Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0002033

Physical Location & Seq

Genomic Coordinates Forward (+)

1040667 .. 1042205

Gene Structure 1539 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g01740.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGGCCATGACCAATGTCCAAGAAATGTCTATGAATGGTGAGCAGCCACCAGCCGAATATATTGTTAAAGAAAGTAGGTTTGGATCCATAGATTCTTCTCCACCATTGGCTGATGAAATCCCCATCATTGATATCAGTCTCTTCTCCCCATCATCTCCTCAATATTCTGAACAAGCAGAAAATCATGAGCTACAGAAACTAAGATCAGCACTCAGCTCGGCAGGATGCTTCCAGGCAACAGGCCATGGGATTTCGGATTCACTTCTTGACAAAGTACGTGACGCAGCAAAACAATTCTTTGCACTTCCGGTGGAAGAGAAGGAGAAATACTCCCGAACTATTGACGGCGGCTTCGAGGGATACGGTAATGATGTCATAGTCTCCGACAAACAAGTTCTCGACTGGTCCTATCGTCTTACCCTTAGGGTCTTCCCGCAAGATCAAAGAAAGCTTCATCTTTGGCCACAAATTCCAAATGATTTTGGAGAGATGTTACATGAATATGCAACGAAGATAAAGTTGATGATGGGGTTAGTGTTTAAGGCAATGGCAAAGTCATTGAACTTGGAAGAGAAGAGCTTTGCAACGCAGCTGCTTGGAGATCAATCCCTGATGCAAGCAAGGTTCAACTTTTATCCGCCGTGCTCGAGATCTGACCTGGTCCTCGGCGTCAAGCCTCACACGGATAGGTCCGGCGTGACATGTCTCTTGCAAGACAAGGATGTGGAAGGCCTTCAAGTTTTGATAGATGGAAAATGGGTTAGAGTCCCCATTGTTCCTCATGCTATTGTTCTTAATCTTGGTGATCAGATGCAGATCATGAGCAATGGGATTTACAAGAGCCCCATGCACAGGGTGGTGACAAATGGAGAGAGCATGAGGCTATCAGTTGCTTTGTTCAATGAGCCGGATCCCGAAACGGAAATTGGTCCGGTCGAGGACTCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

316

Amino Acids

35.24

Weight (kDa)

5.02

Isoelectric Point (pI)

