Rh2CG027400

Belongs to the iron ascorbate-dependent oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0002033
Physical Location & Seq
Forward (+)
2083533 .. 2084020
488 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG027400.1

Sequence Viewer

Length: 390 bp
ATGGCGAAATCGTTGAATTCGGAAGAGAACGACTTTTTTACTAAGCTGCTTGGAGAGGTAGCTCTGTTGCAAGCAAGATTCAACTTTTATTCCGCTGTGTTCAAAAGCCGATCAGGTTCTTGGTGTGACGGCACACATAGACAGGACAGAGAAGTAGAGGGTCTGCAAGTTTTGGTGGATGGTAAATGGGTTACAGTCCCCATTGTGCCACAGGGCATTGTTGTTAATCTTAGTGATCAAGTGCAGATTTTGATACTGTCTGACGTCATACTGCAGATTATGTGTAATGGCATATTCAAGGGCCCACTGCACAGGGTGATGAAGCTATCTGTGGCTTTGCTTAATCAGAACCAGATCCTGATACTGAGATTAGTCCAGTGGAGAAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N

Protein Analysis

129

Amino Acids

14.62

Weight (kDa)

8.71

Isoelectric Point (pI)

31.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
2OG-FeII_Oxy PF03171 48 - 107 9.5e-09 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 267
AciI CCGC 1 cut(s) 93
AclWI GGATC 1 cut(s) 349
AcsI RAATTY 1 cut(s) 16
AcyI GRCGYC 1 cut(s) 264
AdeI CACNNNGTG 1 cut(s) 316
AgsI TTSAA 4 cut(s) 16, 82, 103, 298
AluBI AGCT 3 cut(s) 46, 62, 325
AluI AGCT 3 cut(s) 46, 62, 325
AlwI GGATC 1 cut(s) 349
AlwNI CAGNNNCTG 1 cut(s) 358
AoxI GGCC 1 cut(s) 301
ApaI GGGCCC 1 cut(s) 305
ApeKI GCWGC 1 cut(s) 46
ApoI RAATTY 1 cut(s) 16
AspS9I GGNCC 2 cut(s) 301, 302
AsuHPI GGTGA 1 cut(s) 328
BaeGI GKGCMC 1 cut(s) 305
BanII GRGCYC 1 cut(s) 305
BbvI GCAGC 1 cut(s) 33
BccI CCATC 1 cut(s) 173
BceAI ACGGC 1 cut(s) 145
BclI TGATCA 1 cut(s) 235
BfmI CTRYAG 1 cut(s) 272
BisI GCNGC 1 cut(s) 47
BlsI GCNGC 1 cut(s) 48
BmgT120I GGNCC 2 cut(s) 301, 302
BmiI GGNNCC 1 cut(s) 303
BsaHI GRCGYC 1 cut(s) 264
Bse1I ACTGG 1 cut(s) 376
BseGI GGATG 1 cut(s) 184
BseMII CTCAG 1 cut(s) 356
BseNI ACTGG 1 cut(s) 376
BseSI GKGCMC 1 cut(s) 305
BseXI GCAGC 1 cut(s) 33
BsgI GTGCAG 2 cut(s) 263, 293
BshFI GGCC 1 cut(s) 303
BslFI GGGAC 1 cut(s) 182
BsmFI GGGAC 1 cut(s) 182
BsnI GGCC 1 cut(s) 303
Bsp120I GGGCCC 1 cut(s) 301
Bsp1286I GDGCHC 1 cut(s) 305
Bsp143I GATC 3 cut(s) 110, 235, 354
BspACI CCGC 1 cut(s) 93
BspANI GGCC 1 cut(s) 303
BspCNI CTCAG 1 cut(s) 357
BspLI GGNNCC 1 cut(s) 303
BspMAI CTGCAG 1 cut(s) 276
BspPI GGATC 1 cut(s) 349
BsrI ACTGG 1 cut(s) 376
BssMI GATC 3 cut(s) 110, 235, 354
BssNI GRCGYC 1 cut(s) 264
Bst4CI ACNGT 2 cut(s) 196, 258
Bst6I CTCTTC 1 cut(s) 18
BstACI GRCGYC 1 cut(s) 264
BstC8I GCNNGC 1 cut(s) 72
BstDEI CTNAG 3 cut(s) 42, 230, 365
BstF5I GGATG 1 cut(s) 184
BstKTI GATC 3 cut(s) 113, 238, 357
BstMBI GATC 3 cut(s) 110, 235, 354
BstSFI CTRYAG 1 cut(s) 272
BstSLI GKGCMC 1 cut(s) 305
BstV1I GCAGC 1 cut(s) 33
