Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0002033

Physical Location & Seq

Genomic Coordinates Forward (+)

1123376 .. 1126290

Gene Structure 2915 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g02111.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1080 bp

ATGGCTCTCCTTCATGCTGGTAATGATTCAGTGAAGTTGTCCATGAGTGTCCAGGAGATGTCCATGAAAGGTGATGAACCACCCCCTGAATATATTGTTAAAGATAGCAAGTTTGGAGCTATAGAGTCTTCACCAGAATTGGGTCAAATCCCCAGCATTGATGTCAGTCTCTTCTCCCCATCATCACTTGATTCTAAGCAAGCGAAGATCGAACTTGACAAACTTAGAACAGCTCTCAGCTCATCAGGCTGCATTCAGGCAATTGGTCATGGGATATCAAGTTCCTTTCTGGACAAGGTACGCGAAGCTGCGACACAATTCTTTGAACTTCCAGTGGAAGAGAAGGAAAAGTACTCCAGATCTGTTCATGGTGGCTCTGAAGGGTATGGGAATGATGTCATTGTCTCAGAGAAGCAAGTTCTCGATTGGTCCTATAGACTAACACTAAGAGTATTCCCTGAAGATCAAAGAAGGCTTAATCTTTGGCCAAAAAATCCAACTGACTTTGGAGAGGTTGTGCATGAATATGCAACAAAGGTAAAATATATGATTGGTGTGCTGTTTAAGGCCATGGCAAAATCGTTGAATTTGGAGGAGAACAGCTTTTCAGATCACTTGTTTGGAGAGGGAGCTCTGATGCAAGCAAGATTCAACTTCTATCCGCGGTGTTCAAGATCCGATCAGGTCCTTGGTGTCAAGCCACATACAGATAGGTCAGGAGTGACAGTTCTGTTGCAAGACAAAGAAGTGGAAGGTCTTCAACTTTTGGTAGATGGGAAATGGGTTAGAGTCCCCATTGTGCCTCATGCTATAGTTGTTAATCTTGGTGATCAAATGCAGATTATGAGTAATGGTATCTTCAAGAGCCCAATGCACAGGGTTGTGACAAATCCAGACAGAATGAGACTATCTGTGGCCTTGTTTAATGAACCTGATCCTGAAACTGAAATTAGTCCTGTGGAGAAACTGATAGTTGAGACAAGGCCACGGTTATATAAAACTGTCAAGAATTATGGTCGTATCAACTATGAATGCTATCAGAGAGGAGAGGTAGCACTTGAAACAGTAAAAATCAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

360

Amino Acids

40.33

Weight (kDa)

5.97

Isoelectric Point (pI)

