s) 1313, 1837
Bse8I GATNNNNATC 1 cut(s) 3012
BseBI CCWGG 2 cut(s) 1809, 2855
BseDI CCNNGG 4 cut(s) 347, 1668, 2374, 2793
BseGI GGATG 9 cut(s) 150, 198, 1405, 1462, 1717, 2077, 2233, 2605, 2808
BseJI GATNNNNATC 1 cut(s) 3012
BseLI CCNNNNNNNGG 4 cut(s) 409, 1490, 2266, 2799
BseMI GCAATG 2 cut(s) 1313, 1837
BseMII CTCAG 6 cut(s) 1257, 1620, 2451, 2715, 2858, 3188
BseNI ACTGG 3 cut(s) 993, 1050, 1771
BseRI GAGGAG 4 cut(s) 63, 1064, 1384, 1915
BseXI GCAGC 2 cut(s) 314, 685
BseYI CCCAGC 1 cut(s) 38
BsgI GTGCAG 1 cut(s) 269
Bsh1236I CGCG 1 cut(s) 2972
BshFI GGCC 4 cut(s) 1667, 1807, 2259, 2644
BshNI GGYRCC 2 cut(s) 449, 2431
BsiHKAI GWGCWC 1 cut(s) 712
BslFI GGGAC 1 cut(s) 377
BslI CCNNNNNNNGG 4 cut(s) 409, 1490, 2266, 2799
BsmAI GTCTC 4 cut(s) 386, 853, 2847, 3177
BsmFI GGGAC 1 cut(s) 377
BsmI GAATGC 3 cut(s) 655, 779, 1485
BsnI GGCC 4 cut(s) 1667, 1807, 2259, 2644
Bso31I GGTCTC 2 cut(s) 386, 3177
Bsp119I TTCGAA 1 cut(s) 926
Bsp1286I GDGCHC 3 cut(s) 274, 712, 2710
Bsp1407I TGTACA 2 cut(s) 1470, 1520
Bsp143I GATC 6 cut(s) 44, 1147, 1272, 2103, 2293, 3052
BspACI CCGC 3 cut(s) 181, 1011, 1259
BspANI GGCC 4 cut(s) 1667, 1807, 2259, 2644
BspCNI CTCAG 6 cut(s) 1258, 1619, 2450, 2716, 2857, 3187
BspFNI CGCG 1 cut(s) 2972
BspHI TCATGA 3 cut(s) 312, 1867, 3181
BspLI GGNNCC 4 cut(s) 320, 451, 2433, 3054
BspPI GGATC 4 cut(s) 39, 1155, 3047, 3060
BspT104I TTCGAA 1 cut(s) 926
BspT107I GGYRCC 2 cut(s) 449, 2431
BspTNI GGTCTC 2 cut(s) 386, 3177
BsrDI GCAATG 2 cut(s) 1313, 1837
BsrGI TGTACA 2 cut(s) 1470, 1520
BsrI ACTGG 3 cut(s) 993, 1050, 1771
BssECI CCNNGG 4 cut(s) 347, 1668, 2374, 2793
BssMI GATC 6 cut(s) 44, 1147, 1272, 2103, 2293, 3052
BssNAI GTATAC 1 cut(s) 691
BssT1I CCWWGG 2 cut(s) 2374, 2793
Bst1107I GTATAC 1 cut(s) 691
Bst2UI CCWGG 2 cut(s) 1809, 2855
Bst6I CTCTTC 4 cut(s) 29, 108, 721, 851
BstAUI TGTACA 2 cut(s) 1470, 1520
BstBAI YACGTR 1 cut(s) 2474
BstBI TTCGAA 1 cut(s) 926
BstC8I GCNNGC 2 cut(s) 2909, 2927
BstDEI CTNAG 9 cut(s) 6, 1266, 1606, 2316, 2437, 2639, 2724, 2844, 3174
BstDSI CCRYGG 1 cut(s) 1668
BstENI CCTNNNNNAGG 1 cut(s) 2264
BstF5I GGATG 9 cut(s) 150, 198, 1405, 1462, 1717, 2077, 2233, 2605, 2808
BstFNI CGCG 1 cut(s) 2972
BstH2I RGCGCY 1 cut(s) 1433
BstHHI GCGC 2 cut(s) 307, 1432
BstKTI GATC 6 cut(s) 47, 1150, 1275, 2106, 2296, 3055
BstMAI GTCTC 4 cut(s) 386, 853, 2847, 3177
BstMBI GATC 6 cut(s) 44, 1147, 1272, 2103, 2293, 3052
BstMWI GCNNNNNNNGC 2 cut(s) 1645, 1984
