FvH4_5g09784

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0001567
Physical Location & Seq
Forward (+)
5622734 .. 5625444
2711 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g09784.t1

Sequence Viewer

Length: 1263 bp
ATGGTACCTTCTTGTCAGAGTTTGGTGCTTTTGTTAGCTGTGCTAGTACTGGGATTAAGCTTACCATGTTCAGATGCTATTCGGATCAATAAGGTTAAGACCACGACTAGCGTTTATCTCTCCCCTAAGTTTGTGTTGGAACCAGGGTCAGTTGCAGACAAGTATTTTTATAACATTCAATTCCCAAGAGGTCATATTGCTATGAAGTATTTCAATGCTGAAGTGGTTGATGAAGAAGGGAATCCTGTTCCTCTTCATGAGACTTATCTGCATCATTGGGTTATTGAAAGATATTACGCCGAGACTAGTTATGTGGAACCGGTGCTGAGTGGTTTTGAGGATATTAAAGATCCAGAGTTTAAGATTGTGAGGAATAGTGGATTGTGCCAGAATGATGCTCTTGGACAGTACTATGGACTCGGGTCAGAAACACGGAAAACAGACACACATGTACCGGATCCTTTTGGAATAGAGATTGGCAACCCTGCAGATATTCCTGCTGGATATGAGGAGAGATGGATGCTCAATGTTCATGCTATTGATACTCGGGGTGCAGTGGATAAGTTGGGATGCACTGAATGCAGGTGTGATCTGTATAATGTGACAAAAGACGGAAAAGGCCAGCCTTTGAGGCCAGGGTACACAGGGGGTTTGTACTGCTGTTATGATGGTACACACTGCAGCGTAAAACAAGGCAATAATGGTGTCAAGAGAAGCCTCTACTTGAGATACACTGTGAAGTGGGTTGATTGGTCTGATTCTATTGTGCCTGTCAAGATTTATATCTTTGATGTCACTGATAGACCAGATCATTCAGCAGGACCCTCTCCTAAACATGATTGCCGGGTCGAATATAATGTTGAGCCTTGCAGTACTGTTGATGCTGTAAATGATCGGTGCTTTCACAATCAACAGGCAGTAATCACTTTGCCAACTGGTGGTTATATCATCTATGGTGTAGCGCATCAGCACACCGGGGGGCTCGGCGCAACTCTATATAGAGAGGACGGTCGGGTTCTATGTTCATCAATACCAATTTATGGACAAAGCGAGGACGTTGGAGATGAGGCTGGTTACATTGTAGGAATGTCAACTTGCTATCCACATCCGGGCTCCATCAAAATAAATGATGGGGAGACTCTGGTTGTGGGATCTAATTACAGCAGCTCACAGCGGCACACAGGAGTCATGGGCCTCTTCTACATTTTGGTTGCGGAGCACCTTCTAAAGTCCTCCTTGCTTAGCTTGGACTCTTCACTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SURNod19

Protein Analysis

421

Amino Acids

46.43

Weight (kDa)

5.5

Isoelectric Point (pI)