43.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	50 - 165	6.7e-23	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	216 - 311	4.5e-31	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002033)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g02111 FvH4_1g02112 FvH4_1g02120
malus_domestica	MD02G1019300.v1.1 MD02G1019600.v1.1
prunus_persica	Prupe.7G251800_v2.0.a1 Prupe.7G251800_v2.0.a1
pyrus_communis	pycom02g01720 pycom02g01730 pycom02g01740
rosa_chinensis	RchiOBHm_Chr2g0087171 RchiOBHm_Chr2g0087181 RchiOBHm_Chr2g0087191 RchiOBHm_Chr2g0087251 RchiOBHm_Chr6g0295511
rosa_laevigata	RLG00000011795 RLG00000015839 RLG00000015840 RLG00000015841 RLG00000015843 RLG00000015847
rosa_multiflora	Rmu_co8200202.1_g000001 Rmu_sc0003367.1_g000007 Rmu_sc0009355.1_g000005 Rmu_sc0009802.1_g000001 Rmu_sc0011562.1_g000001 Rmu_sc0018794.1_g000006 Rmu_ssc0000239.1_g000011
rosa_roxburghii	Rroxscaffold_2G00153820 Rroxscaffold_7G00172410
rosa_rugosa	Rorug01G0473200 Rorug01G0473600 Rorug06G0251600
rosa_samantha	Rh2AG026300 Rh2AG026500 Rh2AG027000 Rh2CG026800 Rh2CG026900 Rh2CG027000 Rh2CG027400 Rh2DG026600 Rh6BG373100 Rh6CG379300 Rh6DG365800
rosa_wichuraiana	Rw2G002110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	303, 664
AciI	CCGC	2 cut(s)	662, 664
AclWI	GGATC	2 cut(s)	669, 929
AcoI	YGGCCR	1 cut(s)	485
AcsI	RAATTY	1 cut(s)	586
AcuI	CTGAAG	2 cut(s)	399, 480
AfaI	GTAC	2 cut(s)	300, 353
AfiI	CCNNNNNNNGG	1 cut(s)	140
AgsI	TTSAA	7 cut(s)	326, 586, 652, 672, 761, 862, 1061
AjnI	CCWGG	1 cut(s)	51
AloI	GAACNNNNNNTCC	4 cut(s)	265, 297, 711, 743
AluBI	AGCT	7 cut(s)	119, 233, 240, 308, 603, 632, 1077
AluI	AGCT	7 cut(s)	119, 233, 240, 308, 603, 632, 1077
Alw21I	GWGCWC	1 cut(s)	634
Alw26I	GTCTC	4 cut(s)	173, 409, 898, 971
AlwI	GGATC	2 cut(s)	669, 929
AoxI	GGCC	4 cut(s)	485, 567, 915, 983
ApeKI	GCWGC	2 cut(s)	249, 308
ApoI	RAATTY	1 cut(s)	586
Asp700I	GAANNNNTTC	1 cut(s)	756
AspS9I	GGNCC	2 cut(s)	429, 685
AsuHPI	GGTGA	3 cut(s)	83, 123, 839
AvaII	GGWCC	2 cut(s)	429, 685
BalI	TGGCCA	1 cut(s)	487
BanII	GRGCYC	2 cut(s)	634, 869
BarI	GAAGNNNNNNTAC	2 cut(s)	335, 367
BbsI	GAAGAC	2 cut(s)	120, 749
Bbv12I	GWGCWC	1 cut(s)	634
BbvI	GCAGC	2 cut(s)	236, 295
BccI	CCATC	2 cut(s)	187, 767
BciT130I	CCWGG	1 cut(s)	53
BclI	TGATCA	1 cut(s)	829
BcoDI	GTCTC	4 cut(s)	173, 409, 898, 971
BfaI	CTAG	1 cut(s)	1078
BfmI	CTRYAG	3 cut(s)	120, 433, 810
BglII	AGATCT	1 cut(s)	359