BstNI CCWGG 2 cut(s) 1809, 2855
BstNSI RCATGY 4 cut(s) 361, 1617, 2062, 2552
BstSCI CCNGG 2 cut(s) 1807, 2853
BstSFI CTRYAG 3 cut(s) 796, 2118, 3029
BstSNI TACGTA 1 cut(s) 2474
BstUI CGCG 1 cut(s) 2972
BstV1I GCAGC 2 cut(s) 314, 685
BstV2I GAAGAC 2 cut(s) 45, 77
BstX2I RGATCY 4 cut(s) 1147, 1272, 2293, 3052
BstXI CCANNNNNNTGG 1 cut(s) 1021
BstYI RGATCY 4 cut(s) 1147, 1272, 2293, 3052
BstZ17I GTATAC 1 cut(s) 691
BsuI GTATCC 1 cut(s) 2948
BsuRI GGCC 4 cut(s) 1667, 1807, 2259, 2644
BtgI CCRYGG 1 cut(s) 1668
BtsCI GGATG 9 cut(s) 150, 198, 1405, 1462, 1717, 2077, 2233, 2605, 2808
BtsI GCAGTG 2 cut(s) 1899, 2955
BtsIMutI CAGTG 8 cut(s) 597, 1899, 2287, 2655, 2721, 2918, 2955, 3215
Cac8I GCNNGC 2 cut(s) 2909, 2927
CaiI CAGNNNCTG 1 cut(s) 2954
CciI TCATGA 3 cut(s) 312, 1867, 3181
CfoI GCGC 2 cut(s) 307, 1432
Cfr13I GGNCC 2 cut(s) 318, 2521
CseI GACGC 1 cut(s) 2961
Csp6I GTAC 8 cut(s) 450, 1311, 1471, 1521, 1537, 2216, 2432, 2742
CviQI GTAC 8 cut(s) 450, 1311, 1471, 1521, 1537, 2216, 2432, 2742
DdeI CTNAG 9 cut(s) 6, 1266, 1606, 2316, 2437, 2639, 2724, 2844, 3174
DpnI GATC 6 cut(s) 46, 1149, 1274, 2105, 2295, 3054
DpnII GATC 6 cut(s) 44, 1147, 1272, 2103, 2293, 3052
DraI TTTAAA 4 cut(s) 1750, 1776, 1995, 2536
DraIII CACNNNGTG 1 cut(s) 1792
EaeI YGGCCR 1 cut(s) 1665
Eam1104I CTCTTC 4 cut(s) 29, 108, 721, 851
EarI CTCTTC 4 cut(s) 29, 108, 721, 851
Eco105I TACGTA 1 cut(s) 2474
Eco130I CCWWGG 2 cut(s) 2374, 2793
Eco147I AGGCCT 1 cut(s) 2644
Eco24I GRGCYC 2 cut(s) 274, 2710
Eco31I GGTCTC 2 cut(s) 386, 3177
Eco47I GGWCC 2 cut(s) 318, 2521
Eco47III AGCGCT 1 cut(s) 1431
Eco57I CTGAAG 4 cut(s) 2087, 2226, 2822, 3143
EcoNI CCTNNNNNAGG 1 cut(s) 2264
EcoO109I RGGNCCY 1 cut(s) 318
EcoRI GAATTC 1 cut(s) 2651
EcoRII CCWGG 2 cut(s) 1807, 2853
EcoT14I CCWWGG 2 cut(s) 2374, 2793
EcoT22I ATGCAT 2 cut(s) 2233, 2395
EcoT38I GRGCYC 2 cut(s) 274, 2710
ErhI CCWWGG 2 cut(s) 2374, 2793
FalI AAGNNNNNCTT 4 cut(s) 1690, 1722, 2367, 2399
FaqI GGGAC 1 cut(s) 377
FauI CCCGC 1 cut(s) 188
FauNDI CATATG 1 cut(s) 2592
FblI GTMKAC 1 cut(s) 690
Fnu4HI GCNGC 2 cut(s) 303, 674
FokI GGATG 9 cut(s) 137, 185, 1412, 1469, 1724, 2084, 2240, 2612, 2815
FriOI GRGCYC 2 cut(s) 274, 2710
Fsp4HI GCNGC 2 cut(s) 303, 674
FspBI CTAG 5 cut(s) 986, 1172, 2021, 2291, 3246
GlaI GCGC 2 cut(s) 306, 1431
GluI GCNGC 2 cut(s) 303, 674
GsaI CCCAGC 1 cut(s) 42
GsuI CTGGAG 6 cut(s) 684, 1067, 1311, 1407, 1788, 2876
