Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0001567

Physical Location & Seq

Genomic Coordinates Forward (+)

15323579 .. 15326423

Gene Structure 2845 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1075700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1194 bp

ATGGTAGTATTGACATTAAGCACACCATGCTCACATGCTCTTAGGATTGTCAAAACTAAGACAAGAACTAGTGTTTTTGTCTCCCCTAAGTTTGTGTTGGGACCTGGATCGGTTGCAGACAAGTATTACTACGATATCGACTTCCCGAAAGGTCATATTGCAATCAAGAGCTTCACTGCTGAAGTAATTGACGAGGAAGGGAATCCGAATCCCCTTCACGAAACTTATCTCCATCATTGGGTTGTCGAGGGGTATTATGGCCGCGTAGGTTCTGTGGAGCCGGAGGGGACTCGTGTTGAGGAGCTTCAAAGGTCGGATTTTATTCTTGTGAGAAACAGTGGAGTGTGCCAGAGGACTCTCGGACAGTACTTTGGACTTGGGTCCGAAACACGGAAGACAGATACACATGTTCCGGATCCTTTTGGAATTGAAGTTGGGAATCCAGCAGTGATTCCTGCTGGCTATGAGGAGAGATGGATGCTCAATGTGCACGCCATTGACACACGGGGAGCGGAGAATGGGTTGGGATGCATCGAGTGCAGGTGTGATCTTTATAATGTGTCAACGGATTCTAGGGGCCAGCCTTTGAGGCCAGGGTACGTAGGAGGTTTGTTTTGTTGTTATGATGGTGTTCAGTGCAGAGTAAAACAAGGCTTTAATGGTGTCAAGAGAAACCTCTACTTAAGATATACTGTGAAGTGGGTTGATTGGTCTGATTCGATCGTGCCTGTCAAGATTTTTATCTTTGATGTCACTGATCAAATGAATCATTCAACCGGACATGCTATTGAACATGAGTGCCGGGTTGAATATAATGTCGAAGAGTCTTGCAGTGCAACCAGTGATGGGTGCTTTGACAGCCAATCGTCATTGGCTACTATGACGACTGGTGGTTATGTCGTCTATGGTGTAGCTCATCAGCACACGGGGGGGATTGGTTCAACTCTATATGGAGAGGACGGACGGGTTCTGTGTTCGTCAATACCTATTTATGGAAAAGGGAAGGAAGCTGGAGATGAGGCTGGTTATATTGTAGGAATGTCCAGTTGTTATCCTCGACCGGGCTCAATCAGAATAAACGATGGCGAGACTCTGACTCTAGTTTCTAATTACAGCAGCACTCAGACGCACACCGGAGTTATGGGTCTCTTCTACATTTTGGTTGCTGACTACCTTCCAAATTCCTCTGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SURNod19

Protein Analysis

398

Amino Acids

43.61

Weight (kDa)

5.54

Isoelectric Point (pI)

36.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SURNod19	PF07712	20 - 390	4.9e-184	Stress up-regulated Nod 19