36.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SURNod19 PF07712 34 - 407 1.1e-183 Stress up-regulated Nod 19
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 171
AarI CACCTGC 1 cut(s) 573
Acc36I ACCTGC 1 cut(s) 573
Acc65I GGTACC 1 cut(s) 4
AccB1I GGYRCC 1 cut(s) 4
AccB7I CCANNNNNTGG 2 cut(s) 938, 1040
AciI CCGC 2 cut(s) 1174, 1214
AclWI GGATC 5 cut(s) 92, 344, 452, 465, 1159
AcuI CTGAAG 1 cut(s) 240
AfaI GTAC 8 cut(s) 6, 48, 410, 453, 641, 656, 673, 874
AfiI CCNNNNNNNGG 3 cut(s) 938, 1040, 1109
AflIII ACRYGT 1 cut(s) 448
AgeI ACCGGT 1 cut(s) 319
AgsI TTSAA 3 cut(s) 179, 214, 287
AhlI ACTAGT 1 cut(s) 305
AjnI CCWGG 2 cut(s) 142, 634
AluBI AGCT 4 cut(s) 38, 60, 1167, 1245
AluI AGCT 4 cut(s) 38, 60, 1167, 1245
Alw21I GWGCWC 1 cut(s) 1221
Alw26I GTCTC 3 cut(s) 254, 296, 1130
AlwI GGATC 5 cut(s) 92, 344, 452, 465, 1159
Ama87I CYCGRG 2 cut(s) 419, 546
AoxI GGCC 3 cut(s) 619, 632, 1192
ApeKI GCWGC 2 cut(s) 681, 1164
AsiGI ACCGGT 1 cut(s) 319
Asp700I GAANNNNTTC 1 cut(s) 209
Asp718I GGTACC 1 cut(s) 4
AspLEI GCGC 2 cut(s) 964, 989
AspS9I GGNCC 2 cut(s) 821, 1192
AsuC2I CCSGG 3 cut(s) 845, 976, 1110
AvaI CYCGRG 2 cut(s) 419, 546
AvaII GGWCC 1 cut(s) 821
BaeI ACNNNNGTAYC 2 cut(s) 435, 468
BamHI GGATCC 1 cut(s) 457
BanI GGYRCC 1 cut(s) 4
BanII GRGCYC 2 cut(s) 984, 1115
Bbv12I GWGCWC 1 cut(s) 1221
BbvI GCAGC 2 cut(s) 693, 1176
BccI CCATC 4 cut(s) 510, 662, 1124, 1124
BciT130I CCWGG 2 cut(s) 144, 636
BcnI CCSGG 3 cut(s) 845, 976, 1110
BcoDI GTCTC 3 cut(s) 254, 296, 1130
BcuI ACTAGT 1 cut(s) 305
BfaI CTAG 3 cut(s) 44, 108, 306
BfmI CTRYAG 2 cut(s) 486, 679
BfuAI ACCTGC 1 cut(s) 573
BglI GCCNNNNNGGC 1 cut(s) 631
BisI GCNGC 3 cut(s) 682, 1165, 1175
BlpI GCTNAGC 1 cut(s) 1241
BlsI GCNGC 3 cut(s) 683, 1166, 1176
BmcAI AGTACT 3 cut(s) 48, 410, 874
Bme1390I CCNGG 5 cut(s) 144, 636, 845, 976, 1110
Bme18I GGWCC 1 cut(s) 821
BmeT110I CYCGRG 2 cut(s) 419, 546
BmgT120I GGNCC 2 cut(s) 821, 1192
BmiI GGNNCC 6 cut(s) 6, 141, 318, 459, 823, 1114
BmrFI CCNGG 5 cut(s) 144, 636, 845, 976, 1110
BmrI ACTGGG 1 cut(s) 59
BmsI GCATC 7 cut(s) 64, 280, 385, 510, 560, 871, 973
BmuI ACTGGG 1 cut(s) 59
BoxI GACNNNNGTC 1 cut(s) 421
Bpu1102I GCTNAGC 1 cut(s) 1241
BpuEI CTTGAG 1 cut(s) 745
BpuMI CCSGG 3 cut(s) 845, 976, 1110
BsaBI GATNNNNATC 1 cut(s) 782
BsaJI CCNNGG 3 cut(s) 143, 635, 975
BsaWI WCCGGW 2 cut(s) 319, 454
Bsc4I CCNNNNNNNGG 3 cut(s) 938, 1040, 1109
Bse118I RCCGGY 1 cut(s) 319
Bse1I ACTGG 2 cut(s) 54, 940
Bse8I GATNNNNATC 1 cut(s) 782
BseBI CCWGG 2 cut(s) 144, 636
BseDI CCNNGG 3 cut(s) 143, 635, 975
BseGI GGATG 3 cut(s) 525, 575, 1105
