Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0002033

Physical Location & Seq

Genomic Coordinates Forward (+)

1836707 .. 1839248

Gene Structure 2542 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000015843

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1140 bp

ATGAAGATGAGGTACCTGGAAGCAACCACAGTAGCTGCTTTGAGTTCTCTAGCTCATTTTATGAGACCTCGCTGCCTCAGTGCGACACGTCGAGTAAAGATGTCCATGAGTGTCCGAGAGATGATCATCAAAGGTGATAAACCACCCCCTCAATATATTGTTAAAGAAAGCAAGTTTGGAGCTATAGAGTCTTCCCCAGAATTGGGTCAAATCCCCACCATTGATGTCAGTCTCTTCTCCCCATCATCAATTGATACCAAGGAAGCAGAGGTCGAACTGAACAAACTCAGAACAGCTCTCAGCTCATCAGGCTGCATCCAGGCAATAGGTCATGGGATTTCAAGTTCCATCCTGGACATGGTACGCGAAACTGCGAAACGATTCTTTGAACTTCCGGTAAAAGAGAAGCAAAAATACTCCAGACAAATTTATGGTGGCCGTGAAGGATATGGGGAGGATGTCATTGTCTCAGAGAAGCAAGTTCTTGATTGGTCCCACCGCCTAATTCTTTATGTATTTCCTGAAGATCATAGAAGGCTCGATCTCTGGCCAGAAAATCCAGATGATTTTGGAGAGGTTGTGCATGAATATGCAACAAAGGTAAAGTTCATGATGGATGTTCTGTTTAAGGCCATGGCGAAATCGTTGAAGTTGGAAGAGAACAGCTTTTCAGATAAGCTGTTTGGAGAGCAAGCTCAAATGATAGCAAGACTCAACTTCTATCCGCCGTGTTCAATAGCCGATCAGGTGTTCGGTTTGAAGCCTCATACAGATGGCTCAGGAATGACTGTTCTGTTGCAGGACAAAGAAGTGGAGGGTCTTCAAGTTTTGGTGGATGGTAAATGGTTTAGAGTCCCCATTGTGCCTGATGCCATTGTTGTTAATCTTGGTGATCAAATGCAGATTATGAGTAATGGGATATTCAAGAGCCCACTGCACAGGGTGGTGACAAATCCAGAAAGGATGAGGCTATCTGTGGCTTTGTTCAATGAACCAGGTCCTGAGACTGAGATTGGTCCAGTGGAGAAACTGATGGATGAGACAATGCCAAGGTTATACAAAAATGTCAAAAACTATTACAGTATCAACTATGCCTGTTATCAGAGAGGAGAAGTAGCACTTGAAACACTGAAGTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

380

Amino Acids

43.03

Weight (kDa)

6.43

Isoelectric Point (pI)

