Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0002033

Physical Location & Seq

Genomic Coordinates Forward (+)

1135390 .. 1137797

Gene Structure 2408 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g02120.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1020 bp

ATGTCCATCAAAGGTGATGAACTACCACCTGAATATATTGTCACAGAAAGCAAGTTTGGAGCCATAGAGTCCTCACCAGAATTGGGTCAAATCCCCACCATTGATGTTAGTCTCTTCTCCCAATCATCAATTGGCACTAAGGAAGCAGAGATCGAACTAAAGAAACTCAGATCAGCTCTTAGCTCATCCGCCTGCTTCCAGGCAATCGGTCATGGGATTTCAAGTTCCTTTCTGGACAAGGTACGCGAAGTTGCAACACAATTCTTTGAACTTCCAGTGGAAGAGAAGCAAAACTACTCGAGAGAAATTTATGGTGGCGAAGAAGGATATGGGGAGGATGTAATTGTCTCAGAGAAGCAAGTTCTTGATTGGTCTTACCGCCTAATTCTTCAAGTATTCCCTGAAGATCAAAGAAGGCTTGATCTCTGGCCAGAAAATCCAACTGATTTTCGAGAGGTTCTGCATGAATATGCAACACAGGTAAAGTTCATTATGCATGTTCTGTTCAAGGCCATGGAAAAATCTCTGAATTTAGAAGAGAACATCATTTTAGATAAGCTGCTTGGAGAAAAAGCTCAGATGAGAGCAAAATTCAACTTCTATCCGCGGTGTCCAAGAGCCGATAAGGTGTTTGGTTTGAAGCCTCATACAGATGGGTCAGGAATGACTGTTCTGTTGCAGGACAAAGAGGTAGAAGGTCTTCAAGTTTTGGTTGATGGAAAATGGGTTAGAGTCCCCATTGTGCCTCATGCAATAGTTGTTAATCTTGGTGATCAAATGCAGATTATGAGTAATGGTATCTTCAAGAGCCCAATGCACAGGGTTGTGACAAATCCAGACAGAATGAGACTATCTGTGGCCTTGTTTAATGAACCTGATCCTGAAACTGAGATTAATCCTGTGGAGAAATTGATAGATGAGACAAGGCCAAGGTTATACAAAAATGTCAAGAATTATGGTCGTATCAACTATGAATGCTATCAGAAAGGAGAAGTTGCACTTGAAACATTGAAGATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

340

Amino Acids

38.7

Weight (kDa)

5.24

Isoelectric Point (pI)