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001567)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61820 AT5G61820
fragaria_vesca	FvH4_5g09784 FvH4_5g09790
malus_domestica	MD00G1075600.v1.1 MD00G1075700.v1.1 MD00G1129500.v1.1 MD14G1145500.v1.1 MD14G1145600.v1.1
prunus_persica	Prupe.5G139900_v2.0.a1
pyrus_communis	pycom06g11990 pycom14g12060
rosa_chinensis	RchiOBHm_Chr4g0410211 RchiOBHm_Chr7g0188461 RchiOBHm_Chr7g0188471
rosa_laevigata	RLG00000004693 RLG00000004694 RLG00000008444 RLG00000030736
rosa_multiflora	Rmu_co8347943.1_g000001 Rmu_co8368305.1_g000001 Rmu_co8492735.1_g000001 Rmu_sc0000365.1_g000007 Rmu_sc0004806.1_g000001 Rmu_sc0006329.1_g000004 Rmu_sc0016427.1_g000001 Rmu_sc0034815.1_g000001
rosa_roxburghii	Rroxscaffold_3G00266400 Rroxscaffold_3G00266410 Rroxscaffold_5G00354720 Rroxscaffold_5G00354790
rosa_rugosa	Rorug01G0024000 Rorug04G0101400 Rorug06G0490400 Rorug06G0490500
rosa_samantha	Rh4AG159600 Rh4BG158600 Rh4CG171500 Rh4DG154500 Rh7AG095300 Rh7BG096800 Rh7BG096900 Rh7CG097600 Rh7CG097700 Rh7DG096900 Rh7DG097000
rosa_wichuraiana	Rw1G002850 Rw4G013290 Rw7G008220 Rw7G008230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	555
AarI	CACCTGC	1 cut(s)	531
Acc36I	ACCTGC	1 cut(s)	531
AccBSI	CCGCTC	1 cut(s)	512
AccII	CGCG	1 cut(s)	264
AccIII	TCCGGA	1 cut(s)	412
AciI	CCGC	2 cut(s)	262, 512
AclWI	GGATC	3 cut(s)	115, 410, 423
AcoI	YGGCCR	1 cut(s)	259
AcsI	RAATTY	1 cut(s)	1180
AcuI	CTGAAG	1 cut(s)	201
AfaI	GTAC	2 cut(s)	368, 599
AfiI	CCNNNNNNNGG	5 cut(s)	238, 390, 846, 992, 1061
AflII	CTTAAG	1 cut(s)	682
AflIII	ACRYGT	1 cut(s)	406
AgsI	TTSAA	6 cut(s)	308, 431, 774, 791, 809, 942
AhlI	ACTAGT	1 cut(s)	68
AjnI	CCWGG	2 cut(s)	103, 592
AluBI	AGCT	4 cut(s)	171, 304, 914, 1010
AluI	AGCT	4 cut(s)	171, 304, 914, 1010
Alw21I	GWGCWC	1 cut(s)	492
Alw26I	GTCTC	3 cut(s)	85, 1082, 1151
Alw44I	GTGCAC	1 cut(s)	488
AlwI	GGATC	3 cut(s)	115, 410, 423
Aor13HI	TCCGGA	1 cut(s)	412
AoxI	GGCC	3 cut(s)	259, 577, 590
ApaLI	GTGCAC	1 cut(s)	488
ApeKI	GCWGC	1 cut(s)	1116
ApoI	RAATTY	1 cut(s)	1180
AspS9I	GGNCC	3 cut(s)	101, 381, 577
AsuC2I	CCSGG	2 cut(s)	803, 1062
AvaII	GGWCC	2 cut(s)	101, 381
BaeGI	GKGCMC	1 cut(s)	492
BaeI	ACNNNNGTAYC	2 cut(s)	393, 426