39.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	71 - 186	1.8e-21	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	234 - 332	2e-31	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002033)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g02111 FvH4_1g02112 FvH4_1g02120
malus_domestica	MD02G1019300.v1.1 MD02G1019600.v1.1
prunus_persica	Prupe.7G251800_v2.0.a1 Prupe.7G251800_v2.0.a1
pyrus_communis	pycom02g01720 pycom02g01730 pycom02g01740
rosa_chinensis	RchiOBHm_Chr2g0087171 RchiOBHm_Chr2g0087181 RchiOBHm_Chr2g0087191 RchiOBHm_Chr2g0087251 RchiOBHm_Chr6g0295511
rosa_laevigata	RLG00000011795 RLG00000015839 RLG00000015840 RLG00000015841 RLG00000015843 RLG00000015847
rosa_multiflora	Rmu_co8200202.1_g000001 Rmu_sc0003367.1_g000007 Rmu_sc0009355.1_g000005 Rmu_sc0009802.1_g000001 Rmu_sc0011562.1_g000001 Rmu_sc0018794.1_g000006 Rmu_ssc0000239.1_g000011
rosa_roxburghii	Rroxscaffold_2G00153820 Rroxscaffold_7G00172410
rosa_rugosa	Rorug01G0473200 Rorug01G0473600 Rorug06G0251600
rosa_samantha	Rh2AG026300 Rh2AG026500 Rh2AG027000 Rh2CG026800 Rh2CG026900 Rh2CG027000 Rh2CG027400 Rh2DG026600 Rh6BG373100 Rh6CG379300 Rh6DG365800
rosa_wichuraiana	Rw2G002110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	12
AccB1I	GGYRCC	1 cut(s)	12
AccII	CGCG	1 cut(s)	366
AciI	CCGC	2 cut(s)	499, 725
AcoI	YGGCCR	2 cut(s)	436, 548
AcsI	RAATTY	1 cut(s)	426
AcuI	CTGAAG	1 cut(s)	543
AdeI	CACNNNGTG	1 cut(s)	943
AfaI	GTAC	2 cut(s)	14, 363
AfiI	CCNNNNNNNGG	3 cut(s)	202, 203, 358
AflIII	ACRYGT	1 cut(s)	86
AgsI	TTSAA	9 cut(s)	342, 389, 649, 735, 760, 824, 925, 988, 1124
AjiI	CACGTC	1 cut(s)	89
AjnI	CCWGG	4 cut(s)	15, 318, 351, 994
AjuI	GAANNNNNNNTTGG	2 cut(s)	159, 191
AloI	GAACNNNNNNTCC	4 cut(s)	328, 360, 774, 806
AluBI	AGCT	8 cut(s)	35, 53, 182, 296, 303, 666, 679, 695
AluI	AGCT	8 cut(s)	35, 53, 182, 296, 303, 666, 679, 695
Alw26I	GTCTC	5 cut(s)	58, 236, 472, 998, 1034
AlwNI	CAGNNNCTG	2 cut(s)	35, 1001
AoxI	GGCC	3 cut(s)	436, 548, 630
ApeKI	GCWGC	3 cut(s)	35, 72, 312
ApoI	RAATTY	1 cut(s)	426
Asp700I	GAANNNNTTC	1 cut(s)	380
Asp718I	GGTACC	1 cut(s)	12
AspS9I	GGNCC	3 cut(s)	492, 998, 1016
AsuHPI	GGTGA	3 cut(s)	146, 902, 958
AvaII	GGWCC	3 cut(s)	492, 998, 1016
BalI	TGGCCA	1 cut(s)	550
BanI	GGYRCC	1 cut(s)	12
BanII	GRGCYC	1 cut(s)	932
BarI	GAAGNNNNNNTAC	3 cut(s)	28, 398, 430
BbsI	GAAGAC	2 cut(s)	183, 812
BbvI	GCAGC	3 cut(s)	22, 59, 299
BccI	CCATC	6 cut(s)	250, 356, 607, 767, 830, 1027
BceAI	ACGGC	2 cut(s)	423, 712