42.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	31 - 146	2e-20	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	198 - 292	2.5e-31	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002033)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g02111 FvH4_1g02112 FvH4_1g02120
malus_domestica	MD02G1019300.v1.1 MD02G1019600.v1.1
prunus_persica	Prupe.7G251800_v2.0.a1 Prupe.7G251800_v2.0.a1
pyrus_communis	pycom02g01720 pycom02g01730 pycom02g01740
rosa_chinensis	RchiOBHm_Chr2g0087171 RchiOBHm_Chr2g0087181 RchiOBHm_Chr2g0087191 RchiOBHm_Chr2g0087251 RchiOBHm_Chr6g0295511
rosa_laevigata	RLG00000011795 RLG00000015839 RLG00000015840 RLG00000015841 RLG00000015843 RLG00000015847
rosa_multiflora	Rmu_co8200202.1_g000001 Rmu_sc0003367.1_g000007 Rmu_sc0009355.1_g000005 Rmu_sc0009802.1_g000001 Rmu_sc0011562.1_g000001 Rmu_sc0018794.1_g000006 Rmu_ssc0000239.1_g000011
rosa_roxburghii	Rroxscaffold_2G00153820 Rroxscaffold_7G00172410
rosa_rugosa	Rorug01G0473200 Rorug01G0473600 Rorug06G0251600
rosa_samantha	Rh2AG026300 Rh2AG026500 Rh2AG027000 Rh2CG026800 Rh2CG026900 Rh2CG027000 Rh2CG027400 Rh2DG026600 Rh6BG373100 Rh6CG379300 Rh6DG365800
rosa_wichuraiana	Rw2G002110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	246, 607
AciI	CCGC	4 cut(s)	189, 379, 605, 607
AclWI	GGATC	1 cut(s)	872
AcoI	YGGCCR	1 cut(s)	428
AcsI	RAATTY	3 cut(s)	306, 529, 590
AcuI	CTGAAG	1 cut(s)	423
AfaI	GTAC	1 cut(s)	243
AfiI	CCNNNNNNNGG	1 cut(s)	83
AjnI	CCWGG	1 cut(s)	198
AjuI	GAANNNNNNNTTGG	2 cut(s)	39, 71
AloI	GAACNNNNNNTCC	4 cut(s)	208, 240, 654, 686
AluBI	AGCT	4 cut(s)	176, 183, 559, 575
AluI	AGCT	4 cut(s)	176, 183, 559, 575
Alw26I	GTCTC	4 cut(s)	116, 352, 841, 914
AlwI	GGATC	1 cut(s)	872
Ama87I	CYCGRG	1 cut(s)	298
AoxI	GGCC	4 cut(s)	428, 510, 858, 926
ApeKI	GCWGC	1 cut(s)	559
ApoI	RAATTY	3 cut(s)	306, 529, 590
AseI	ATTAAT	1 cut(s)	894
Asp700I	GAANNNNTTC	1 cut(s)	699
AsuHPI	GGTGA	3 cut(s)	26, 66, 782
AvaI	CYCGRG	1 cut(s)	298
BalI	TGGCCA	1 cut(s)	430
BanII	GRGCYC	1 cut(s)	812
BarI	GAAGNNNNNNTAC	4 cut(s)	278, 310, 684, 716
BbsI	GAAGAC	1 cut(s)	692
BbvI	GCAGC	1 cut(s)	546
BccI	CCATC	3 cut(s)	14, 647, 710
BciT130I	CCWGG	1 cut(s)	200
BclI	TGATCA	1 cut(s)	772
BcoDI	GTCTC	4 cut(s)	116, 352, 841, 914
BglII	AGATCT	1 cut(s)	1014
BisI	GCNGC	1 cut(s)	560
BlsI	GCNGC	1 cut(s)	561
Bme1390I	CCNGG	1 cut(s)	200
BmeT110I	CYCGRG	1 cut(s)	298
BmiI	GGNNCC	1 cut(s)	61
BmrFI	CCNGG	1 cut(s)	200
BpiI	GAAGAC	1 cut(s)	692
BsaJI	CCNNGG	3 cut(s)	513, 605, 929
Bsc4I	CCNNNNNNNGG	1 cut(s)	83
Bse1I	ACTGG	1 cut(s)	275
BseBI	CCWGG	1 cut(s)	200
BseDI	CCNNGG	3 cut(s)	513, 605, 929
BseGI	GGATG	2 cut(s)	185, 343
BseLI	CCNNNNNNNGG	1 cut(s)	83
BseMII	CTCAG	4 cut(s)	181, 363, 590, 879
BseNI	ACTGG	1 cut(s)	275
BseXI	GCAGC	1 cut(s)	546
Bsh1236I	CGCG	2 cut(s)	246, 607
BshFI	GGCC	4 cut(s)	430, 512, 860, 928