BisI	GCNGC	2 cut(s)	250, 309
BlsI	GCNGC	2 cut(s)	251, 310
BmcAI	AGTACT	1 cut(s)	353
Bme1390I	CCNGG	1 cut(s)	53
Bme18I	GGWCC	2 cut(s)	429, 685
BmgT120I	GGNCC	2 cut(s)	429, 685
BmrFI	CCNGG	1 cut(s)	53
BmsI	GCATC	1 cut(s)	627
BpiI	GAAGAC	2 cut(s)	120, 749
BpmI	CTGGAG	1 cut(s)	340
BsaJI	CCNNGG	4 cut(s)	570, 662, 688, 986
BsaXI	ACNNNNNCTCC	4 cut(s)	501, 531, 711, 741
Bsc4I	CCNNNNNNNGG	1 cut(s)	140
Bse1I	ACTGG	1 cut(s)	332
BseBI	CCWGG	1 cut(s)	53
BseDI	CCNNGG	4 cut(s)	570, 662, 688, 986
BseLI	CCNNNNNNNGG	1 cut(s)	140
BseMII	CTCAG	2 cut(s)	250, 420
BseNI	ACTGG	1 cut(s)	332
BseRI	GAGGAG	2 cut(s)	608, 1059
BseXI	GCAGC	2 cut(s)	236, 295
BseYI	CCCAGC	1 cut(s)	152
Bsh1236I	CGCG	2 cut(s)	303, 664
BshFI	GGCC	4 cut(s)	487, 569, 917, 985
BsiHKAI	GWGCWC	1 cut(s)	634
BslFI	GGGAC	1 cut(s)	776
BslI	CCNNNNNNNGG	1 cut(s)	140
BsmAI	GTCTC	4 cut(s)	173, 409, 898, 971
BsmFI	GGGAC	1 cut(s)	776
BsmI	GAATGC	2 cut(s)	252, 1037
BsnI	GGCC	4 cut(s)	487, 569, 917, 985
Bsp1286I	GDGCHC	2 cut(s)	634, 869
Bsp143I	GATC	8 cut(s)	207, 359, 463, 610, 674, 679, 829, 934
Bsp19I	CCATGG	1 cut(s)	570
BspACI	CCGC	2 cut(s)	662, 664
BspANI	GGCC	4 cut(s)	487, 569, 917, 985
BspCNI	CTCAG	2 cut(s)	249, 419
BspFNI	CGCG	2 cut(s)	303, 664
BspPI	GGATC	2 cut(s)	669, 929
BsrI	ACTGG	1 cut(s)	332
BssECI	CCNNGG	4 cut(s)	570, 662, 688, 986
BssMI	GATC	8 cut(s)	207, 359, 463, 610, 674, 679, 829, 934
BssT1I	CCWWGG	2 cut(s)	570, 688
Bst2UI	CCWGG	1 cut(s)	53
Bst4CI	ACNGT	4 cut(s)	727, 990, 1003, 1066
Bst6I	CTCTTC	2 cut(s)	176, 333
BstC8I	GCNNGC	2 cut(s)	201, 642
BstDEI	CTNAG	5 cut(s)	195, 224, 236, 406, 446
BstDSI	CCRYGG	3 cut(s)	570, 662, 986
BstFNI	CGCG	2 cut(s)	303, 664
BstKTI	GATC	8 cut(s)	210, 362, 466, 613, 677, 682, 832, 937
BstMAI	GTCTC	4 cut(s)	173, 409, 898, 971
BstMBI	GATC	8 cut(s)	207, 359, 463, 610, 674, 679, 829, 934
BstMWI	GCNNNNNNNGC	1 cut(s)	246
BstNI	CCWGG	1 cut(s)	53
BstSCI	CCNGG	1 cut(s)	51
BstSFI	CTRYAG	3 cut(s)	120, 433, 810
BstUI	CGCG	2 cut(s)	303, 664
BstV1I	GCAGC	2 cut(s)	236, 295
BstV2I	GAAGAC	2 cut(s)	120, 749
BstX2I	RGATCY	2 cut(s)	359, 674
BstYI	RGATCY	2 cut(s)	359, 674
BsuRI	GGCC	4 cut(s)	487, 569, 917, 985
BtgI	CCRYGG	3 cut(s)	570, 662, 986
BtsIMutI	CAGTG	2 cut(s)	36, 339
Cac8I	GCNNGC	2 cut(s)	201, 642
Cfr13I	GGNCC	2 cut(s)	429, 685
Cfr42I	CCGCGG	1 cut(s)	665
Csp6I	GTAC	2 cut(s)	299, 352
CviAII	CATG	8 cut(s)	14, 43, 64, 269, 368, 521, 571, 806
CviQI	GTAC	2 cut(s)	299, 352