BseJI GATNNNNATC 1 cut(s) 782
BseLI CCNNNNNNNGG 3 cut(s) 938, 1040, 1109
BseMII CTCAG 1 cut(s) 317
BseNI ACTGG 2 cut(s) 54, 940
BseRI GAGGAG 1 cut(s) 524
BseXI GCAGC 2 cut(s) 693, 1176
BsgI GTGCAG 1 cut(s) 573
Bsh1285I CGRYCG 1 cut(s) 1012
BshFI GGCC 3 cut(s) 621, 634, 1194
BshNI GGYRCC 1 cut(s) 4
BshTI ACCGGT 1 cut(s) 319
BsiEI CGRYCG 1 cut(s) 1012
BsiHKAI GWGCWC 1 cut(s) 1221
BsiHKCI CYCGRG 2 cut(s) 419, 546
BsiSI CCGG 5 cut(s) 320, 455, 844, 975, 1109
BslI CCNNNNNNNGG 3 cut(s) 938, 1040, 1109
BsmAI GTCTC 3 cut(s) 254, 296, 1130
BsmI GAATGC 1 cut(s) 584
BsnI GGCC 3 cut(s) 621, 634, 1194
BsoBI CYCGRG 2 cut(s) 419, 546
Bsp1286I GDGCHC 3 cut(s) 984, 1115, 1221
Bsp143I GATC 7 cut(s) 84, 349, 457, 589, 808, 892, 1151
Bsp1720I GCTNAGC 1 cut(s) 1241
BspACI CCGC 2 cut(s) 1174, 1214
BspANI GGCC 3 cut(s) 621, 634, 1194
BspCNI CTCAG 1 cut(s) 318
BspHI TCATGA 1 cut(s) 256
BspLI GGNNCC 6 cut(s) 6, 141, 318, 459, 823, 1114
BspMAI CTGCAG 2 cut(s) 490, 683
BspMI ACCTGC 1 cut(s) 573
BspPI GGATC 5 cut(s) 92, 344, 452, 465, 1159
BspT107I GGYRCC 1 cut(s) 4
BsrFI RCCGGY 1 cut(s) 319
BsrI ACTGG 2 cut(s) 54, 940
BssAI RCCGGY 1 cut(s) 319
BssECI CCNNGG 3 cut(s) 143, 635, 975
BssMI GATC 7 cut(s) 84, 349, 457, 589, 808, 892, 1151
Bst2UI CCWGG 2 cut(s) 144, 636
Bst4CI ACNGT 4 cut(s) 408, 736, 877, 1010
Bst6I CTCTTC 3 cut(s) 258, 1202, 1258
BstAPI GCANNNNNTGC 1 cut(s) 579
BstC8I GCNNGC 1 cut(s) 623
BstDEI CTNAG 3 cut(s) 126, 326, 1241
BstF5I GGATG 3 cut(s) 525, 575, 1105
BstHHI GCGC 2 cut(s) 964, 989
BstKTI GATC 7 cut(s) 87, 352, 460, 592, 811, 895, 1154
BstMAI GTCTC 3 cut(s) 254, 296, 1130
BstMBI GATC 7 cut(s) 84, 349, 457, 589, 808, 892, 1151
BstMCI CGRYCG 1 cut(s) 1012
BstMWI GCNNNNNNNGC 2 cut(s) 579, 631
BstNI CCWGG 2 cut(s) 144, 636
BstNSI RCATGY 1 cut(s) 452
BstPAI GACNNNNGTC 1 cut(s) 421
BstSCI CCNGG 5 cut(s) 142, 634, 843, 974, 1108
BstSFI CTRYAG 2 cut(s) 486, 679
BstV1I GCAGC 2 cut(s) 693, 1176
BstX2I RGATCY 3 cut(s) 349, 457, 1151
BstYI RGATCY 3 cut(s) 349, 457, 1151
BsuRI GGCC 3 cut(s) 621, 634, 1194
BtsCI GGATG 3 cut(s) 525, 575, 1105
BtsI GCAGTG 2 cut(s) 561, 676
BtsIMutI CAGTG 5 cut(s) 561, 573, 676, 732, 795
BveI ACCTGC 1 cut(s) 573
Cac8I GCNNGC 1 cut(s) 623
CciI TCATGA 1 cut(s) 256
CfoI GCGC 2 cut(s) 964, 989
Cfr10I RCCGGY 1 cut(s) 319
Cfr13I GGNCC 2 cut(s) 821, 1192
Csp6I GTAC 8 cut(s) 5, 47, 409, 452, 640, 655, 672, 873
CspAI ACCGGT 1 cut(s) 319
CviAII CATG 6 cut(s) 66, 257, 449, 533, 836, 1189
CviQI GTAC 8 cut(s) 5, 47, 409, 452, 640, 655, 672, 873
DdeI CTNAG 3 cut(s) 126, 326, 1241
