Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0002033

Physical Location & Seq

Genomic Coordinates Forward (+)

1805745 .. 1807050

Gene Structure 1306 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000015840

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

ATGTCCATCAATGGTGATGAACCACTCCCTGAGTATATTGTTAAACAAGGCATCTTTGGAGCTATAGATTCTTCCCCATCACTAGGTCAGATCCCCATCTTTGATATCAATTTCTTCTCCTCAACATCACTCAATTCTAAGCAAGCGAAGAACGAACTTGAGAAACTTAGATCAGCACTAAGCTCATCAGGCTGCTTCCAGGCAGTTGGTCATGGGATTTCAAGTTCCTTTCTTGACAAGGTACGCGAAGCTGGAACACTGTTCTTTGCACTTCCAGTGGACGAGAAGCGAAAGTACTTAGAGGCAGCTCATGTTGATGGGAATGATGTCAAAGTCACAGAGAAGCAAGTTCTTGACTGGTGCTACCGTCTAACTCTTCGAGTATTCCCAGAAGATAAAAGAAGCCTTAATCTTTGGCCAGAAAATCCAAACAACTTTAGAGAGGTGCTAGATGAATATGCAACAAAGATAAAGTTAATGACGGATGTTCTCTTTAAGGCCATGGCCAAATCTTTGGATTTGGAAGAGAACAGCTTTGCAAACCAGCTGTTTGGAGAGCAAGCTCTGATGACAGCACAATTCAACTTCTATCCGCGGTGTTCAAGAGCCGATCAGGTGTATGGTGTGAAGCCACATACAGATGGGTCAGGAATAACAGTACTATTGCAAGACAGAGAAGTGGAAGGTCTTCAAGTTTTGGTAGATGATAATTGGGTCAGAGTACCAGTAGTTCCTCATGCACTAGTTGTTAATCTCGGGGATCAGATGCAGGTTATGAGTAATGGAATATTCAAGAGTGCAATGCACAGGGTGGTGACTAATACAGAAAAGTTGAGACTATCTGTAGCCATGTTTAACTCACCAGATCCTGAAACTGAGATTGGTCCACTGGAGAGCTTGATACATCATGAAACAAGGCCAAGGTTGTACAAAAATGTCAAGAATTTTGGTCGCATCAACTACGAATGCTATCAGAGAGGAGAAATAGCACTTGAAACAGTAAAGATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

337

Amino Acids

37.96

Weight (kDa)

5.61

Isoelectric Point (pI)