DdeI	CTNAG	5 cut(s)	195, 224, 236, 406, 446
DpnI	GATC	8 cut(s)	209, 361, 465, 612, 676, 681, 831, 936
DpnII	GATC	8 cut(s)	207, 359, 463, 610, 674, 679, 829, 934
EaeI	YGGCCR	1 cut(s)	485
Eam1104I	CTCTTC	2 cut(s)	176, 333
EarI	CTCTTC	2 cut(s)	176, 333
Ecl136II	GAGCTC	1 cut(s)	632
Eco130I	CCWWGG	2 cut(s)	570, 688
Eco24I	GRGCYC	2 cut(s)	634, 869
Eco32I	GATATC	1 cut(s)	276
Eco47I	GGWCC	2 cut(s)	429, 685
Eco53kI	GAGCTC	1 cut(s)	632
Eco57I	CTGAAG	2 cut(s)	399, 480
EcoICRI	GAGCTC	1 cut(s)	632
EcoO109I	RGGNCCY	1 cut(s)	685
EcoRII	CCWGG	1 cut(s)	51
EcoRV	GATATC	1 cut(s)	276
EcoT14I	CCWWGG	2 cut(s)	570, 688
EcoT38I	GRGCYC	2 cut(s)	634, 869
ErhI	CCWWGG	2 cut(s)	570, 688
FaeI	CATG	8 cut(s)	17, 46, 67, 272, 371, 524, 574, 809
FaqI	GGGAC	1 cut(s)	776
FatI	CATG	8 cut(s)	13, 42, 63, 268, 367, 520, 570, 805
FbaI	TGATCA	1 cut(s)	829
Fnu4HI	GCNGC	2 cut(s)	250, 309
FriOI	GRGCYC	2 cut(s)	634, 869
Fsp4HI	GCNGC	2 cut(s)	250, 309
FspBI	CTAG	1 cut(s)	1078
GluI	GCNGC	2 cut(s)	250, 309
GsaI	CCCAGC	1 cut(s)	156
GsuI	CTGGAG	1 cut(s)	340
HaeIII	GGCC	4 cut(s)	487, 569, 917, 985
Hin1II	CATG	8 cut(s)	17, 46, 67, 272, 371, 524, 574, 809
HinfI	GANTC	5 cut(s)	26, 125, 191, 648, 789
HphI	GGTGA	3 cut(s)	83, 123, 839
Hpy188I	TCNGA	6 cut(s)	379, 409, 610, 636, 679, 1041
Hpy188III	TCNNGA	9 cut(s)	290, 357, 422, 672, 717, 862, 893, 938, 1006
HpyAV	CCTTC	5 cut(s)	20, 337, 374, 465, 746
HpyCH4III	ACNGT	4 cut(s)	727, 990, 1003, 1066
HpyCH4V	TGCA	7 cut(s)	252, 520, 530, 640, 736, 838, 874
HpyF10VI	GCNNNNNNNGC	1 cut(s)	246
HpyF3I	CTNAG	5 cut(s)	195, 224, 236, 406, 446
Hsp92II	CATG	8 cut(s)	17, 46, 67, 272, 371, 524, 574, 809
Ksp22I	TGATCA	1 cut(s)	829
KspI	CCGCGG	1 cut(s)	665
Kzo9I	GATC	8 cut(s)	207, 359, 463, 610, 674, 679, 829, 934
LmnI	GCTCC	2 cut(s)	116, 629
Lsp1109I	GCAGC	2 cut(s)	236, 295
LweI	GCATC	1 cut(s)	627
MaeI	CTAG	1 cut(s)	1078
MaeIII	GTNAC	2 cut(s)	721, 883
MalI	GATC	8 cut(s)	209, 361, 465, 612, 676, 681, 831, 936
MboI	GATC	8 cut(s)	207, 359, 463, 610, 674, 679, 829, 934
MboII	GAAGA	7 cut(s)	120, 163, 217, 350, 473, 749, 850
MfeI	CAATTG	1 cut(s)	261
MflI	RGATCY	2 cut(s)	359, 674
MhlI	GDGCHC	2 cut(s)	634, 869
MlsI	TGGCCA	1 cut(s)	487
MluCI	AATT	6 cut(s)	137, 261, 317, 586, 948, 1009
MluNI	TGGCCA	1 cut(s)	487
MlyI	GAGTC	2 cut(s)	134, 798
MmeI	TCCRAC	1 cut(s)	521
MnlI	CCTC	6 cut(s)	505, 586, 619, 813, 1037, 1042
Mox20I	TGGCCA	1 cut(s)	487