45.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	40 - 156	6.3e-26	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	208 - 303	8e-32	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002033)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g02111 FvH4_1g02112 FvH4_1g02120
malus_domestica	MD02G1019300.v1.1 MD02G1019600.v1.1
prunus_persica	Prupe.7G251800_v2.0.a1 Prupe.7G251800_v2.0.a1
pyrus_communis	pycom02g01720 pycom02g01730 pycom02g01740
rosa_chinensis	RchiOBHm_Chr2g0087171 RchiOBHm_Chr2g0087181 RchiOBHm_Chr2g0087191 RchiOBHm_Chr2g0087251 RchiOBHm_Chr6g0295511
rosa_laevigata	RLG00000011795 RLG00000015839 RLG00000015840 RLG00000015841 RLG00000015843 RLG00000015847
rosa_multiflora	Rmu_co8200202.1_g000001 Rmu_sc0003367.1_g000007 Rmu_sc0009355.1_g000005 Rmu_sc0009802.1_g000001 Rmu_sc0011562.1_g000001 Rmu_sc0018794.1_g000006 Rmu_ssc0000239.1_g000011
rosa_roxburghii	Rroxscaffold_2G00153820 Rroxscaffold_7G00172410
rosa_rugosa	Rorug01G0473200 Rorug01G0473600 Rorug06G0251600
rosa_samantha	Rh2AG026300 Rh2AG026500 Rh2AG027000 Rh2CG026800 Rh2CG026900 Rh2CG027000 Rh2CG027400 Rh2DG026600 Rh6BG373100 Rh6CG379300 Rh6DG365800
rosa_wichuraiana	Rw2G002110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	348, 434, 638
AclWI	GGATC	4 cut(s)	78, 91, 905, 918
AcoI	YGGCCR	2 cut(s)	3, 461
AcsI	RAATTY	1 cut(s)	468
AcyI	GRCGYC	1 cut(s)	669
AdeI	CACNNNGTG	1 cut(s)	856
AfaI	GTAC	1 cut(s)	276
AfiI	CCNNNNNNNGG	1 cut(s)	852
AflIII	ACRYGT	1 cut(s)	701
AgsI	TTSAA	4 cut(s)	562, 628, 737, 901
AjnI	CCWGG	2 cut(s)	231, 657
AjuI	GAANNNNNNNTTGG	4 cut(s)	63, 95, 909, 941
AluBI	AGCT	5 cut(s)	190, 216, 451, 579, 592
AluI	AGCT	5 cut(s)	190, 216, 451, 579, 592
Alw21I	GWGCWC	1 cut(s)	647
Alw26I	GTCTC	3 cut(s)	143, 385, 710
AlwI	GGATC	4 cut(s)	78, 91, 905, 918
Ama87I	CYCGRG	1 cut(s)	646
AoxI	GGCC	4 cut(s)	3, 241, 461, 730
ApeKI	GCWGC	4 cut(s)	43, 284, 589, 592
ApoI	RAATTY	1 cut(s)	468
ArsI	GACNNNNNNTTYG	2 cut(s)	335, 367
Asp700I	GAANNNNTTC	1 cut(s)	732
AspS9I	GGNCC	4 cut(s)	405, 661, 690, 929
AsuHPI	GGTGA	3 cut(s)	50, 815, 871
AvaI	CYCGRG	1 cut(s)	646
AvaII	GGWCC	4 cut(s)	405, 661, 690, 929
AxyI	CCTNAGG	1 cut(s)	422
BalI	TGGCCA	2 cut(s)	5, 463
BamHI	GGATCC	2 cut(s)	83, 910
BanII	GRGCYC	1 cut(s)	845