34.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	31 - 142	6.8e-19	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	194 - 287	5.3e-30	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002033)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g02111 FvH4_1g02112 FvH4_1g02120
malus_domestica	MD02G1019300.v1.1 MD02G1019600.v1.1
prunus_persica	Prupe.7G251800_v2.0.a1 Prupe.7G251800_v2.0.a1
pyrus_communis	pycom02g01720 pycom02g01730 pycom02g01740
rosa_chinensis	RchiOBHm_Chr2g0087171 RchiOBHm_Chr2g0087181 RchiOBHm_Chr2g0087191 RchiOBHm_Chr2g0087251 RchiOBHm_Chr6g0295511
rosa_laevigata	RLG00000011795 RLG00000015839 RLG00000015840 RLG00000015841 RLG00000015843 RLG00000015847
rosa_multiflora	Rmu_co8200202.1_g000001 Rmu_sc0003367.1_g000007 Rmu_sc0009355.1_g000005 Rmu_sc0009802.1_g000001 Rmu_sc0011562.1_g000001 Rmu_sc0018794.1_g000006 Rmu_ssc0000239.1_g000011
rosa_roxburghii	Rroxscaffold_2G00153820 Rroxscaffold_7G00172410
rosa_rugosa	Rorug01G0473200 Rorug01G0473600 Rorug06G0251600
rosa_samantha	Rh2AG026300 Rh2AG026500 Rh2AG027000 Rh2CG026800 Rh2CG026900 Rh2CG027000 Rh2CG027400 Rh2DG026600 Rh6BG373100 Rh6CG379300 Rh6DG365800
rosa_wichuraiana	Rw2G002110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	760
AccII	CGCG	2 cut(s)	246, 595
AciI	CCGC	2 cut(s)	593, 595
AclWI	GGATC	3 cut(s)	85, 768, 860
AcoI	YGGCCR	2 cut(s)	416, 504
AcsI	RAATTY	1 cut(s)	943
AdeI	CACNNNGTG	1 cut(s)	811
AfaI	GTAC	5 cut(s)	243, 296, 660, 723, 929
AfiI	CCNNNNNNNGG	1 cut(s)	83
AgsI	TTSAA	6 cut(s)	222, 583, 603, 692, 793, 995
AhlI	ACTAGT	1 cut(s)	742
AjnI	CCWGG	1 cut(s)	198
AjuI	GAANNNNNNNTTGG	2 cut(s)	864, 896
AloI	GAACNNNNNNTCC	2 cut(s)	208, 240
AluBI	AGCT	8 cut(s)	62, 183, 251, 308, 534, 547, 563, 897
AluI	AGCT	8 cut(s)	62, 183, 251, 308, 534, 547, 563, 897
Alw26I	GTCTC	1 cut(s)	829
AlwI	GGATC	3 cut(s)	85, 768, 860
AlwNI	CAGNNNCTG	1 cut(s)	869
Ama87I	CYCGRG	1 cut(s)	755
AoxI	GGCC	4 cut(s)	416, 498, 504, 917
ApeKI	GCWGC	2 cut(s)	192, 305
ApoI	RAATTY	1 cut(s)	943
Asp700I	GAANNNNTTC	1 cut(s)	687
AspS9I	GGNCC	1 cut(s)	884
AsuHPI	GGTGA	3 cut(s)	26, 826, 852
AvaI	CYCGRG	1 cut(s)	755
AvaII	GGWCC	1 cut(s)	884
BalI	TGGCCA	2 cut(s)	418, 506
BarI	GAAGNNNNNNTAC	2 cut(s)	278, 310
BbsI	GAAGAC	1 cut(s)	680
BbvI	GCAGC	2 cut(s)	179, 317
BccI	CCATC	5 cut(s)	14, 85, 104, 311, 635
BciT130I	CCWGG	1 cut(s)	200
BcoDI	GTCTC	1 cut(s)	829