HaeII RGCGCY 1 cut(s) 1433
HaeIII GGCC 4 cut(s) 1667, 1807, 2259, 2644
HgaI GACGC 1 cut(s) 2961
HhaI GCGC 2 cut(s) 307, 1432
Hin6I GCGC 2 cut(s) 305, 1430
HinP1I GCGC 2 cut(s) 305, 1430
HindIII AAGCTT 5 cut(s) 8, 333, 929, 1699, 2905
HphI GGTGA 3 cut(s) 2317, 2705, 2739
Hpy166II GTNNAC 3 cut(s) 691, 1786, 2216
Hpy188I TCNGA 8 cut(s) 348, 826, 852, 1589, 1695, 2440, 2994, 3123
Hpy188III TCNNGA 9 cut(s) 313, 663, 1151, 1290, 1868, 2149, 2225, 2824, 3182
Hpy8I GTNNAC 3 cut(s) 691, 1786, 2216
HpyCH4IV ACGT 2 cut(s) 121, 2473
HpyF10VI GCNNNNNNNGC 2 cut(s) 1645, 1984
HpyF3I CTNAG 9 cut(s) 6, 1266, 1606, 2316, 2437, 2639, 2724, 2844, 3174
HpySE526I ACGT 2 cut(s) 121, 2473
HspAI GCGC 2 cut(s) 305, 1430
KpnI GGTACC 2 cut(s) 453, 2435
Kzo9I GATC 6 cut(s) 44, 1147, 1272, 2103, 2293, 3052
LmnI GCTCC 3 cut(s) 665, 2857, 3232
Lsp1109I GCAGC 2 cut(s) 314, 685
LweI GCATC 7 cut(s) 289, 1447, 2071, 2218, 2380, 2485, 2590
MaeI CTAG 5 cut(s) 986, 1172, 2021, 2291, 3246
MaeII ACGT 2 cut(s) 121, 2473
MaeIII GTNAC 7 cut(s) 77, 1210, 2659, 2950, 3041, 3064, 3079
MalI GATC 6 cut(s) 46, 1149, 1274, 2105, 2295, 3054
MboI GATC 6 cut(s) 44, 1147, 1272, 2103, 2293, 3052
MfeI CAATTG 2 cut(s) 522, 951
MflI RGATCY 4 cut(s) 1147, 1272, 2293, 3052
MhlI GDGCHC 3 cut(s) 274, 712, 2710
MlsI TGGCCA 1 cut(s) 1667
MluNI TGGCCA 1 cut(s) 1667
MlyI GAGTC 5 cut(s) 230, 841, 1398, 1880, 2903
MmeI TCCRAC 1 cut(s) 785
Mox20I TGGCCA 1 cut(s) 1667
Mph1103I ATGCAT 2 cut(s) 2233, 2395
MroXI GAANNNNTTC 1 cut(s) 2835
MscI TGGCCA 1 cut(s) 1667
MslI CAYNNNNRTG 2 cut(s) 291, 1673
Msp20I TGGCCA 1 cut(s) 1667
MspR9I CCNGG 2 cut(s) 1809, 2855
MssI GTTTAAAC 1 cut(s) 2536
MunI CAATTG 2 cut(s) 522, 951
Mva1269I GAATGC 3 cut(s) 655, 779, 1485
MvaI CCWGG 2 cut(s) 1809, 2855
MvnI CGCG 1 cut(s) 2972
MwoI GCNNNNNNNGC 2 cut(s) 1645, 1984
NdeI CATATG 1 cut(s) 2592
NdeII GATC 6 cut(s) 44, 1147, 1272, 2103, 2293, 3052
NlaIV GGNNCC 4 cut(s) 320, 451, 2433, 3054
NmuCI GTSAC 2 cut(s) 2950, 3041
NsiI ATGCAT 2 cut(s) 2233, 2395
NspI RCATGY 4 cut(s) 361, 1617, 2062, 2552
NspV TTCGAA 1 cut(s) 926
OliI CACNNNNGTG 1 cut(s) 1673
PagI TCATGA 3 cut(s) 312, 1867, 3181
PceI AGGCCT 1 cut(s) 2644
PciI ACATGT 2 cut(s) 2058, 2548
PcsI WCGNNNNNNNCGW 1 cut(s) 1919
PctI GAATGC 3 cut(s) 655, 779, 1485
PdmI GAANNNNTTC 1 cut(s) 2835
PfeI GAWTC 8 cut(s) 186, 352, 1026, 2044, 2322, 2408, 2465, 3098
PfoI TCCNGGA 1 cut(s) 2853
PkrI GCNGC 2 cut(s) 304, 675