BsiHKCI	CYCGRG	1 cut(s)	298
BslFI	GGGAC	1 cut(s)	719
BslI	CCNNNNNNNGG	1 cut(s)	83
BsmAI	GTCTC	4 cut(s)	116, 352, 841, 914
BsmFI	GGGAC	1 cut(s)	719
BsmI	GAATGC	1 cut(s)	980
BsnI	GGCC	4 cut(s)	430, 512, 860, 928
BsoBI	CYCGRG	1 cut(s)	298
Bsp1286I	GDGCHC	1 cut(s)	812
Bsp143I	GATC	7 cut(s)	150, 170, 406, 421, 772, 877, 1014
Bsp19I	CCATGG	1 cut(s)	513
BspACI	CCGC	4 cut(s)	189, 379, 605, 607
BspANI	GGCC	4 cut(s)	430, 512, 860, 928
BspCNI	CTCAG	4 cut(s)	180, 362, 589, 880
BspFNI	CGCG	2 cut(s)	246, 607
BspLI	GGNNCC	1 cut(s)	61
BspPI	GGATC	1 cut(s)	872
BsrI	ACTGG	1 cut(s)	275
BssECI	CCNNGG	3 cut(s)	513, 605, 929
BssMI	GATC	7 cut(s)	150, 170, 406, 421, 772, 877, 1014
BssT1I	CCWWGG	2 cut(s)	513, 929
Bst2UI	CCWGG	1 cut(s)	200
Bst4CI	ACNGT	1 cut(s)	670
Bst6I	CTCTTC	3 cut(s)	119, 276, 531
BstC8I	GCNNGC	1 cut(s)	193
BstDEI	CTNAG	6 cut(s)	138, 167, 179, 349, 576, 888
BstDSI	CCRYGG	2 cut(s)	513, 605
BstF5I	GGATG	2 cut(s)	185, 343
BstFNI	CGCG	2 cut(s)	246, 607
BstKTI	GATC	7 cut(s)	153, 173, 409, 424, 775, 880, 1017
BstMAI	GTCTC	4 cut(s)	116, 352, 841, 914
BstMBI	GATC	7 cut(s)	150, 170, 406, 421, 772, 877, 1014
BstNI	CCWGG	1 cut(s)	200
BstNSI	RCATGY	1 cut(s)	500
BstSCI	CCNGG	1 cut(s)	198
BstUI	CGCG	2 cut(s)	246, 607
BstV1I	GCAGC	1 cut(s)	546
BstV2I	GAAGAC	1 cut(s)	692
BstX2I	RGATCY	1 cut(s)	1014
BstYI	RGATCY	1 cut(s)	1014
BsuRI	GGCC	4 cut(s)	430, 512, 860, 928
BtgI	CCRYGG	2 cut(s)	513, 605
BtsCI	GGATG	2 cut(s)	185, 343
BtsIMutI	CAGTG	1 cut(s)	282
Cac8I	GCNNGC	1 cut(s)	193
Cfr42I	CCGCGG	1 cut(s)	608
Csp6I	GTAC	1 cut(s)	242
CviAII	CATG	5 cut(s)	212, 464, 497, 514, 749
CviQI	GTAC	1 cut(s)	242
DdeI	CTNAG	6 cut(s)	138, 167, 179, 349, 576, 888
DpnI	GATC	7 cut(s)	152, 172, 408, 423, 774, 879, 1016
DpnII	GATC	7 cut(s)	150, 170, 406, 421, 772, 877, 1014
EaeI	YGGCCR	1 cut(s)	428
Eam1104I	CTCTTC	3 cut(s)	119, 276, 531
EarI	CTCTTC	3 cut(s)	119, 276, 531
EciI	GGCGGA	1 cut(s)	178
Eco130I	CCWWGG	2 cut(s)	513, 929
Eco24I	GRGCYC	1 cut(s)	812
Eco57I	CTGAAG	1 cut(s)	423
Eco88I	CYCGRG	1 cut(s)	298
EcoRII	CCWGG	1 cut(s)	198
EcoT14I	CCWWGG	2 cut(s)	513, 929
EcoT22I	ATGCAT	1 cut(s)	498
EcoT38I	GRGCYC	1 cut(s)	812
ErhI	CCWWGG	2 cut(s)	513, 929
FaeI	CATG	5 cut(s)	215, 467, 500, 517, 752
FalI	AAGNNNNNCTT	2 cut(s)	984, 1016
FaqI	GGGAC	1 cut(s)	719
FatI	CATG	5 cut(s)	211, 463, 496, 513, 748
FbaI	TGATCA	1 cut(s)	772
Fnu4HI	GCNGC	1 cut(s)	560
FokI	GGATG	2 cut(s)	172, 350
FriOI	GRGCYC	1 cut(s)	812
Fsp4HI	GCNGC	1 cut(s)	560
GluI	GCNGC	1 cut(s)	560
HaeIII	GGCC	4 cut(s)	430, 512, 860, 928
Hin1II	CATG	5 cut(s)	215, 467, 500, 517, 752
HinfI	GANTC	2 cut(s)	68, 732
HphI	GGTGA	3 cut(s)	26, 66, 782
Hpy188I	TCNGA	6 cut(s)	170, 352, 528, 579, 984, 1019
Hpy188III	TCNNGA	9 cut(s)	233, 300, 365, 452, 660, 805, 836, 881, 949
HpyAV	CCTTC	3 cut(s)	317, 408, 689
HpyCH4III	ACNGT	1 cut(s)	670