BcuI	ACTAGT	1 cut(s)	742
BfaI	CTAG	3 cut(s)	83, 449, 743
BfmI	CTRYAG	2 cut(s)	63, 843
BfuAI	ACCTGC	1 cut(s)	760
BisI	GCNGC	2 cut(s)	193, 306
BlsI	GCNGC	2 cut(s)	194, 307
BmcAI	AGTACT	2 cut(s)	296, 660
Bme1390I	CCNGG	1 cut(s)	200
Bme18I	GGWCC	1 cut(s)	884
BmeT110I	CYCGRG	1 cut(s)	755
BmgT120I	GGNCC	1 cut(s)	884
BmrFI	CCNGG	1 cut(s)	200
BmsI	GCATC	3 cut(s)	60, 756, 963
BpiI	GAAGAC	1 cut(s)	680
BpmI	CTGGAG	1 cut(s)	911
BpuEI	CTTGAG	1 cut(s)	179
BsaBI	GATNNNNATC	1 cut(s)	95
BsaJI	CCNNGG	3 cut(s)	501, 593, 920
Bsc4I	CCNNNNNNNGG	1 cut(s)	83
Bse1I	ACTGG	4 cut(s)	275, 362, 725, 894
Bse3DI	GCAATG	1 cut(s)	807
Bse8I	GATNNNNATC	1 cut(s)	95
BseBI	CCWGG	1 cut(s)	200
BseDI	CCNNGG	3 cut(s)	501, 593, 920
BseGI	GGATG	1 cut(s)	490
BseJI	GATNNNNATC	1 cut(s)	95
BseLI	CCNNNNNNNGG	1 cut(s)	83
BseMI	GCAATG	1 cut(s)	807
BseMII	CTCAG	2 cut(s)	21, 867
BseNI	ACTGG	4 cut(s)	275, 362, 725, 894
BseRI	GAGGAG	2 cut(s)	109, 993
BseXI	GCAGC	2 cut(s)	179, 317
Bsh1236I	CGCG	2 cut(s)	246, 595
BshFI	GGCC	4 cut(s)	418, 500, 506, 919
BsiHKCI	CYCGRG	1 cut(s)	755
BslI	CCNNNNNNNGG	1 cut(s)	83
BsmAI	GTCTC	1 cut(s)	829
BsmI	GAATGC	1 cut(s)	971
BsnI	GGCC	4 cut(s)	418, 500, 506, 919
BsoBI	CYCGRG	1 cut(s)	755
Bsp1407I	TGTACA	1 cut(s)	927
Bsp143I	GATC	5 cut(s)	90, 170, 610, 760, 865
Bsp19I	CCATGG	1 cut(s)	501
BspACI	CCGC	2 cut(s)	593, 595
BspANI	GGCC	4 cut(s)	418, 500, 506, 919
BspCNI	CTCAG	2 cut(s)	22, 868
BspFNI	CGCG	2 cut(s)	246, 595
BspHI	TCATGA	1 cut(s)	907
BspMI	ACCTGC	1 cut(s)	760
BspPI	GGATC	3 cut(s)	85, 768, 860
BsrDI	GCAATG	1 cut(s)	807
BsrGI	TGTACA	1 cut(s)	927
BsrI	ACTGG	4 cut(s)	275, 362, 725, 894
BssECI	CCNNGG	3 cut(s)	501, 593, 920
BssMI	GATC	5 cut(s)	90, 170, 610, 760, 865
BssT1I	CCWWGG	2 cut(s)	501, 920
Bst2UI	CCWGG	1 cut(s)	200
Bst4CI	ACNGT	4 cut(s)	261, 368, 658, 1000
Bst6I	CTCTTC	2 cut(s)	381, 519
BstAUI	TGTACA	1 cut(s)	927
BstC8I	GCNNGC	2 cut(s)	144, 561
BstDEI	CTNAG	6 cut(s)	30, 138, 167, 179, 298, 876
BstDSI	CCRYGG	2 cut(s)	501, 593
BstF5I	GGATG	1 cut(s)	490
BstFNI	CGCG	2 cut(s)	246, 595
BstKTI	GATC	5 cut(s)	93, 173, 613, 763, 868
BstMAI	GTCTC	1 cut(s)	829
BstMBI	GATC	5 cut(s)	90, 170, 610, 760, 865
BstMWI	GCNNNNNNNGC	1 cut(s)	189
BstNI	CCWGG	1 cut(s)	200
BstSCI	CCNGG	1 cut(s)	198
BstSFI	CTRYAG	2 cut(s)	63, 843
BstUI	CGCG	2 cut(s)	246, 595
BstV1I	GCAGC	2 cut(s)	179, 317
BstV2I	GAAGAC	1 cut(s)	680
BstX2I	RGATCY	2 cut(s)	90, 865