BarI	GAAGNNNNNNTAC	2 cut(s)	311, 343
BauI	CACGAG	1 cut(s)	943
BbsI	GAAGAC	1 cut(s)	421
Bbv12I	GWGCWC	1 cut(s)	647
BbvI	GCAGC	4 cut(s)	55, 296, 579, 601
BccI	CCATC	4 cut(s)	131, 157, 520, 743
BceAI	ACGGC	2 cut(s)	361, 625
BcgI	CGANNNNNNTGC	2 cut(s)	198, 232
BciT130I	CCWGG	2 cut(s)	233, 659
BciVI	GTATCC	1 cut(s)	353
BclI	TGATCA	1 cut(s)	805
BcoDI	GTCTC	3 cut(s)	143, 385, 710
BfmI	CTRYAG	1 cut(s)	191
BfuI	GTATCC	1 cut(s)	353
BglII	AGATCT	1 cut(s)	650
BisI	GCNGC	5 cut(s)	44, 285, 349, 590, 593
BlsI	GCNGC	5 cut(s)	45, 286, 350, 591, 594
Bme1390I	CCNGG	2 cut(s)	233, 659
Bme18I	GGWCC	4 cut(s)	405, 661, 690, 929
BmeT110I	CYCGRG	1 cut(s)	646
BmgT120I	GGNCC	4 cut(s)	405, 661, 690, 929
BmiI	GGNNCC	2 cut(s)	85, 912
BmrFI	CCNGG	2 cut(s)	233, 659
BmsI	GCATC	3 cut(s)	215, 603, 801
BoxI	GACNNNNGTC	1 cut(s)	14
BpiI	GAAGAC	1 cut(s)	421
BplI	GAGNNNNNCTC	2 cut(s)	314, 346
BsaAI	YACGTR	1 cut(s)	278
BsaBI	GATNNNNATC	1 cut(s)	815
BsaHI	GRCGYC	1 cut(s)	669
BsaJI	CCNNGG	2 cut(s)	244, 664
BsaWI	WCCGGW	2 cut(s)	307, 931
Bsc4I	CCNNNNNNNGG	1 cut(s)	852
Bse1I	ACTGG	1 cut(s)	407
Bse21I	CCTNAGG	1 cut(s)	422
Bse3DI	GCAATG	2 cut(s)	552, 832
Bse8I	GATNNNNATC	1 cut(s)	815
BseBI	CCWGG	2 cut(s)	233, 659
BseDI	CCNNGG	2 cut(s)	244, 664
BseGI	GGATG	2 cut(s)	230, 727
BseJI	GATNNNNATC	1 cut(s)	815
BseLI	CCNNNNNNNGG	1 cut(s)	852
BseMI	GCAATG	2 cut(s)	552, 832
BseMII	CTCAG	1 cut(s)	226
BseNI	ACTGG	1 cut(s)	407
BseRI	GAGGAG	1 cut(s)	147
BseXI	GCAGC	4 cut(s)	55, 296, 579, 601
Bsh1285I	CGRYCG	1 cut(s)	936
BshFI	GGCC	4 cut(s)	5, 243, 463, 732
BsiEI	CGRYCG	1 cut(s)	936
BsiHKAI	GWGCWC	1 cut(s)	647
BsiHKCI	CYCGRG	1 cut(s)	646
BsiSI	CCGG	4 cut(s)	308, 693, 908, 932
BslFI	GGGAC	1 cut(s)	752
BslI	CCNNNNNNNGG	1 cut(s)	852
BsmAI	GTCTC	3 cut(s)	143, 385, 710
BsmFI	GGGAC	1 cut(s)	752
BsnI	GGCC	4 cut(s)	5, 243, 463, 732
BsoBI	CYCGRG	1 cut(s)	646
Bsp1286I	GDGCHC	2 cut(s)	647, 845
Bsp143I	GATC	8 cut(s)	83, 203, 439, 601, 650, 805, 816, 910
Bsp19I	CCATGG	1 cut(s)	244
BspACI	CCGC	3 cut(s)	348, 434, 638
BspANI	GGCC	4 cut(s)	5, 243, 463, 732
BspCNI	CTCAG	1 cut(s)	225
BspHI	TCATGA	2 cut(s)	184, 819
BspLI	GGNNCC	2 cut(s)	85, 912
BspPI	GGATC	4 cut(s)	78, 91, 905, 918
BspQI	GCTCTTC	1 cut(s)	569
BsrDI	GCAATG	2 cut(s)	552, 832