BciT130I	CCWGG	4 cut(s)	17, 320, 353, 996
BclI	TGATCA	2 cut(s)	123, 892
BcoDI	GTCTC	5 cut(s)	58, 236, 472, 998, 1034
BfaI	CTAG	1 cut(s)	50
BfmI	CTRYAG	1 cut(s)	183
BisI	GCNGC	3 cut(s)	36, 73, 313
BlsI	GCNGC	3 cut(s)	37, 74, 314
Bme1390I	CCNGG	4 cut(s)	17, 320, 353, 996
Bme18I	GGWCC	3 cut(s)	492, 998, 1016
BmgBI	CACGTC	1 cut(s)	89
BmgT120I	GGNCC	3 cut(s)	492, 998, 1016
BmiI	GGNNCC	2 cut(s)	14, 494
BmrFI	CCNGG	4 cut(s)	17, 320, 353, 996
BmsI	GCATC	2 cut(s)	324, 859
BpiI	GAAGAC	2 cut(s)	183, 812
BpmI	CTGGAG	1 cut(s)	403
Bpu10I	CCTNAGC	1 cut(s)	778
BsaBI	GATNNNNATC	1 cut(s)	125
BsaI	GGTCTC	1 cut(s)	58
BsaJI	CCNNGG	3 cut(s)	258, 633, 1049
BsaWI	WCCGGW	1 cut(s)	394
BsaXI	ACNNNNNCTCC	2 cut(s)	564, 594
Bsc4I	CCNNNNNNNGG	3 cut(s)	202, 203, 358
Bse1I	ACTGG	1 cut(s)	1019
Bse8I	GATNNNNATC	1 cut(s)	125
BseBI	CCWGG	4 cut(s)	17, 320, 353, 996
BseDI	CCNNGG	3 cut(s)	258, 633, 1049
BseGI	GGATG	7 cut(s)	315, 348, 463, 622, 841, 969, 1042
BseJI	GATNNNNATC	1 cut(s)	125
BseLI	CCNNNNNNNGG	3 cut(s)	202, 203, 358
BseMII	CTCAG	7 cut(s)	91, 301, 313, 483, 792, 993, 999
BseNI	ACTGG	1 cut(s)	1019
BseRI	GAGGAG	1 cut(s)	1122
BseXI	GCAGC	3 cut(s)	22, 59, 299
BsgI	GTGCAG	1 cut(s)	920
Bsh1236I	CGCG	1 cut(s)	366
BshFI	GGCC	3 cut(s)	438, 550, 632
BshNI	GGYRCC	1 cut(s)	12
BsiSI	CCGG	1 cut(s)	395
BslFI	GGGAC	2 cut(s)	478, 839
BslI	CCNNNNNNNGG	3 cut(s)	202, 203, 358
BsmAI	GTCTC	5 cut(s)	58, 236, 472, 998, 1034
BsmFI	GGGAC	2 cut(s)	478, 839
BsnI	GGCC	3 cut(s)	438, 550, 632
Bso31I	GGTCTC	1 cut(s)	58
Bsp1286I	GDGCHC	1 cut(s)	932
Bsp143I	GATC	5 cut(s)	123, 526, 541, 742, 892
Bsp19I	CCATGG	1 cut(s)	633
BspACI	CCGC	2 cut(s)	499, 725
BspANI	GGCC	3 cut(s)	438, 550, 632
BspCNI	CTCAG	7 cut(s)	90, 300, 312, 482, 791, 994, 1000
BspFNI	CGCG	1 cut(s)	366
BspHI	TCATGA	1 cut(s)	609
BspLI	GGNNCC	2 cut(s)	14, 494
BspT107I	GGYRCC	1 cut(s)	12
BspTNI	GGTCTC	1 cut(s)	58
BsrI	ACTGG	1 cut(s)	1019
BssECI	CCNNGG	3 cut(s)	258, 633, 1049
BssMI	GATC	5 cut(s)	123, 526, 541, 742, 892
BssT1I	CCWWGG	3 cut(s)	258, 633, 1049
Bst2UI	CCWGG	4 cut(s)	17, 320, 353, 996
Bst4CI	ACNGT	3 cut(s)	31, 790, 1082
Bst6I	CTCTTC	2 cut(s)	239, 651
BstC8I	GCNNGC	1 cut(s)	693
BstDEI	CTNAG	7 cut(s)	77, 287, 299, 469, 778, 1002, 1008
BstDSI	CCRYGG	1 cut(s)	633
BstF5I	GGATG	7 cut(s)	315, 348, 463, 622, 841, 969, 1042
BstFNI	CGCG	1 cut(s)	366
BstKTI	GATC	5 cut(s)	126, 529, 544, 745, 895
BstMAI	GTCTC	5 cut(s)	58, 236, 472, 998, 1034
BstMBI	GATC	5 cut(s)	123, 526, 541, 742, 892
BstMWI	GCNNNNNNNGC	1 cut(s)	309
