MD00G1075600.v1.1

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr00
OG0001567
Physical Location & Seq
Forward (+)
15305993 .. 15307187
1195 bp
Loading structure...
UTR
Exon/CDS
Intron
MD00G1075600.v1.1.491

Sequence Viewer

Length: 738 bp
ATGGTAAAGGACTTCCTGATGGGTTTGAAGAGAGATGGATGCTCAACGTGCATGCAATTGATACAAGAGGAGTGGAAGATAACTTGGGTTGCACGGAGTGCAGGTGTGATTTGTATAACGTGTCTAGGGATCCAAGTGGCCAACCTCTGCCGGCTGGGTACACCGGGGGTTTTGTTGTGTTGCACTGATGGTGCAAAGTGCAGACTGAAACGAGGGTTTGATGGTGAAAAGAAAAACCACTACTTGAGATATACTGTGAAGTGGGTTGACTGGTCTGAGTTTCTTCTGCCTGCCAAGATTTATATCTTTGATGCCACTGATATCATGAATTCTTCGGCACCTGCTGCAGCTAAACACAATTGCCAGGTCGAATATGATGTTGCAAAGTCTTGCAATGCAACTGGTGTTTGCTTAGACAACAAATGGGCAAAGATTTCAATTCCAACTGGTGGTTATGTCATCTATGGTGTAGCTCATCAGCACAAAGGGGGGCTTGGTTCAACACTCTATGGACAGGACGGAAGGGTTTTGTGTTCGTCCACACCAATTTATGGAAATGGAACGAAAGCAGGAAATGAGGCCGGTTATATTGTAGGAATGACGACTTGTTACCCTTGGCCAGGCTCAGTCAAGATAAAAAATGCGGAGCCTCTGACTCTAGTTTCTACTTACAACAGCACTCAGATGCACAGCGGAGTCATGGGTCTCTTCTACATTTTGGTTGCAGAAACACTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SURNod19

Protein Analysis

246

Amino Acids

26.7

Weight (kDa)

8.63

Isoelectric Point (pI)