BamHI	GGATCC	1 cut(s)	415
BanII	GRGCYC	1 cut(s)	1067
BauI	CACGAG	1 cut(s)	291
BbsI	GAAGAC	1 cut(s)	401
Bbv12I	GWGCWC	1 cut(s)	492
BbvI	GCAGC	1 cut(s)	1128
BccI	CCATC	5 cut(s)	240, 468, 620, 839, 1076
BciT130I	CCWGG	2 cut(s)	105, 594
BclI	TGATCA	1 cut(s)	757
BcnI	CCSGG	2 cut(s)	803, 1062
BcoDI	GTCTC	3 cut(s)	85, 1082, 1151
BcuI	ACTAGT	1 cut(s)	68
BfaI	CTAG	3 cut(s)	69, 573, 1100
BfrI	CTTAAG	1 cut(s)	682
BfuAI	ACCTGC	1 cut(s)	531
BglI	GCCNNNNNGGC	1 cut(s)	589
BisI	GCNGC	2 cut(s)	262, 1117
BlsI	GCNGC	2 cut(s)	263, 1118
BmcAI	AGTACT	1 cut(s)	368
Bme1390I	CCNGG	4 cut(s)	105, 594, 803, 1062
Bme18I	GGWCC	2 cut(s)	101, 381
BmgT120I	GGNCC	3 cut(s)	101, 381, 577
BmiI	GGNNCC	5 cut(s)	102, 279, 382, 417, 578
BmrFI	CCNGG	4 cut(s)	105, 594, 803, 1062
BmsI	GCATC	3 cut(s)	468, 518, 540
BoxI	GACNNNNGTC	1 cut(s)	379
BpiI	GAAGAC	1 cut(s)	401
BpmI	CTGGAG	1 cut(s)	1032
BpuMI	CCSGG	2 cut(s)	803, 1062
BsaAI	YACGTR	1 cut(s)	601
BsaBI	GATNNNNATC	1 cut(s)	740
BsaI	GGTCTC	1 cut(s)	1151
BsaJI	CCNNGG	1 cut(s)	593
BsaWI	WCCGGW	3 cut(s)	412, 776, 1133
BsaXI	ACNNNNNCTCC	2 cut(s)	506, 536
Bsc4I	CCNNNNNNNGG	5 cut(s)	238, 390, 846, 992, 1061
Bse1I	ACTGG	3 cut(s)	840, 892, 1044
Bse8I	GATNNNNATC	1 cut(s)	740
BseAI	TCCGGA	1 cut(s)	412
BseBI	CCWGG	2 cut(s)	105, 594
BseDI	CCNNGG	1 cut(s)	593
BseGI	GGATG	2 cut(s)	483, 533
BseJI	GATNNNNATC	1 cut(s)	740
BseLI	CCNNNNNNNGG	5 cut(s)	238, 390, 846, 992, 1061
BseMII	CTCAG	1 cut(s)	1136
BseNI	ACTGG	3 cut(s)	840, 892, 1044
BseRI	GAGGAG	2 cut(s)	314, 482
BseSI	GKGCMC	1 cut(s)	492
BseXI	GCAGC	1 cut(s)	1128
BsgI	GTGCAG	2 cut(s)	559, 658
Bsh1236I	CGCG	1 cut(s)	264
Bsh1285I	CGRYCG	2 cut(s)	723, 1061
BshFI	GGCC	3 cut(s)	261, 579, 592
BsiEI	CGRYCG	2 cut(s)	723, 1061
BsiHKAI	GWGCWC	1 cut(s)	492
BsiSI	CCGG	6 cut(s)	281, 413, 777, 802, 1061, 1134
BslFI	GGGAC	2 cut(s)	114, 301
BslI	CCNNNNNNNGG	5 cut(s)	238, 390, 846, 992, 1061
BsmAI	GTCTC	3 cut(s)	85, 1082, 1151
BsmFI	GGGAC	2 cut(s)	114, 301
BsnI	GGCC	3 cut(s)	261, 579, 592
Bso31I	GGTCTC	1 cut(s)	1151
Bsp1286I	GDGCHC	2 cut(s)	492, 1067
Bsp13I	TCCGGA	1 cut(s)	412
Bsp143I	GATC	5 cut(s)	107, 415, 547, 720, 757
BspACI	CCGC	2 cut(s)	262, 512
BspANI	GGCC	3 cut(s)	261, 579, 592
BspCNI	CTCAG	1 cut(s)	1135
BspEI	TCCGGA	1 cut(s)	412