DpnI GATC 7 cut(s) 86, 351, 459, 591, 810, 894, 1153
DpnII GATC 7 cut(s) 84, 349, 457, 589, 808, 892, 1151
Eam1104I CTCTTC 3 cut(s) 258, 1202, 1258
EarI CTCTTC 3 cut(s) 258, 1202, 1258
Eco24I GRGCYC 2 cut(s) 984, 1115
Eco47I GGWCC 1 cut(s) 821
Eco57I CTGAAG 1 cut(s) 240
Eco88I CYCGRG 2 cut(s) 419, 546
EcoO109I RGGNCCY 1 cut(s) 821
EcoRII CCWGG 2 cut(s) 142, 634
EcoT38I GRGCYC 2 cut(s) 984, 1115
FaeI CATG 6 cut(s) 69, 260, 452, 536, 839, 1192
FalI AAGNNNNNCTT 2 cut(s) 1220, 1252
FatI CATG 6 cut(s) 65, 256, 448, 532, 835, 1188
Fnu4HI GCNGC 3 cut(s) 682, 1165, 1175
FokI GGATG 3 cut(s) 532, 582, 1092
FriOI GRGCYC 2 cut(s) 984, 1115
Fsp4HI GCNGC 3 cut(s) 682, 1165, 1175
FspBI CTAG 3 cut(s) 44, 108, 306
GlaI GCGC 2 cut(s) 963, 988
GluI GCNGC 3 cut(s) 682, 1165, 1175
HaeIII GGCC 3 cut(s) 621, 634, 1194
HapII CCGG 5 cut(s) 320, 455, 844, 975, 1109
HhaI GCGC 2 cut(s) 964, 989
Hin1II CATG 6 cut(s) 69, 260, 452, 536, 839, 1192
Hin6I GCGC 2 cut(s) 962, 987
HinP1I GCGC 2 cut(s) 962, 987
HincII GTYRAC 1 cut(s) 1092
HindII GTYRAC 1 cut(s) 1092
HindIII AAGCTT 1 cut(s) 58
HinfI GANTC 6 cut(s) 241, 417, 758, 1138, 1185, 1250
HpaII CCGG 5 cut(s) 320, 455, 844, 975, 1109
Hpy166II GTNNAC 3 cut(s) 642, 674, 1092
Hpy188I TCNGA 5 cut(s) 18, 73, 84, 427, 757
Hpy188III TCNNGA 4 cut(s) 257, 353, 709, 775
Hpy8I GTNNAC 3 cut(s) 642, 674, 1092
HpyAV CCTTC 3 cut(s) 18, 230, 1232
HpyCH4III ACNGT 4 cut(s) 408, 736, 877, 1010
HpyCH4IV ACGT 1 cut(s) 1056
HpyCH4V TGCA 8 cut(s) 155, 271, 488, 554, 573, 582, 681, 870
HpyF10VI GCNNNNNNNGC 2 cut(s) 579, 631
HpyF3I CTNAG 3 cut(s) 126, 326, 1241
HpySE526I ACGT 1 cut(s) 1056
Hsp92II CATG 6 cut(s) 69, 260, 452, 536, 839, 1192
HspAI GCGC 2 cut(s) 962, 987
KpnI GGTACC 1 cut(s) 8
Kzo9I GATC 7 cut(s) 84, 349, 457, 589, 808, 892, 1151
LmnI GCTCC 2 cut(s) 1118, 1216
Lsp1109I GCAGC 2 cut(s) 693, 1176
LweI GCATC 7 cut(s) 64, 280, 385, 510, 560, 871, 973
MaeI CTAG 3 cut(s) 44, 108, 306
MaeII ACGT 1 cut(s) 1056
MaeIII GTNAC 3 cut(s) 601, 793, 1073
MalI GATC 7 cut(s) 86, 351, 459, 591, 810, 894, 1153
MboI GATC 7 cut(s) 84, 349, 457, 589, 808, 892, 1151
MboII GAAGA 4 cut(s) 245, 245, 1189, 1245
MflI RGATCY 3 cut(s) 349, 457, 1151
MhlI GDGCHC 3 cut(s) 984, 1115, 1221
MluCI AATT 3 cut(s) 179, 1035, 1156
MlyI GAGTC 4 cut(s) 411, 1132, 1194, 1244
MmeI TCCRAC 2 cut(s) 117, 1039
MroXI GAANNNNTTC 1 cut(s) 209
MseI TTAA 4 cut(s) 56, 96, 345, 360
MspA1I CMGCKG 1 cut(s) 1174
MspI CCGG 5 cut(s) 320, 455, 844, 975, 1109
MspR9I CCNGG 5 cut(s) 144, 636, 845, 976, 1110
Mva1269I GAATGC 1 cut(s) 584
MvaI CCWGG 2 cut(s) 144, 636
MwoI GCNNNNNNNGC 2 cut(s) 579, 631