HpyCH4V	TGCA	9 cut(s)	254, 463, 473, 496, 679, 752, 781, 817, 998
HpyF3I	CTNAG	6 cut(s)	138, 167, 179, 349, 576, 888
Hsp92II	CATG	5 cut(s)	215, 467, 500, 517, 752
Ksp22I	TGATCA	1 cut(s)	772
KspI	CCGCGG	1 cut(s)	608
Kzo9I	GATC	7 cut(s)	150, 170, 406, 421, 772, 877, 1014
LmnI	GCTCC	1 cut(s)	59
Lsp1109I	GCAGC	1 cut(s)	546
MaeIII	GTNAC	2 cut(s)	40, 826
MalI	GATC	7 cut(s)	152, 172, 408, 423, 774, 879, 1016
MboI	GATC	7 cut(s)	150, 170, 406, 421, 772, 877, 1014
MboII	GAAGA	8 cut(s)	106, 293, 332, 380, 416, 548, 692, 793
MfeI	CAATTG	1 cut(s)	129
MflI	RGATCY	1 cut(s)	1014
MhlI	GDGCHC	1 cut(s)	812
MlsI	TGGCCA	1 cut(s)	430
MluNI	TGGCCA	1 cut(s)	430
MlyI	GAGTC	2 cut(s)	77, 741
MmeI	TCCRAC	1 cut(s)	464
MnlI	CCTC	6 cut(s)	82, 328, 448, 654, 682, 756
Mox20I	TGGCCA	1 cut(s)	430
Mph1103I	ATGCAT	1 cut(s)	498
MroXI	GAANNNNTTC	1 cut(s)	699
MscI	TGGCCA	1 cut(s)	430
MseI	TTAA	3 cut(s)	762, 867, 894
MslI	CAYNNNNRTG	2 cut(s)	468, 651
Msp20I	TGGCCA	1 cut(s)	430
MspA1I	CMGCKG	1 cut(s)	607
MspR9I	CCNGG	1 cut(s)	200
MunI	CAATTG	1 cut(s)	129
Mva1269I	GAATGC	1 cut(s)	980
MvaI	CCWGG	1 cut(s)	200
MvnI	CGCG	2 cut(s)	246, 607
NcoI	CCATGG	1 cut(s)	513
NdeII	GATC	7 cut(s)	150, 170, 406, 421, 772, 877, 1014
NlaIII	CATG	5 cut(s)	215, 467, 500, 517, 752
NlaIV	GGNNCC	1 cut(s)	61
NmuCI	GTSAC	2 cut(s)	40, 826
NsiI	ATGCAT	1 cut(s)	498
NspI	RCATGY	1 cut(s)	500
PaeR7I	CTCGAG	1 cut(s)	298
PctI	GAATGC	1 cut(s)	980
PdmI	GAANNNNTTC	1 cut(s)	699
PkrI	GCNGC	1 cut(s)	561
PleI	GAGTC	2 cut(s)	76, 740
PpsI	GAGTC	2 cut(s)	76, 740
PshBI	ATTAAT	1 cut(s)	894
Psp6I	CCWGG	1 cut(s)	198
PspGI	CCWGG	1 cut(s)	198
PspN4I	GGNNCC	1 cut(s)	61
PsuI	RGATCY	1 cut(s)	1014
RsaI	GTAC	1 cut(s)	243
RsaNI	GTAC	1 cut(s)	242
RseI	CAYNNNNRTG	2 cut(s)	468, 651
SacII	CCGCGG	1 cut(s)	608
SaqAI	TTAA	3 cut(s)	762, 867, 894
SatI	GCNGC	1 cut(s)	560
Sau3AI	GATC	7 cut(s)	150, 170, 406, 421, 772, 877, 1014
SchI	GAGTC	2 cut(s)	77, 741
ScrFI	CCNGG	1 cut(s)	200
SduI	GDGCHC	1 cut(s)	812
Sfr274I	CTCGAG	1 cut(s)	298
Sfr303I	CCGCGG	1 cut(s)	608
SgrBI	CCGCGG	1 cut(s)	608
SlaI	CTCGAG	1 cut(s)	298
SmiMI	CAYNNNNRTG	2 cut(s)	468, 651
SmlI	CTYRAG	1 cut(s)	298
SmoI	CTYRAG	1 cut(s)	298
SsiI	CCGC	4 cut(s)	189, 379, 605, 607
StyD4I	CCNGG	1 cut(s)	198
StyI	CCWWGG	2 cut(s)	513, 929
TaaI	ACNGT	1 cut(s)	670
TaqI	TCGA	3 cut(s)	153, 299, 451
TaqII	GACCGA	1 cut(s)	197
Tru1I	TTAA	3 cut(s)	762, 867, 894
Tru9I	TTAA	3 cut(s)	762, 867, 894
TscAI	CASTG	1 cut(s)	282
TseFI	GTSAC	2 cut(s)	40, 826
TseI	GCWGC	1 cut(s)	559
Tsp45I	GTSAC	2 cut(s)	40, 826
TspDTI	ATGAA	5 cut(s)	33, 478, 480, 885, 987
TspRI	CASTG	1 cut(s)	282
VspI	ATTAAT	1 cut(s)	894
XapI	RAATTY	3 cut(s)	306, 529, 590
XceI	RCATGY	1 cut(s)	500
XcmI	CCANNNNNNNNNTGG	1 cut(s)	128
XhoI	CTCGAG	1 cut(s)	298
XmnI	GAANNNNTTC	1 cut(s)	699
Zsp2I	ATGCAT	1 cut(s)	498

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.