BsrI	ACTGG	1 cut(s)	407
BssECI	CCNNGG	2 cut(s)	244, 664
BssMI	GATC	8 cut(s)	83, 203, 439, 601, 650, 805, 816, 910
BssNI	GRCGYC	1 cut(s)	669
BssSI	CACGAG	1 cut(s)	943
BssT1I	CCWWGG	1 cut(s)	244
Bst2BI	CACGAG	1 cut(s)	943
Bst2UI	CCWGG	2 cut(s)	233, 659
Bst4CI	ACNGT	1 cut(s)	365
Bst6I	CTCTTC	4 cut(s)	146, 309, 564, 569
BstACI	GRCGYC	1 cut(s)	669
BstBAI	YACGTR	1 cut(s)	278
BstC8I	GCNNGC	1 cut(s)	618
BstDEI	CTNAG	3 cut(s)	200, 212, 422
BstDSI	CCRYGG	1 cut(s)	244
BstF5I	GGATG	2 cut(s)	230, 727
BstKTI	GATC	8 cut(s)	86, 206, 442, 604, 653, 808, 819, 913
BstMAI	GTCTC	3 cut(s)	143, 385, 710
BstMBI	GATC	8 cut(s)	83, 203, 439, 601, 650, 805, 816, 910
BstMCI	CGRYCG	1 cut(s)	936
BstNI	CCWGG	2 cut(s)	233, 659
BstNSI	RCATGY	1 cut(s)	705
BstPAI	GACNNNNGTC	1 cut(s)	14
BstSCI	CCNGG	2 cut(s)	231, 657
BstSFI	CTRYAG	1 cut(s)	191
BstV1I	GCAGC	4 cut(s)	55, 296, 579, 601
BstV2I	GAAGAC	1 cut(s)	421
BstX2I	RGATCY	3 cut(s)	83, 650, 910
BstYI	RGATCY	3 cut(s)	83, 650, 910
Bsu36I	CCTNAGG	1 cut(s)	422
BsuI	GTATCC	1 cut(s)	353
BsuRI	GGCC	4 cut(s)	5, 243, 463, 732
BtgI	CCRYGG	1 cut(s)	244
BtsCI	GGATG	2 cut(s)	230, 727
Cac8I	GCNNGC	1 cut(s)	618
CciI	TCATGA	2 cut(s)	184, 819
Cfr13I	GGNCC	4 cut(s)	405, 661, 690, 929
CseI	GACGC	2 cut(s)	290, 658
CsiI	ACCWGGT	1 cut(s)	657
Csp6I	GTAC	1 cut(s)	275
CviAII	CATG	9 cut(s)	7, 185, 245, 497, 702, 782, 820, 847, 877
CviQI	GTAC	1 cut(s)	275
DdeI	CTNAG	3 cut(s)	200, 212, 422
DpnI	GATC	8 cut(s)	85, 205, 441, 603, 652, 807, 818, 912
DpnII	GATC	8 cut(s)	83, 203, 439, 601, 650, 805, 816, 910
DraIII	CACNNNGTG	1 cut(s)	856
EaeI	YGGCCR	2 cut(s)	3, 461
Eam1104I	CTCTTC	4 cut(s)	146, 309, 564, 569
EarI	CTCTTC	4 cut(s)	146, 309, 564, 569
EciI	GGCGGA	1 cut(s)	627
Eco130I	CCWWGG	1 cut(s)	244
Eco147I	AGGCCT	1 cut(s)	732
Eco24I	GRGCYC	1 cut(s)	845
Eco32I	GATATC	1 cut(s)	133
Eco47I	GGWCC	4 cut(s)	405, 661, 690, 929
Eco81I	CCTNAGG	1 cut(s)	422
Eco88I	CYCGRG	1 cut(s)	646
EcoRII	CCWGG	2 cut(s)	231, 657
EcoRV	GATATC	1 cut(s)	133
EcoT14I	CCWWGG	1 cut(s)	244
EcoT38I	GRGCYC	1 cut(s)	845
ErhI	CCWWGG	1 cut(s)	244
FaeI	CATG	9 cut(s)	10, 188, 248, 500, 705, 785, 823, 850, 880
FaqI	GGGAC	1 cut(s)	752
FatI	CATG	9 cut(s)	6, 184, 244, 496, 701, 781, 819, 846, 876
FauI	CCCGC	1 cut(s)	441