BspFNI	CGCG	1 cut(s)	264
BspLI	GGNNCC	5 cut(s)	102, 279, 382, 417, 578
BspMI	ACCTGC	1 cut(s)	531
BspPI	GGATC	3 cut(s)	115, 410, 423
BspTI	CTTAAG	1 cut(s)	682
BspTNI	GGTCTC	1 cut(s)	1151
BsrBI	CCGCTC	1 cut(s)	512
BsrI	ACTGG	3 cut(s)	840, 892, 1044
BssECI	CCNNGG	1 cut(s)	593
BssMI	GATC	5 cut(s)	107, 415, 547, 720, 757
BssSI	CACGAG	1 cut(s)	291
Bst2BI	CACGAG	1 cut(s)	291
Bst2UI	CCWGG	2 cut(s)	105, 594
Bst4CI	ACNGT	3 cut(s)	338, 366, 694
Bst6I	CTCTTC	2 cut(s)	816, 1154
BstAFI	CTTAAG	1 cut(s)	682
BstAPI	GCANNNNNTGC	2 cut(s)	27, 537
BstBAI	YACGTR	1 cut(s)	601
BstC8I	GCNNGC	3 cut(s)	460, 492, 581
BstDEI	CTNAG	5 cut(s)	41, 57, 87, 1122, 1191
BstF5I	GGATG	2 cut(s)	483, 533
BstFNI	CGCG	1 cut(s)	264
BstKTI	GATC	5 cut(s)	110, 418, 550, 723, 760
BstMAI	GTCTC	3 cut(s)	85, 1082, 1151
BstMBI	GATC	5 cut(s)	107, 415, 547, 720, 757
BstMCI	CGRYCG	2 cut(s)	723, 1061
BstMWI	GCNNNNNNNGC	5 cut(s)	27, 487, 537, 589, 858
BstNI	CCWGG	2 cut(s)	105, 594
BstNSI	RCATGY	3 cut(s)	38, 410, 785
BstPAI	GACNNNNGTC	1 cut(s)	379
BstSCI	CCNGG	4 cut(s)	103, 592, 801, 1060
BstSLI	GKGCMC	1 cut(s)	492
BstSNI	TACGTA	1 cut(s)	601
BstUI	CGCG	1 cut(s)	264
BstV1I	GCAGC	1 cut(s)	1128
BstV2I	GAAGAC	1 cut(s)	401
BstX2I	RGATCY	1 cut(s)	415
BstYI	RGATCY	1 cut(s)	415
BsuRI	GGCC	3 cut(s)	261, 579, 592
BtsCI	GGATG	2 cut(s)	483, 533
BtsI	GCAGTG	3 cut(s)	174, 453, 838
BtsIMutI	CAGTG	7 cut(s)	174, 343, 453, 641, 753, 838, 847
BveI	ACCTGC	1 cut(s)	531
Cac8I	GCNNGC	3 cut(s)	460, 492, 581
Cfr13I	GGNCC	3 cut(s)	101, 381, 577
CseI	GACGC	1 cut(s)	1135
Csp6I	GTAC	2 cut(s)	367, 598
CviAII	CATG	5 cut(s)	27, 35, 407, 782, 794
CviQI	GTAC	2 cut(s)	367, 598
DdeI	CTNAG	5 cut(s)	41, 57, 87, 1122, 1191
DpnI	GATC	5 cut(s)	109, 417, 549, 722, 759
DpnII	GATC	5 cut(s)	107, 415, 547, 720, 757
EaeI	YGGCCR	1 cut(s)	259
Eam1104I	CTCTTC	2 cut(s)	816, 1154
EarI	CTCTTC	2 cut(s)	816, 1154
Eco105I	TACGTA	1 cut(s)	601
Eco24I	GRGCYC	1 cut(s)	1067
Eco31I	GGTCTC	1 cut(s)	1151
Eco32I	GATATC	1 cut(s)	136
Eco47I	GGWCC	2 cut(s)	101, 381
Eco57I	CTGAAG	1 cut(s)	201
EcoO109I	RGGNCCY	1 cut(s)	101
EcoRII	CCWGG	2 cut(s)	103, 592
EcoRV	GATATC	1 cut(s)	136
EcoT22I	ATGCAT	1 cut(s)	533
EcoT38I	GRGCYC	1 cut(s)	1067
FaeI	CATG	5 cut(s)	30, 38, 410, 785, 797