MroXI	GAANNNNTTC	1 cut(s)	756
MscI	TGGCCA	1 cut(s)	487
MseI	TTAA	5 cut(s)	99, 477, 564, 819, 924
MslI	CAYNNNNRTG	1 cut(s)	525
Msp20I	TGGCCA	1 cut(s)	487
MspA1I	CMGCKG	1 cut(s)	664
MspR9I	CCNGG	1 cut(s)	53
MunI	CAATTG	1 cut(s)	261
Mva1269I	GAATGC	2 cut(s)	252, 1037
MvaI	CCWGG	1 cut(s)	53
MvnI	CGCG	2 cut(s)	303, 664
MwoI	GCNNNNNNNGC	1 cut(s)	246
NcoI	CCATGG	1 cut(s)	570
NdeII	GATC	8 cut(s)	207, 359, 463, 610, 674, 679, 829, 934
NlaIII	CATG	8 cut(s)	17, 46, 67, 272, 371, 524, 574, 809
NmuCI	GTSAC	2 cut(s)	721, 883
PctI	GAATGC	2 cut(s)	252, 1037
PdmI	GAANNNNTTC	1 cut(s)	756
PfeI	GAWTC	3 cut(s)	26, 191, 648
PfoI	TCCNGGA	1 cut(s)	51
PkrI	GCNGC	2 cut(s)	251, 310
PleI	GAGTC	2 cut(s)	133, 797
PpsI	GAGTC	2 cut(s)	133, 797
PpuMI	RGGWCCY	1 cut(s)	685
Psp124BI	GAGCTC	1 cut(s)	634
Psp5II	RGGWCCY	1 cut(s)	685
Psp6I	CCWGG	1 cut(s)	51
PspFI	CCCAGC	1 cut(s)	152
PspGI	CCWGG	1 cut(s)	51
PspPI	GGNCC	2 cut(s)	429, 685
PspPPI	RGGWCCY	1 cut(s)	685
PsuI	RGATCY	2 cut(s)	359, 674
RsaI	GTAC	2 cut(s)	300, 353
RsaNI	GTAC	2 cut(s)	299, 352
RseI	CAYNNNNRTG	1 cut(s)	525
SacI	GAGCTC	1 cut(s)	634
SacII	CCGCGG	1 cut(s)	665
SaqAI	TTAA	5 cut(s)	99, 477, 564, 819, 924
SatI	GCNGC	2 cut(s)	250, 309
Sau3AI	GATC	8 cut(s)	207, 359, 463, 610, 674, 679, 829, 934
Sau96I	GGNCC	2 cut(s)	429, 685
ScaI	AGTACT	1 cut(s)	353
SchI	GAGTC	2 cut(s)	134, 798
ScrFI	CCNGG	1 cut(s)	53
SduI	GDGCHC	2 cut(s)	634, 869
SfaNI	GCATC	1 cut(s)	627
SfcI	CTRYAG	3 cut(s)	120, 433, 810
Sfr303I	CCGCGG	1 cut(s)	665
SgrBI	CCGCGG	1 cut(s)	665
SinI	GGWCC	2 cut(s)	429, 685
SmiMI	CAYNNNNRTG	1 cut(s)	525
Sse9I	AATT	6 cut(s)	137, 261, 317, 586, 948, 1009
SsiI	CCGC	2 cut(s)	662, 664
SspMI	CTAG	1 cut(s)	1078
SstI	GAGCTC	1 cut(s)	634
StyD4I	CCNGG	1 cut(s)	51
StyI	CCWWGG	2 cut(s)	570, 688
TaaI	ACNGT	4 cut(s)	727, 990, 1003, 1066
TaqI	TCGA	2 cut(s)	210, 423
TasI	AATT	6 cut(s)	137, 261, 317, 586, 948, 1009
TatI	WGTACW	1 cut(s)	351
TfiI	GAWTC	3 cut(s)	26, 191, 648
Tru1I	TTAA	5 cut(s)	99, 477, 564, 819, 924
Tru9I	TTAA	5 cut(s)	99, 477, 564, 819, 924
TscAI	CASTG	2 cut(s)	36, 339
TseFI	GTSAC	2 cut(s)	721, 883
TseI	GCWGC	2 cut(s)	249, 308
Tsp45I	GTSAC	2 cut(s)	721, 883
TspDTI	ATGAA	6 cut(s)	80, 90, 356, 537, 942, 1044
TspRI	CASTG	2 cut(s)	36, 339
VpaK11BI	GGWCC	2 cut(s)	429, 685
XapI	RAATTY	1 cut(s)	586
XmnI	GAANNNNTTC	1 cut(s)	756
XspI	CTAG	1 cut(s)	1078
ZrmI	AGTACT	1 cut(s)	353

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.