FbaI	TGATCA	1 cut(s)	805
Fnu4HI	GCNGC	5 cut(s)	44, 285, 349, 590, 593
FokI	GGATG	2 cut(s)	237, 734
FriOI	GRGCYC	1 cut(s)	845
Fsp4HI	GCNGC	5 cut(s)	44, 285, 349, 590, 593
GluI	GCNGC	5 cut(s)	44, 285, 349, 590, 593
HaeIII	GGCC	4 cut(s)	5, 243, 463, 732
HapII	CCGG	4 cut(s)	308, 693, 908, 932
HgaI	GACGC	2 cut(s)	290, 658
Hin1I	GRCGYC	1 cut(s)	669
Hin1II	CATG	9 cut(s)	10, 188, 248, 500, 705, 785, 823, 850, 880
HindIII	AAGCTT	1 cut(s)	449
HinfI	GANTC	4 cut(s)	92, 257, 765, 941
HpaII	CCGG	4 cut(s)	308, 693, 908, 932
HphI	GGTGA	3 cut(s)	50, 815, 871
Hpy188I	TCNGA	5 cut(s)	169, 256, 385, 655, 810
Hpy188III	TCNNGA	8 cut(s)	185, 266, 333, 398, 648, 820, 914, 945
HpyAV	CCTTC	3 cut(s)	313, 722, 743
HpyCH4III	ACNGT	1 cut(s)	365
HpyCH4IV	ACGT	1 cut(s)	277
HpyCH4V	TGCA	7 cut(s)	302, 506, 584, 616, 712, 814, 850
HpyF3I	CTNAG	3 cut(s)	200, 212, 422
HpySE526I	ACGT	1 cut(s)	277
Hsp92I	GRCGYC	1 cut(s)	669
Hsp92II	CATG	9 cut(s)	10, 188, 248, 500, 705, 785, 823, 850, 880
Ksp22I	TGATCA	1 cut(s)	805
Kzo9I	GATC	8 cut(s)	83, 203, 439, 601, 650, 805, 816, 910
LguI	GCTCTTC	1 cut(s)	569
Lsp1109I	GCAGC	4 cut(s)	55, 296, 579, 601
LweI	GCATC	3 cut(s)	215, 603, 801
MabI	ACCWGGT	1 cut(s)	657
MaeII	ACGT	1 cut(s)	277
MaeIII	GTNAC	4 cut(s)	278, 492, 697, 859
MalI	GATC	8 cut(s)	85, 205, 441, 603, 652, 807, 818, 912
MboI	GATC	8 cut(s)	83, 203, 439, 601, 650, 805, 816, 910
MboII	GAAGA	7 cut(s)	87, 133, 326, 421, 523, 581, 586
MflI	RGATCY	3 cut(s)	83, 650, 910
MhlI	GDGCHC	2 cut(s)	647, 845
MlsI	TGGCCA	2 cut(s)	5, 463
MluCI	AATT	3 cut(s)	293, 468, 924
MluNI	TGGCCA	2 cut(s)	5, 463
MlyI	GAGTC	2 cut(s)	774, 935
MmeI	TCCRAC	1 cut(s)	408
MnlI	CCTC	7 cut(s)	168, 349, 674, 687, 789, 873, 931
Mox20I	TGGCCA	2 cut(s)	5, 463
MroXI	GAANNNNTTC	1 cut(s)	732
MscI	TGGCCA	2 cut(s)	5, 463
MseI	TTAA	3 cut(s)	66, 540, 795
MslI	CAYNNNNRTG	1 cut(s)	501
Msp20I	TGGCCA	2 cut(s)	5, 463
MspA1I	CMGCKG	1 cut(s)	592
MspI	CCGG	4 cut(s)	308, 693, 908, 932
MspR9I	CCNGG	2 cut(s)	233, 659
MvaI	CCWGG	2 cut(s)	233, 659
NcoI	CCATGG	1 cut(s)	244
NdeII	GATC	8 cut(s)	83, 203, 439, 601, 650, 805, 816, 910
NlaIII	CATG	9 cut(s)	10, 188, 248, 500, 705, 785, 823, 850, 880
NlaIV	GGNNCC	2 cut(s)	85, 912
NmeAIII	GCCGAG	2 cut(s)	197, 645
NmuCI	GTSAC	3 cut(s)	278, 697, 859