PleI GAGTC 5 cut(s) 229, 840, 1397, 1879, 2902
PmeI GTTTAAAC 1 cut(s) 2536
PpsI GAGTC 5 cut(s) 229, 840, 1397, 1879, 2902
Ppu21I YACGTR 1 cut(s) 2474
PpuMI RGGWCCY 1 cut(s) 318
PscI ACATGT 2 cut(s) 2058, 2548
PshBI ATTAAT 4 cut(s) 1197, 1230, 1959, 2424
PsiI TTATAA 3 cut(s) 1620, 2346, 2357
Psp5II RGGWCCY 1 cut(s) 318
Psp6I CCWGG 2 cut(s) 1807, 2853
PspFI CCCAGC 1 cut(s) 38
PspGI CCWGG 2 cut(s) 1807, 2853
PspN4I GGNNCC 4 cut(s) 320, 451, 2433, 3054
PspPI GGNCC 2 cut(s) 318, 2521
PspPPI RGGWCCY 1 cut(s) 318
PstNI CAGNNNCTG 1 cut(s) 2954
PsuI RGATCY 4 cut(s) 1147, 1272, 2293, 3052
RsaI GTAC 8 cut(s) 451, 1312, 1472, 1522, 1538, 2217, 2433, 2743
RsaNI GTAC 8 cut(s) 450, 1311, 1471, 1521, 1537, 2216, 2432, 2742
RseI CAYNNNNRTG 2 cut(s) 291, 1673
SatI GCNGC 2 cut(s) 303, 674
Sau3AI GATC 6 cut(s) 44, 1147, 1272, 2103, 2293, 3052
Sau96I GGNCC 2 cut(s) 318, 2521
SchI GAGTC 5 cut(s) 230, 841, 1398, 1880, 2903
ScrFI CCNGG 2 cut(s) 1809, 2855
SduI GDGCHC 3 cut(s) 274, 712, 2710
SfaNI GCATC 7 cut(s) 289, 1447, 2071, 2218, 2380, 2485, 2590
SfcI CTRYAG 3 cut(s) 796, 2118, 3029
SfuI TTCGAA 1 cut(s) 926
SinI GGWCC 2 cut(s) 318, 2521
SmiMI CAYNNNNRTG 2 cut(s) 291, 1673
SmlI CTYRAG 4 cut(s) 436, 1568, 2525, 2824
SmoI CTYRAG 4 cut(s) 436, 1568, 2525, 2824
SnaBI TACGTA 1 cut(s) 2474
SpeI ACTAGT 1 cut(s) 2020
SseBI AGGCCT 1 cut(s) 2644
SsiI CCGC 3 cut(s) 181, 1011, 1259
SspI AATATT 1 cut(s) 2335
SspMI CTAG 5 cut(s) 986, 1172, 2021, 2291, 3246
StuI AGGCCT 1 cut(s) 2644
StyD4I CCNGG 2 cut(s) 1807, 2853
StyI CCWWGG 2 cut(s) 2374, 2793
TaiI ACGT 2 cut(s) 124, 2476
TaqI TCGA 5 cut(s) 224, 783, 926, 1077, 3224
TatI WGTACW 3 cut(s) 1310, 1470, 1520
TfiI GAWTC 8 cut(s) 186, 352, 1026, 2044, 2322, 2408, 2465, 3098
TscAI CASTG 8 cut(s) 597, 1899, 2287, 2662, 2728, 2925, 2955, 3222
TseFI GTSAC 2 cut(s) 2950, 3041
TseI GCWGC 2 cut(s) 302, 673
Tsp45I GTSAC 2 cut(s) 2950, 3041
TspGWI ACGGA 1 cut(s) 1685
TspRI CASTG 8 cut(s) 597, 1899, 2287, 2662, 2728, 2925, 2955, 3222
VpaK11BI GGWCC 2 cut(s) 318, 2521
VspI ATTAAT 4 cut(s) 1197, 1230, 1959, 2424
XagI CCTNNNNNAGG 1 cut(s) 2264
XapI RAATTY 9 cut(s) 340, 1103, 1244, 1504, 1777, 1798, 2651, 2713, 2770
XceI RCATGY 4 cut(s) 361, 1617, 2062, 2552
XcmI CCANNNNNNNNNTGG 2 cut(s) 1372, 2800
XmiI GTMKAC 1 cut(s) 690
XmnI GAANNNNTTC 1 cut(s) 2835
XspI CTAG 5 cut(s) 986, 1172, 2021, 2291, 3246
Zsp2I ATGCAT 2 cut(s) 2233, 2395
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.