26.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SURNod19 PF07712 56 - 243 5.4e-83 Stress up-regulated Nod 19
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 92, 349
Acc36I ACCTGC 2 cut(s) 92, 349
AccB1I GGYRCC 1 cut(s) 337
AccB7I CCANNNNNTGG 2 cut(s) 449, 551
AciI CCGC 2 cut(s) 644, 693
AclWI GGATC 2 cut(s) 124, 137
AcoI YGGCCR 2 cut(s) 138, 617
AcsI RAATTY 1 cut(s) 328
AdeI CACNNNGTG 1 cut(s) 98
AfaI GTAC 1 cut(s) 160
AfiI CCNNNNNNNGG 3 cut(s) 449, 551, 620
AflIII ACRYGT 1 cut(s) 119
AgsI TTSAA 3 cut(s) 28, 438, 501
AjnI CCWGG 2 cut(s) 363, 619
AluBI AGCT 2 cut(s) 350, 473
AluI AGCT 2 cut(s) 350, 473
Alw26I GTCTC 1 cut(s) 710
AlwI GGATC 2 cut(s) 124, 137
AoxI GGCC 3 cut(s) 138, 579, 617
ApeKI GCWGC 2 cut(s) 344, 347
ApoI RAATTY 1 cut(s) 328
AsuC2I CCSGG 1 cut(s) 165
AsuHPI GGTGA 1 cut(s) 236
BalI TGGCCA 2 cut(s) 140, 619
BamHI GGATCC 1 cut(s) 129
BanI GGYRCC 1 cut(s) 337
BbvI GCAGC 2 cut(s) 331, 359
BccI CCATC 4 cut(s) 13, 29, 182, 215
BciT130I CCWGG 2 cut(s) 365, 621
BcnI CCSGG 1 cut(s) 165
BcoDI GTCTC 1 cut(s) 710
BfaI CTAG 2 cut(s) 125, 659
BfmI CTRYAG 1 cut(s) 345
BfuAI ACCTGC 2 cut(s) 92, 349
BisI GCNGC 2 cut(s) 345, 348
BlsI GCNGC 2 cut(s) 346, 349
Bme1390I CCNGG 3 cut(s) 165, 365, 621
BmiI GGNNCC 3 cut(s) 131, 339, 648
BmrFI CCNGG 3 cut(s) 165, 365, 621
BmsI GCATC 3 cut(s) 29, 301, 675
BpuEI CTTGAG 1 cut(s) 265
BpuMI CCSGG 1 cut(s) 165
BsaBI GATNNNNATC 1 cut(s) 302
BsaI GGTCTC 1 cut(s) 710
BsaJI CCNNGG 2 cut(s) 164, 614
BsaXI ACNNNNNCTCC 2 cut(s) 88, 118
Bsc4I CCNNNNNNNGG 3 cut(s) 449, 551, 620
Bse118I RCCGGY 2 cut(s) 150, 581
Bse1I ACTGG 3 cut(s) 275, 406, 451
Bse3DI GCAATG 1 cut(s) 400
Bse8I GATNNNNATC 1 cut(s) 302
BseBI CCWGG 2 cut(s) 365, 621
BseDI CCNNGG 2 cut(s) 164, 614
BseGI GGATG 1 cut(s) 44
BseJI GATNNNNATC 1 cut(s) 302
BseLI CCNNNNNNNGG 3 cut(s) 449, 551, 620
BseMI GCAATG 1 cut(s) 400
BseMII CTCAG 3 cut(s) 267, 639, 695
BseNI ACTGG 3 cut(s) 275, 406, 451
BseRI GAGGAG 1 cut(s) 83
BseXI GCAGC 2 cut(s) 331, 359
BseYI CCCAGC 1 cut(s) 154
BsgI GTGCAG 2 cut(s) 120, 220
BshFI GGCC 3 cut(s) 140, 581, 619
BshNI GGYRCC 1 cut(s) 337
BsiSI CCGG 3 cut(s) 151, 164, 582
BslI CCNNNNNNNGG 3 cut(s) 449, 551, 620
BsmAI GTCTC 1 cut(s) 710
BsnI GGCC 3 cut(s) 140, 581, 619
Bso31I GGTCTC 1 cut(s) 710
Bsp143I GATC 1 cut(s) 129
BspACI CCGC 2 cut(s) 644, 693
BspANI GGCC 3 cut(s) 140, 581, 619
BspCNI CTCAG 3 cut(s) 268, 638, 694
BspHI TCATGA 1 cut(s) 324
BspLI GGNNCC 3 cut(s) 131, 339, 648
BspMAI CTGCAG 1 cut(s) 349
BspMI ACCTGC 2 cut(s) 92, 349
BspPI GGATC 2 cut(s) 124, 137
BspT107I GGYRCC 1 cut(s) 337
BspTNI GGTCTC 1 cut(s) 710