FaqI	GGGAC	2 cut(s)	114, 301
FatI	CATG	5 cut(s)	26, 34, 406, 781, 793
FbaI	TGATCA	1 cut(s)	757
Fnu4HI	GCNGC	2 cut(s)	262, 1117
FokI	GGATG	2 cut(s)	490, 540
FriOI	GRGCYC	1 cut(s)	1067
Fsp4HI	GCNGC	2 cut(s)	262, 1117
FspBI	CTAG	3 cut(s)	69, 573, 1100
GluI	GCNGC	2 cut(s)	262, 1117
GsuI	CTGGAG	1 cut(s)	1032
HaeIII	GGCC	3 cut(s)	261, 579, 592
HapII	CCGG	6 cut(s)	281, 413, 777, 802, 1061, 1134
HgaI	GACGC	1 cut(s)	1135
Hin1II	CATG	5 cut(s)	30, 38, 410, 785, 797
HincII	GTYRAC	1 cut(s)	564
HindII	GTYRAC	1 cut(s)	564
HpaII	CCGG	6 cut(s)	281, 413, 777, 802, 1061, 1134
Hpy166II	GTNNAC	2 cut(s)	490, 564
Hpy188I	TCNGA	8 cut(s)	207, 316, 362, 385, 715, 1073, 1095, 1125
Hpy188III	TCNNGA	6 cut(s)	145, 166, 218, 413, 667, 733
Hpy8I	GTNNAC	2 cut(s)	490, 564
HpyAV	CCTTC	4 cut(s)	191, 224, 997, 1184
HpyCH4III	ACNGT	3 cut(s)	338, 366, 694
HpyCH4IV	ACGT	1 cut(s)	600
HpyCH4V	TGCA	8 cut(s)	116, 161, 490, 531, 540, 639, 831, 836
HpyF10VI	GCNNNNNNNGC	5 cut(s)	27, 487, 537, 589, 858
HpyF3I	CTNAG	5 cut(s)	41, 57, 87, 1122, 1191
HpySE526I	ACGT	1 cut(s)	600
Hsp92II	CATG	5 cut(s)	30, 38, 410, 785, 797
Kpn2I	TCCGGA	1 cut(s)	412
Ksp22I	TGATCA	1 cut(s)	757
Kzo9I	GATC	5 cut(s)	107, 415, 547, 720, 757
LmnI	GCTCC	3 cut(s)	277, 301, 509
Lsp1109I	GCAGC	1 cut(s)	1128
LweI	GCATC	3 cut(s)	468, 518, 540
MaeI	CTAG	3 cut(s)	69, 573, 1100
MaeII	ACGT	1 cut(s)	600
MaeIII	GTNAC	1 cut(s)	751
MalI	GATC	5 cut(s)	109, 417, 549, 722, 759
MbiI	CCGCTC	1 cut(s)	512
MboI	GATC	5 cut(s)	107, 415, 547, 720, 757
MboII	GAAGA	3 cut(s)	406, 833, 1141
MflI	RGATCY	1 cut(s)	415
MhlI	GDGCHC	2 cut(s)	492, 1067
MluCI	AATT	4 cut(s)	186, 426, 1108, 1180
MlyI	GAGTC	5 cut(s)	283, 349, 833, 1084, 1090
MmeI	TCCRAC	1 cut(s)	294
Mph1103I	ATGCAT	1 cut(s)	533
MroI	TCCGGA	1 cut(s)	412
MseI	TTAA	3 cut(s)	17, 657, 683
MspCI	CTTAAG	1 cut(s)	682
MspI	CCGG	6 cut(s)	281, 413, 777, 802, 1061, 1134
MspR9I	CCNGG	4 cut(s)	105, 594, 803, 1062
MvaI	CCWGG	2 cut(s)	105, 594
MvnI	CGCG	1 cut(s)	264
MwoI	GCNNNNNNNGC	5 cut(s)	27, 487, 537, 589, 858
NciI	CCSGG	2 cut(s)	803, 1062
NdeII	GATC	5 cut(s)	107, 415, 547, 720, 757
NlaIII	CATG	5 cut(s)	30, 38, 410, 785, 797
NlaIV	GGNNCC	5 cut(s)	102, 279, 382, 417, 578
NmuCI	GTSAC	1 cut(s)	751