BstXI	CCANNNNNNTGG	3 cut(s)	206, 514, 551
BstYI	RGATCY	2 cut(s)	90, 865
BsuRI	GGCC	4 cut(s)	418, 500, 506, 919
BtgI	CCRYGG	2 cut(s)	501, 593
BtsCI	GGATG	1 cut(s)	490
BtsIMutI	CAGTG	3 cut(s)	257, 282, 887
BveI	ACCTGC	1 cut(s)	760
Cac8I	GCNNGC	2 cut(s)	144, 561
CaiI	CAGNNNCTG	1 cut(s)	869
CciI	TCATGA	1 cut(s)	907
Cfr13I	GGNCC	1 cut(s)	884
Cfr42I	CCGCGG	1 cut(s)	596
Csp6I	GTAC	5 cut(s)	242, 295, 659, 722, 928
CviAII	CATG	6 cut(s)	212, 311, 502, 737, 850, 908
CviQI	GTAC	5 cut(s)	242, 295, 659, 722, 928
DdeI	CTNAG	6 cut(s)	30, 138, 167, 179, 298, 876
DpnI	GATC	5 cut(s)	92, 172, 612, 762, 867
DpnII	GATC	5 cut(s)	90, 170, 610, 760, 865
DraIII	CACNNNGTG	1 cut(s)	811
EaeI	YGGCCR	2 cut(s)	416, 504
Eam1104I	CTCTTC	2 cut(s)	381, 519
EarI	CTCTTC	2 cut(s)	381, 519
Eco130I	CCWWGG	2 cut(s)	501, 920
Eco32I	GATATC	1 cut(s)	106
Eco47I	GGWCC	1 cut(s)	884
Eco88I	CYCGRG	1 cut(s)	755
EcoRII	CCWGG	1 cut(s)	198
EcoRV	GATATC	1 cut(s)	106
EcoT14I	CCWWGG	2 cut(s)	501, 920
ErhI	CCWWGG	2 cut(s)	501, 920
FaeI	CATG	6 cut(s)	215, 314, 505, 740, 853, 911
FatI	CATG	6 cut(s)	211, 310, 501, 736, 849, 907
Fnu4HI	GCNGC	2 cut(s)	193, 306
FokI	GGATG	1 cut(s)	497
Fsp4HI	GCNGC	2 cut(s)	193, 306
FspBI	CTAG	3 cut(s)	83, 449, 743
GluI	GCNGC	2 cut(s)	193, 306
GsuI	CTGGAG	1 cut(s)	911
HaeIII	GGCC	4 cut(s)	418, 500, 506, 919
Hin1II	CATG	6 cut(s)	215, 314, 505, 740, 853, 911
HinfI	GANTC	1 cut(s)	68
HphI	GGTGA	3 cut(s)	26, 826, 852
Hpy166II	GTNNAC	2 cut(s)	280, 887
Hpy188I	TCNGA	5 cut(s)	90, 567, 719, 765, 975
Hpy188III	TCNNGA	8 cut(s)	233, 353, 603, 648, 793, 869, 908, 940
Hpy8I	GTNNAC	2 cut(s)	280, 887
HpyAV	CCTTC	1 cut(s)	677
HpyCH4III	ACNGT	4 cut(s)	261, 368, 658, 1000
HpyCH4V	TGCA	8 cut(s)	269, 461, 539, 667, 740, 769, 800, 805
HpyF10VI	GCNNNNNNNGC	1 cut(s)	189
HpyF3I	CTNAG	6 cut(s)	30, 138, 167, 179, 298, 876
Hsp92II	CATG	6 cut(s)	215, 314, 505, 740, 853, 911
KspI	CCGCGG	1 cut(s)	596
Kzo9I	GATC	5 cut(s)	90, 170, 610, 760, 865
LmnI	GCTCC	1 cut(s)	59
Lsp1109I	GCAGC	2 cut(s)	179, 317
LweI	GCATC	3 cut(s)	60, 756, 963
MaeI	CTAG	3 cut(s)	83, 449, 743
MaeIII	GTNAC	2 cut(s)	334, 814
MalI	GATC	5 cut(s)	92, 172, 612, 762, 867
MboI	GATC	5 cut(s)	90, 170, 610, 760, 865
MboII	GAAGA	7 cut(s)	63, 106, 160, 368, 404, 536, 680
MflI	RGATCY	2 cut(s)	90, 865
MlsI	TGGCCA	2 cut(s)	418, 506
MluCI	AATT	5 cut(s)	109, 133, 578, 709, 943
MluNI	TGGCCA	2 cut(s)	418, 506