BstNI	CCWGG	4 cut(s)	17, 320, 353, 996
BstSCI	CCNGG	4 cut(s)	15, 318, 351, 994
BstSFI	CTRYAG	1 cut(s)	183
BstUI	CGCG	1 cut(s)	366
BstV1I	GCAGC	3 cut(s)	22, 59, 299
BstV2I	GAAGAC	2 cut(s)	183, 812
BsuRI	GGCC	3 cut(s)	438, 550, 632
BtgI	CCRYGG	1 cut(s)	633
BtrI	CACGTC	1 cut(s)	89
BtsCI	GGATG	7 cut(s)	315, 348, 463, 622, 841, 969, 1042
BtsI	GCAGTG	1 cut(s)	932
BtsIMutI	CAGTG	4 cut(s)	85, 932, 1026, 1127
Cac8I	GCNNGC	1 cut(s)	693
CaiI	CAGNNNCTG	2 cut(s)	35, 1001
CciI	TCATGA	1 cut(s)	609
Cfr13I	GGNCC	3 cut(s)	492, 998, 1016
CsiI	ACCWGGT	1 cut(s)	994
Csp6I	GTAC	2 cut(s)	13, 362
CviAII	CATG	6 cut(s)	106, 332, 358, 584, 610, 634
CviQI	GTAC	2 cut(s)	13, 362
DdeI	CTNAG	7 cut(s)	77, 287, 299, 469, 778, 1002, 1008
DpnI	GATC	5 cut(s)	125, 528, 543, 744, 894
DpnII	GATC	5 cut(s)	123, 526, 541, 742, 892
DraIII	CACNNNGTG	1 cut(s)	943
EaeI	YGGCCR	2 cut(s)	436, 548
Eam1104I	CTCTTC	2 cut(s)	239, 651
EarI	CTCTTC	2 cut(s)	239, 651
EciI	GGCGGA	1 cut(s)	714
Eco130I	CCWWGG	3 cut(s)	258, 633, 1049
Eco24I	GRGCYC	1 cut(s)	932
Eco31I	GGTCTC	1 cut(s)	58
Eco47I	GGWCC	3 cut(s)	492, 998, 1016
Eco57I	CTGAAG	1 cut(s)	543
EcoO109I	RGGNCCY	1 cut(s)	998
EcoRII	CCWGG	4 cut(s)	15, 318, 351, 994
EcoT14I	CCWWGG	3 cut(s)	258, 633, 1049
EcoT38I	GRGCYC	1 cut(s)	932
ErhI	CCWWGG	3 cut(s)	258, 633, 1049
FaeI	CATG	6 cut(s)	109, 335, 361, 587, 613, 637
FalI	AAGNNNNNCTT	2 cut(s)	1104, 1136
FaqI	GGGAC	2 cut(s)	478, 839
FatI	CATG	6 cut(s)	105, 331, 357, 583, 609, 633
FbaI	TGATCA	2 cut(s)	123, 892
Fnu4HI	GCNGC	3 cut(s)	36, 73, 313
FokI	GGATG	7 cut(s)	302, 335, 470, 629, 848, 976, 1049
FriOI	GRGCYC	1 cut(s)	932
Fsp4HI	GCNGC	3 cut(s)	36, 73, 313
FspBI	CTAG	1 cut(s)	50
GluI	GCNGC	3 cut(s)	36, 73, 313
GsuI	CTGGAG	1 cut(s)	403
HaeIII	GGCC	3 cut(s)	438, 550, 632
HapII	CCGG	1 cut(s)	395
Hin1II	CATG	6 cut(s)	109, 335, 361, 587, 613, 637
HinfI	GANTC	4 cut(s)	188, 381, 711, 852
HpaII	CCGG	1 cut(s)	395
HphI	GGTGA	3 cut(s)	146, 902, 958
Hpy188I	TCNGA	5 cut(s)	116, 290, 472, 673, 1104
Hpy188III	TCNNGA	9 cut(s)	420, 485, 521, 560, 610, 780, 925, 956, 1001
Hpy99I	CGWCG	1 cut(s)	93
HpyAV	CCTTC	2 cut(s)	437, 528
HpyCH4III	ACNGT	3 cut(s)	31, 790, 1082
HpyCH4IV	ACGT	1 cut(s)	88
HpyCH4V	TGCA	6 cut(s)	315, 583, 593, 799, 901, 937
HpyF10VI	GCNNNNNNNGC	1 cut(s)	309
HpyF3I	CTNAG	7 cut(s)	77, 287, 299, 469, 778, 1002, 1008
HpySE526I	ACGT	1 cut(s)	88
Hsp92II	CATG	6 cut(s)	109, 335, 361, 587, 613, 637
KpnI	GGTACC	1 cut(s)	16
Ksp22I	TGATCA	2 cut(s)	123, 892