NspI	RCATGY	1 cut(s)	705
PaeR7I	CTCGAG	1 cut(s)	646
PagI	TCATGA	2 cut(s)	184, 819
PceI	AGGCCT	1 cut(s)	732
PciI	ACATGT	1 cut(s)	701
PciSI	GCTCTTC	1 cut(s)	569
PcsI	WCGNNNNNNNCGW	1 cut(s)	351
PdmI	GAANNNNTTC	1 cut(s)	732
PfeI	GAWTC	2 cut(s)	92, 257
PflFI	GACNNNGTC	1 cut(s)	659
PkrI	GCNGC	5 cut(s)	45, 286, 350, 591, 594
PleI	GAGTC	2 cut(s)	773, 935
PpsI	GAGTC	2 cut(s)	773, 935
Ppu21I	YACGTR	1 cut(s)	278
PscI	ACATGT	1 cut(s)	701
PshAI	GACNNNNGTC	1 cut(s)	14
Psp6I	CCWGG	2 cut(s)	231, 657
PspGI	CCWGG	2 cut(s)	231, 657
PspN4I	GGNNCC	2 cut(s)	85, 912
PspPI	GGNCC	4 cut(s)	405, 661, 690, 929
PsuI	RGATCY	3 cut(s)	83, 650, 910
PsyI	GACNNNGTC	1 cut(s)	659
PvuII	CAGCTG	1 cut(s)	592
RsaI	GTAC	1 cut(s)	276
RsaNI	GTAC	1 cut(s)	275
RseI	CAYNNNNRTG	1 cut(s)	501
SapI	GCTCTTC	1 cut(s)	569
SaqAI	TTAA	3 cut(s)	66, 540, 795
SatI	GCNGC	5 cut(s)	44, 285, 349, 590, 593
Sau3AI	GATC	8 cut(s)	83, 203, 439, 601, 650, 805, 816, 910
Sau96I	GGNCC	4 cut(s)	405, 661, 690, 929
SchI	GAGTC	2 cut(s)	774, 935
ScrFI	CCNGG	2 cut(s)	233, 659
SduI	GDGCHC	2 cut(s)	647, 845
SexAI	ACCWGGT	1 cut(s)	657
SfaNI	GCATC	3 cut(s)	215, 603, 801
SfcI	CTRYAG	1 cut(s)	191
Sfr274I	CTCGAG	1 cut(s)	646
SinI	GGWCC	4 cut(s)	405, 661, 690, 929
SlaI	CTCGAG	1 cut(s)	646
SmiMI	CAYNNNNRTG	1 cut(s)	501
SmlI	CTYRAG	1 cut(s)	646
SmoI	CTYRAG	1 cut(s)	646
Sse9I	AATT	3 cut(s)	293, 468, 924
SseBI	AGGCCT	1 cut(s)	732
SsiI	CCGC	3 cut(s)	348, 434, 638
SspI	AATATT	1 cut(s)	164
StuI	AGGCCT	1 cut(s)	732
StyD4I	CCNGG	2 cut(s)	231, 657
StyI	CCWWGG	1 cut(s)	244
TaaI	ACNGT	1 cut(s)	365
TaiI	ACGT	1 cut(s)	280
TaqI	TCGA	4 cut(s)	354, 399, 647, 936
TasI	AATT	3 cut(s)	293, 468, 924
TauI	GCSGC	1 cut(s)	351
TfiI	GAWTC	2 cut(s)	92, 257
Tru1I	TTAA	3 cut(s)	66, 540, 795
Tru9I	TTAA	3 cut(s)	66, 540, 795
TseFI	GTSAC	3 cut(s)	278, 697, 859
TseI	GCWGC	4 cut(s)	43, 284, 589, 592
Tsp45I	GTSAC	3 cut(s)	278, 697, 859
TspDTI	ATGAA	4 cut(s)	47, 129, 443, 513
TspGWI	ACGGA	2 cut(s)	698, 935
Tth111I	GACNNNGTC	1 cut(s)	659
VpaK11BI	GGWCC	4 cut(s)	405, 661, 690, 929
XapI	RAATTY	1 cut(s)	468
XceI	RCATGY	1 cut(s)	705
XcmI	CCANNNNNNNNNTGG	1 cut(s)	853
XhoI	CTCGAG	1 cut(s)	646
XmnI	GAANNNNTTC	1 cut(s)	732

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.