MnlI	CCTC	5 cut(s)	130, 295, 436, 744, 971
Mox20I	TGGCCA	2 cut(s)	418, 506
MroXI	GAANNNNTTC	1 cut(s)	687
MscI	TGGCCA	2 cut(s)	418, 506
MseI	TTAA	6 cut(s)	42, 408, 476, 495, 750, 855
MslI	CAYNNNNRTG	2 cut(s)	315, 639
Msp20I	TGGCCA	2 cut(s)	418, 506
MspA1I	CMGCKG	2 cut(s)	547, 595
MspR9I	CCNGG	1 cut(s)	200
Mva1269I	GAATGC	1 cut(s)	971
MvaI	CCWGG	1 cut(s)	200
MvnI	CGCG	2 cut(s)	246, 595
MwoI	GCNNNNNNNGC	1 cut(s)	189
NcoI	CCATGG	1 cut(s)	501
NdeII	GATC	5 cut(s)	90, 170, 610, 760, 865
NlaIII	CATG	6 cut(s)	215, 314, 505, 740, 853, 911
NmuCI	GTSAC	2 cut(s)	334, 814
PagI	TCATGA	1 cut(s)	907
PctI	GAATGC	1 cut(s)	971
PdmI	GAANNNNTTC	1 cut(s)	687
PfeI	GAWTC	1 cut(s)	68
PkrI	GCNGC	2 cut(s)	194, 307
Psp6I	CCWGG	1 cut(s)	198
PspGI	CCWGG	1 cut(s)	198
PspPI	GGNCC	1 cut(s)	884
PsrI	GAACNNNNNNTAC	2 cut(s)	714, 746
PstNI	CAGNNNCTG	1 cut(s)	869
PsuI	RGATCY	2 cut(s)	90, 865
PvuII	CAGCTG	1 cut(s)	547
RsaI	GTAC	5 cut(s)	243, 296, 660, 723, 929
RsaNI	GTAC	5 cut(s)	242, 295, 659, 722, 928
RseI	CAYNNNNRTG	2 cut(s)	315, 639
SacII	CCGCGG	1 cut(s)	596
SaqAI	TTAA	6 cut(s)	42, 408, 476, 495, 750, 855
SatI	GCNGC	2 cut(s)	193, 306
Sau3AI	GATC	5 cut(s)	90, 170, 610, 760, 865
Sau96I	GGNCC	1 cut(s)	884
ScaI	AGTACT	2 cut(s)	296, 660
ScrFI	CCNGG	1 cut(s)	200
SfaNI	GCATC	3 cut(s)	60, 756, 963
SfcI	CTRYAG	2 cut(s)	63, 843
Sfr303I	CCGCGG	1 cut(s)	596
SgrBI	CCGCGG	1 cut(s)	596
SinI	GGWCC	1 cut(s)	884
SmiMI	CAYNNNNRTG	2 cut(s)	315, 639
SmlI	CTYRAG	1 cut(s)	158
SmoI	CTYRAG	1 cut(s)	158
SpeI	ACTAGT	1 cut(s)	742
Sse9I	AATT	5 cut(s)	109, 133, 578, 709, 943
SsiI	CCGC	2 cut(s)	593, 595
SspI	AATATT	1 cut(s)	789
SspMI	CTAG	3 cut(s)	83, 449, 743
StyD4I	CCNGG	1 cut(s)	198
StyI	CCWWGG	2 cut(s)	501, 920
TaaI	ACNGT	4 cut(s)	261, 368, 658, 1000
TaqI	TCGA	1 cut(s)	379
TasI	AATT	5 cut(s)	109, 133, 578, 709, 943
TatI	WGTACW	3 cut(s)	294, 658, 927
TfiI	GAWTC	1 cut(s)	68
Tru1I	TTAA	6 cut(s)	42, 408, 476, 495, 750, 855
Tru9I	TTAA	6 cut(s)	42, 408, 476, 495, 750, 855
TscAI	CASTG	3 cut(s)	264, 282, 894
TseFI	GTSAC	2 cut(s)	334, 814
TseI	GCWGC	2 cut(s)	192, 305
Tsp45I	GTSAC	2 cut(s)	334, 814
TspDTI	ATGAA	3 cut(s)	33, 468, 924
TspGWI	ACGGA	1 cut(s)	497
TspRI	CASTG	3 cut(s)	264, 282, 894
VpaK11BI	GGWCC	1 cut(s)	884
XapI	RAATTY	1 cut(s)	943
XmnI	GAANNNNTTC	1 cut(s)	687
XspI	CTAG	3 cut(s)	83, 449, 743
ZrmI	AGTACT	2 cut(s)	296, 660

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.