NsiI	ATGCAT	1 cut(s)	533
NspI	RCATGY	3 cut(s)	38, 410, 785
PaqCI	CACCTGC	1 cut(s)	531
PciI	ACATGT	1 cut(s)	406
PfeI	GAWTC	7 cut(s)	202, 208, 439, 451, 569, 716, 766
PkrI	GCNGC	2 cut(s)	263, 1118
Ple19I	CGATCG	1 cut(s)	723
PleI	GAGTC	5 cut(s)	283, 349, 832, 1084, 1090
PpsI	GAGTC	5 cut(s)	283, 349, 832, 1084, 1090
Ppu21I	YACGTR	1 cut(s)	601
PpuMI	RGGWCCY	1 cut(s)	101
PscI	ACATGT	1 cut(s)	406
PshAI	GACNNNNGTC	1 cut(s)	379
PsiI	TTATAA	1 cut(s)	555
Psp5II	RGGWCCY	1 cut(s)	101
Psp6I	CCWGG	2 cut(s)	103, 592
PspGI	CCWGG	2 cut(s)	103, 592
PspN4I	GGNNCC	5 cut(s)	102, 279, 382, 417, 578
PspPI	GGNCC	3 cut(s)	101, 381, 577
PspPPI	RGGWCCY	1 cut(s)	101
PsuI	RGATCY	1 cut(s)	415
PvuI	CGATCG	1 cut(s)	723
RsaI	GTAC	2 cut(s)	368, 599
RsaNI	GTAC	2 cut(s)	367, 598
SaqAI	TTAA	3 cut(s)	17, 657, 683
SatI	GCNGC	2 cut(s)	262, 1117
Sau3AI	GATC	5 cut(s)	107, 415, 547, 720, 757
Sau96I	GGNCC	3 cut(s)	101, 381, 577
ScaI	AGTACT	1 cut(s)	368
SchI	GAGTC	5 cut(s)	283, 349, 833, 1084, 1090
ScrFI	CCNGG	4 cut(s)	105, 594, 803, 1062
SduI	GDGCHC	2 cut(s)	492, 1067
SfaNI	GCATC	3 cut(s)	468, 518, 540
SinI	GGWCC	2 cut(s)	101, 381
SmlI	CTYRAG	1 cut(s)	682
SmoI	CTYRAG	1 cut(s)	682
SnaBI	TACGTA	1 cut(s)	601
SpeI	ACTAGT	1 cut(s)	68
Sse9I	AATT	4 cut(s)	186, 426, 1108, 1180
SsiI	CCGC	2 cut(s)	262, 512
SspMI	CTAG	3 cut(s)	69, 573, 1100
StyD4I	CCNGG	4 cut(s)	103, 592, 801, 1060
TaaI	ACNGT	3 cut(s)	338, 366, 694
TaiI	ACGT	1 cut(s)	603
TaqI	TCGA	6 cut(s)	138, 246, 534, 719, 819, 1057
TasI	AATT	4 cut(s)	186, 426, 1108, 1180
TatI	WGTACW	1 cut(s)	366
TauI	GCSGC	1 cut(s)	264
TfiI	GAWTC	7 cut(s)	202, 208, 439, 451, 569, 716, 766
Tru1I	TTAA	3 cut(s)	17, 657, 683
Tru9I	TTAA	3 cut(s)	17, 657, 683
TscAI	CASTG	7 cut(s)	181, 343, 453, 641, 760, 838, 847
TseFI	GTSAC	1 cut(s)	751
TseI	GCWGC	1 cut(s)	1116
Tsp45I	GTSAC	1 cut(s)	751
TspDTI	ATGAA	1 cut(s)	779
TspGWI	ACGGA	3 cut(s)	406, 581, 975
TspRI	CASTG	7 cut(s)	181, 343, 453, 641, 760, 838, 847
Vha464I	CTTAAG	1 cut(s)	682
VneI	GTGCAC	1 cut(s)	488
VpaK11BI	GGWCC	2 cut(s)	101, 381
XapI	RAATTY	1 cut(s)	1180
XceI	RCATGY	3 cut(s)	38, 410, 785
XspI	CTAG	3 cut(s)	69, 573, 1100
ZrmI	AGTACT	1 cut(s)	368
Zsp2I	ATGCAT	1 cut(s)	533

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.