BsrDI GCAATG 1 cut(s) 400
BsrFI RCCGGY 2 cut(s) 150, 581
BsrI ACTGG 3 cut(s) 275, 406, 451
BssAI RCCGGY 2 cut(s) 150, 581
BssECI CCNNGG 2 cut(s) 164, 614
BssMI GATC 1 cut(s) 129
BssT1I CCWWGG 1 cut(s) 614
Bst2UI CCWGG 2 cut(s) 365, 621
Bst4CI ACNGT 1 cut(s) 256
Bst6I CTCTTC 2 cut(s) 23, 713
BstAPI GCANNNNNTGC 2 cut(s) 98, 344
BstC8I GCNNGC 3 cut(s) 53, 152, 291
BstDEI CTNAG 4 cut(s) 276, 412, 625, 681
BstENI CCTNNNNNAGG 1 cut(s) 618
BstF5I GGATG 1 cut(s) 44
BstKTI GATC 1 cut(s) 132
BstMAI GTCTC 1 cut(s) 710
BstMBI GATC 1 cut(s) 129
BstMWI GCNNNNNNNGC 3 cut(s) 48, 98, 344
BstNI CCWGG 2 cut(s) 365, 621
BstNSI RCATGY 1 cut(s) 55
BstSCI CCNGG 3 cut(s) 163, 363, 619
BstSFI CTRYAG 1 cut(s) 345
BstV1I GCAGC 2 cut(s) 331, 359
BstX2I RGATCY 1 cut(s) 129
BstYI RGATCY 1 cut(s) 129
BsuRI GGCC 3 cut(s) 140, 581, 619
BtsCI GGATG 1 cut(s) 44
BtsIMutI CAGTG 2 cut(s) 183, 315
BveI ACCTGC 2 cut(s) 92, 349
Cac8I GCNNGC 3 cut(s) 53, 152, 291
CciI TCATGA 1 cut(s) 324
Cfr10I RCCGGY 2 cut(s) 150, 581
Csp6I GTAC 1 cut(s) 159
CspCI CAANNNNNGTGG 2 cut(s) 53, 88
CviAII CATG 3 cut(s) 52, 325, 700
CviJI RGCY 9 cut(s) 140, 154, 350, 473, 493, 581, 619, 624, 649
CviKI_1 RGCY 9 cut(s) 140, 154, 350, 473, 493, 581, 619, 624, 649
CviQI GTAC 1 cut(s) 159
DdeI CTNAG 4 cut(s) 276, 412, 625, 681
DpnI GATC 1 cut(s) 131
DpnII GATC 1 cut(s) 129
DraIII CACNNNGTG 1 cut(s) 98
EaeI YGGCCR 2 cut(s) 138, 617
Eam1104I CTCTTC 2 cut(s) 23, 713
EarI CTCTTC 2 cut(s) 23, 713
Eco130I CCWWGG 1 cut(s) 614
Eco31I GGTCTC 1 cut(s) 710
Eco32I GATATC 1 cut(s) 322
EcoNI CCTNNNNNAGG 1 cut(s) 618
EcoRI GAATTC 1 cut(s) 328
EcoRII CCWGG 2 cut(s) 363, 619
EcoRV GATATC 1 cut(s) 322
EcoT14I CCWWGG 1 cut(s) 614
ErhI CCWWGG 1 cut(s) 614
FaeI CATG 3 cut(s) 55, 328, 703
FalI AAGNNNNNCTT 2 cut(s) 477, 509
FatI CATG 3 cut(s) 51, 324, 699
Fnu4HI GCNGC 2 cut(s) 345, 348
FokI GGATG 1 cut(s) 51
Fsp4HI GCNGC 2 cut(s) 345, 348
FspBI CTAG 2 cut(s) 125, 659
GluI GCNGC 2 cut(s) 345, 348
GsaI CCCAGC 1 cut(s) 158
HaeIII GGCC 3 cut(s) 140, 581, 619
HapII CCGG 3 cut(s) 151, 164, 582
Hin1II CATG 3 cut(s) 55, 328, 703
HincII GTYRAC 1 cut(s) 268
HindII GTYRAC 1 cut(s) 268
HinfI GANTC 2 cut(s) 655, 696
HpaII CCGG 3 cut(s) 151, 164, 582
HphI GGTGA 1 cut(s) 236
Hpy166II GTNNAC 3 cut(s) 161, 268, 540
Hpy188I TCNGA 3 cut(s) 277, 654, 684
Hpy188III TCNNGA 3 cut(s) 16, 325, 631
Hpy8I GTNNAC 3 cut(s) 161, 268, 540
HpyAV CCTTC 1 cut(s) 516
HpyCH4III ACNGT 1 cut(s) 256
HpyCH4IV ACGT 2 cut(s) 47, 119
HpyF10VI GCNNNNNNNGC 3 cut(s) 48, 98, 344
HpyF3I CTNAG 4 cut(s) 276, 412, 625, 681
HpySE526I ACGT 2 cut(s) 47, 119