NciI CCSGG 3 cut(s) 845, 976, 1110
NdeII GATC 7 cut(s) 84, 349, 457, 589, 808, 892, 1151
NlaIII CATG 6 cut(s) 69, 260, 452, 536, 839, 1192
NlaIV GGNNCC 6 cut(s) 6, 141, 318, 459, 823, 1114
NmeAIII GCCGAG 2 cut(s) 325, 963
NmuCI GTSAC 2 cut(s) 601, 793
NspI RCATGY 1 cut(s) 452
PagI TCATGA 1 cut(s) 256
PaqCI CACCTGC 1 cut(s) 573
PciI ACATGT 1 cut(s) 448
PctI GAATGC 1 cut(s) 584
PdmI GAANNNNTTC 1 cut(s) 209
PfeI GAWTC 2 cut(s) 241, 758
PflMI CCANNNNNTGG 2 cut(s) 938, 1040
PinAI ACCGGT 1 cut(s) 319
PkrI GCNGC 3 cut(s) 683, 1166, 1176
PleI GAGTC 4 cut(s) 411, 1132, 1193, 1244
PpsI GAGTC 4 cut(s) 411, 1132, 1193, 1244
PpuMI RGGWCCY 1 cut(s) 821
PscI ACATGT 1 cut(s) 448
PshAI GACNNNNGTC 1 cut(s) 421
PsiI TTATAA 1 cut(s) 171
Psp5II RGGWCCY 1 cut(s) 821
Psp6I CCWGG 2 cut(s) 142, 634
PspGI CCWGG 2 cut(s) 142, 634
PspN4I GGNNCC 6 cut(s) 6, 141, 318, 459, 823, 1114
PspPI GGNCC 2 cut(s) 821, 1192
PspPPI RGGWCCY 1 cut(s) 821
PstI CTGCAG 2 cut(s) 490, 683
PsuI RGATCY 3 cut(s) 349, 457, 1151
RsaI GTAC 8 cut(s) 6, 48, 410, 453, 641, 656, 673, 874
RsaNI GTAC 8 cut(s) 5, 47, 409, 452, 640, 655, 672, 873
SaqAI TTAA 4 cut(s) 56, 96, 345, 360
SatI GCNGC 3 cut(s) 682, 1165, 1175
Sau3AI GATC 7 cut(s) 84, 349, 457, 589, 808, 892, 1151
Sau96I GGNCC 2 cut(s) 821, 1192
ScaI AGTACT 3 cut(s) 48, 410, 874
SchI GAGTC 4 cut(s) 411, 1132, 1194, 1244
ScrFI CCNGG 5 cut(s) 144, 636, 845, 976, 1110
SduI GDGCHC 3 cut(s) 984, 1115, 1221
SfaNI GCATC 7 cut(s) 64, 280, 385, 510, 560, 871, 973
SfcI CTRYAG 2 cut(s) 486, 679
SinI GGWCC 1 cut(s) 821
SmlI CTYRAG 1 cut(s) 724
SmoI CTYRAG 1 cut(s) 724
SpeI ACTAGT 1 cut(s) 305
Sse9I AATT 3 cut(s) 179, 1035, 1156
SsiI CCGC 2 cut(s) 1174, 1214
SspMI CTAG 3 cut(s) 44, 108, 306
StyD4I CCNGG 5 cut(s) 142, 634, 843, 974, 1108
TaaI ACNGT 4 cut(s) 408, 736, 877, 1010
TaiI ACGT 1 cut(s) 1059
TaqI TCGA 1 cut(s) 849
TasI AATT 3 cut(s) 179, 1035, 1156
TatI WGTACW 4 cut(s) 46, 408, 654, 872
TauI GCSGC 1 cut(s) 1177
TfiI GAWTC 2 cut(s) 241, 758
Tru1I TTAA 4 cut(s) 56, 96, 345, 360
Tru9I TTAA 4 cut(s) 56, 96, 345, 360
TscAI CASTG 5 cut(s) 561, 580, 683, 739, 802
TseFI GTSAC 2 cut(s) 601, 793
TseI GCWGC 2 cut(s) 681, 1164
Tsp45I GTSAC 2 cut(s) 601, 793
TspDTI ATGAA 5 cut(s) 218, 245, 246, 521, 1014
TspGWI ACGGA 2 cut(s) 448, 627
TspRI CASTG 5 cut(s) 561, 580, 683, 739, 802
Van91I CCANNNNNTGG 2 cut(s) 938, 1040
VpaK11BI GGWCC 1 cut(s) 821
XceI RCATGY 1 cut(s) 452
XmnI GAANNNNTTC 1 cut(s) 209
XspI CTAG 3 cut(s) 44, 108, 306
ZrmI AGTACT 3 cut(s) 48, 410, 874
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.