BstX2I RGATCY 1 cut(s) 354
BstYI RGATCY 1 cut(s) 354
BsuRI GGCC 1 cut(s) 303
BtsCI GGATG 1 cut(s) 184
BtsI GCAGTG 1 cut(s) 305
BtsIMutI CAGTG 2 cut(s) 305, 383
Cac8I GCNNGC 1 cut(s) 72
CaiI CAGNNNCTG 1 cut(s) 358
Cfr13I GGNCC 2 cut(s) 301, 302
CviJI RGCY 6 cut(s) 46, 62, 108, 303, 325, 335
CviKI_1 RGCY 6 cut(s) 46, 62, 108, 303, 325, 335
DdeI CTNAG 3 cut(s) 42, 230, 365
DpnI GATC 3 cut(s) 112, 237, 356
DpnII GATC 3 cut(s) 110, 235, 354
DraIII CACNNNGTG 1 cut(s) 316
Eam1104I CTCTTC 1 cut(s) 18
EarI CTCTTC 1 cut(s) 18
Eco24I GRGCYC 1 cut(s) 305
EcoO109I RGGNCCY 1 cut(s) 301
EcoRI GAATTC 1 cut(s) 16
EcoT38I GRGCYC 1 cut(s) 305
FaiI YATR 4 cut(s) 138, 269, 281, 293
FaqI GGGAC 1 cut(s) 182
FbaI TGATCA 1 cut(s) 235
Fnu4HI GCNGC 1 cut(s) 47
FokI GGATG 1 cut(s) 191
FriOI GRGCYC 1 cut(s) 305
Fsp4HI GCNGC 1 cut(s) 47
GluI GCNGC 1 cut(s) 47
HaeIII GGCC 1 cut(s) 303
Hin1I GRCGYC 1 cut(s) 264
HinfI GANTC 1 cut(s) 78
HphI GGTGA 1 cut(s) 328
Hpy188I TCNGA 3 cut(s) 22, 262, 348
Hpy188III TCNNGA 1 cut(s) 358
HpyCH4III ACNGT 2 cut(s) 196, 258
HpyCH4IV ACGT 1 cut(s) 264
HpyCH4V TGCA 5 cut(s) 70, 166, 244, 274, 310
HpyF3I CTNAG 3 cut(s) 42, 230, 365
HpySE526I ACGT 1 cut(s) 264
Hsp92I GRCGYC 1 cut(s) 264
Ksp22I TGATCA 1 cut(s) 235
Kzo9I GATC 3 cut(s) 110, 235, 354
LpnPI CCDG 6 cut(s) 99, 128, 197, 298, 365, 371
Lsp1109I GCAGC 1 cut(s) 33
MaeII ACGT 1 cut(s) 264
MaeIII GTNAC 2 cut(s) 125, 190
MalI GATC 3 cut(s) 112, 237, 356
MboI GATC 3 cut(s) 110, 235, 354
MboII GAAGA 1 cut(s) 35
MflI RGATCY 1 cut(s) 354
MhlI GDGCHC 1 cut(s) 305
MluCI AATT 1 cut(s) 16
MnlI CCTC 2 cut(s) 49, 151
MseI TTAA 2 cut(s) 225, 342
MspA1I CMGCKG 1 cut(s) 95
NdeII GATC 3 cut(s) 110, 235, 354
NlaIV GGNNCC 1 cut(s) 303
NmuCI GTSAC 1 cut(s) 125
PfeI GAWTC 1 cut(s) 78
PkrI GCNGC 1 cut(s) 48
PspN4I GGNNCC 1 cut(s) 303
PspOMI GGGCCC 1 cut(s) 301
PspPI GGNCC 2 cut(s) 301, 302
PstI CTGCAG 1 cut(s) 276
PstNI CAGNNNCTG 1 cut(s) 358
PsuI RGATCY 1 cut(s) 354
SaqAI TTAA 2 cut(s) 225, 342
SatI GCNGC 1 cut(s) 47
Sau3AI GATC 3 cut(s) 110, 235, 354
Sau96I GGNCC 2 cut(s) 301, 302
SduI GDGCHC 1 cut(s) 305
SetI ASST 6 cut(s) 48, 60, 64, 118, 267, 327
SfcI CTRYAG 1 cut(s) 272
Sse9I AATT 1 cut(s) 16
SsiI CCGC 1 cut(s) 93
TaaI ACNGT 2 cut(s) 196, 258
TaiI ACGT 1 cut(s) 267
TasI AATT 1 cut(s) 16
TfiI GAWTC 1 cut(s) 78
Tru1I TTAA 2 cut(s) 225, 342
Tru9I TTAA 2 cut(s) 225, 342
TscAI CASTG 2 cut(s) 312, 383
TseFI GTSAC 1 cut(s) 125
TseI GCWGC 1 cut(s) 46
Tsp45I GTSAC 1 cut(s) 125
TspDTI ATGAA 1 cut(s) 335
TspRI CASTG 2 cut(s) 312, 383
XapI RAATTY 1 cut(s) 16
ZraI GACGTC 1 cut(s) 265
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.