Hsp92II CATG 3 cut(s) 55, 328, 703
KroI GCCGGC 1 cut(s) 150
KroNI GCCGGC 1 cut(s) 152
Kzo9I GATC 1 cut(s) 129
LmnI GCTCC 1 cut(s) 646
Lsp1109I GCAGC 2 cut(s) 331, 359
LweI GCATC 3 cut(s) 29, 301, 675
MaeI CTAG 2 cut(s) 125, 659
MaeII ACGT 2 cut(s) 47, 119
MaeIII GTNAC 1 cut(s) 608
MalI GATC 1 cut(s) 131
MboI GATC 1 cut(s) 129
MboII GAAGA 5 cut(s) 40, 88, 275, 324, 700
MfeI CAATTG 2 cut(s) 56, 358
MflI RGATCY 1 cut(s) 129
MlsI TGGCCA 2 cut(s) 140, 619
MluCI AATT 5 cut(s) 56, 328, 358, 438, 546
MluNI TGGCCA 2 cut(s) 140, 619
MlyI GAGTC 2 cut(s) 649, 705
MmeI TCCRAC 1 cut(s) 467
MnlI CCTC 5 cut(s) 61, 155, 206, 571, 660
Mox20I TGGCCA 2 cut(s) 140, 619
MroNI GCCGGC 1 cut(s) 150
MscI TGGCCA 2 cut(s) 140, 619
MslI CAYNNNNRTG 1 cut(s) 683
Msp20I TGGCCA 2 cut(s) 140, 619
MspA1I CMGCKG 1 cut(s) 693
MspI CCGG 3 cut(s) 151, 164, 582
MspR9I CCNGG 3 cut(s) 165, 365, 621
MunI CAATTG 2 cut(s) 56, 358
MvaI CCWGG 2 cut(s) 365, 621
MwoI GCNNNNNNNGC 3 cut(s) 48, 98, 344
NaeI GCCGGC 1 cut(s) 152
NciI CCSGG 1 cut(s) 165
NdeII GATC 1 cut(s) 129
NgoMIV GCCGGC 1 cut(s) 150
NlaIII CATG 3 cut(s) 55, 328, 703
NlaIV GGNNCC 3 cut(s) 131, 339, 648
NspI RCATGY 1 cut(s) 55
PaeI GCATGC 1 cut(s) 55
PagI TCATGA 1 cut(s) 324
PaqCI CACCTGC 2 cut(s) 92, 349
PdiI GCCGGC 1 cut(s) 152
PflMI CCANNNNNTGG 2 cut(s) 449, 551
PkrI GCNGC 2 cut(s) 346, 349
PleI GAGTC 2 cut(s) 649, 704
PpsI GAGTC 2 cut(s) 649, 704
Psp6I CCWGG 2 cut(s) 363, 619
PspFI CCCAGC 1 cut(s) 154
PspGI CCWGG 2 cut(s) 363, 619
PspN4I GGNNCC 3 cut(s) 131, 339, 648
PstI CTGCAG 1 cut(s) 349
PsuI RGATCY 1 cut(s) 129
RsaI GTAC 1 cut(s) 160
RsaNI GTAC 1 cut(s) 159
RseI CAYNNNNRTG 1 cut(s) 683
SatI GCNGC 2 cut(s) 345, 348
Sau3AI GATC 1 cut(s) 129
SchI GAGTC 2 cut(s) 649, 705
ScrFI CCNGG 3 cut(s) 165, 365, 621
SetI ASST 8 cut(s) 50, 106, 122, 147, 343, 352, 369, 475
SfaNI GCATC 3 cut(s) 29, 301, 675
SfcI CTRYAG 1 cut(s) 345
SmiMI CAYNNNNRTG 1 cut(s) 683
SmlI CTYRAG 1 cut(s) 244
SmoI CTYRAG 1 cut(s) 244
SphI GCATGC 1 cut(s) 55
Sse9I AATT 5 cut(s) 56, 328, 358, 438, 546
SsiI CCGC 2 cut(s) 644, 693
SspMI CTAG 2 cut(s) 125, 659
StyD4I CCNGG 3 cut(s) 163, 363, 619
StyI CCWWGG 1 cut(s) 614
TaaI ACNGT 1 cut(s) 256
TaiI ACGT 2 cut(s) 50, 122
TaqI TCGA 1 cut(s) 369
TasI AATT 5 cut(s) 56, 328, 358, 438, 546
TscAI CASTG 2 cut(s) 190, 322
TseI GCWGC 2 cut(s) 344, 347
TspDTI ATGAA 1 cut(s) 341
TspGWI ACGGA 2 cut(s) 109, 534
TspRI CASTG 2 cut(s) 190, 322
Van91I CCANNNNNTGG 2 cut(s) 449, 551
XagI CCTNNNNNAGG 1 cut(s) 618
XapI RAATTY 1 cut(s) 328
XceI RCATGY 1 cut(s) 55
XspI CTAG 2 cut(s) 125, 659
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.