Kzo9I	GATC	5 cut(s)	123, 526, 541, 742, 892
LmnI	GCTCC	1 cut(s)	179
Lsp1109I	GCAGC	3 cut(s)	22, 59, 299
LweI	GCATC	2 cut(s)	324, 859
MabI	ACCWGGT	1 cut(s)	994
MaeI	CTAG	1 cut(s)	50
MaeII	ACGT	1 cut(s)	88
MaeIII	GTNAC	1 cut(s)	946
MalI	GATC	5 cut(s)	125, 528, 543, 744, 894
MboI	GATC	5 cut(s)	123, 526, 541, 742, 892
MboII	GAAGA	6 cut(s)	16, 183, 226, 536, 668, 812
MfeI	CAATTG	1 cut(s)	249
MhlI	GDGCHC	1 cut(s)	932
MlsI	TGGCCA	1 cut(s)	550
MluCI	AATT	4 cut(s)	200, 249, 426, 504
MluNI	TGGCCA	1 cut(s)	550
MlyI	GAGTC	3 cut(s)	197, 705, 861
MmeI	TCCRAC	1 cut(s)	633
Mox20I	TGGCCA	1 cut(s)	550
MroXI	GAANNNNTTC	1 cut(s)	380
MscI	TGGCCA	1 cut(s)	550
MseI	TTAA	3 cut(s)	162, 627, 882
MslI	CAYNNNNRTG	2 cut(s)	588, 771
Msp20I	TGGCCA	1 cut(s)	550
MspI	CCGG	1 cut(s)	395
MspR9I	CCNGG	4 cut(s)	17, 320, 353, 996
MunI	CAATTG	1 cut(s)	249
MvaI	CCWGG	4 cut(s)	17, 320, 353, 996
MvnI	CGCG	1 cut(s)	366
MwoI	GCNNNNNNNGC	1 cut(s)	309
NcoI	CCATGG	1 cut(s)	633
NdeII	GATC	5 cut(s)	123, 526, 541, 742, 892
NlaIII	CATG	6 cut(s)	109, 335, 361, 587, 613, 637
NlaIV	GGNNCC	2 cut(s)	14, 494
NmuCI	GTSAC	1 cut(s)	946
PagI	TCATGA	1 cut(s)	609
PdmI	GAANNNNTTC	1 cut(s)	380
PfeI	GAWTC	1 cut(s)	381
PfoI	TCCNGGA	1 cut(s)	351
PkrI	GCNGC	3 cut(s)	37, 74, 314
PleI	GAGTC	3 cut(s)	196, 705, 860
PpsI	GAGTC	3 cut(s)	196, 705, 860
PpuMI	RGGWCCY	1 cut(s)	998
Psp5II	RGGWCCY	1 cut(s)	998
Psp6I	CCWGG	4 cut(s)	15, 318, 351, 994
PspGI	CCWGG	4 cut(s)	15, 318, 351, 994
PspN4I	GGNNCC	2 cut(s)	14, 494
PspPI	GGNCC	3 cut(s)	492, 998, 1016
PspPPI	RGGWCCY	1 cut(s)	998
PstNI	CAGNNNCTG	2 cut(s)	35, 1001
RsaI	GTAC	2 cut(s)	14, 363
RsaNI	GTAC	2 cut(s)	13, 362
RseI	CAYNNNNRTG	2 cut(s)	588, 771
SaqAI	TTAA	3 cut(s)	162, 627, 882
SatI	GCNGC	3 cut(s)	36, 73, 313
Sau3AI	GATC	5 cut(s)	123, 526, 541, 742, 892
Sau96I	GGNCC	3 cut(s)	492, 998, 1016
SchI	GAGTC	3 cut(s)	197, 705, 861
ScrFI	CCNGG	4 cut(s)	17, 320, 353, 996
SduI	GDGCHC	1 cut(s)	932
SexAI	ACCWGGT	1 cut(s)	994
SfaNI	GCATC	2 cut(s)	324, 859
SfcI	CTRYAG	1 cut(s)	183
SinI	GGWCC	3 cut(s)	492, 998, 1016
SmiMI	CAYNNNNRTG	2 cut(s)	588, 771
Sse9I	AATT	4 cut(s)	200, 249, 426, 504
SsiI	CCGC	2 cut(s)	499, 725
SspMI	CTAG	1 cut(s)	50
StyD4I	CCNGG	4 cut(s)	15, 318, 351, 994
StyI	CCWWGG	3 cut(s)	258, 633, 1049
TaaI	ACNGT	3 cut(s)	31, 790, 1082
TaiI	ACGT	1 cut(s)	91
TaqI	TCGA	3 cut(s)	91, 273, 540
TasI	AATT	4 cut(s)	200, 249, 426, 504
TfiI	GAWTC	1 cut(s)	381
Tru1I	TTAA	3 cut(s)	162, 627, 882
Tru9I	TTAA	3 cut(s)	162, 627, 882
TscAI	CASTG	4 cut(s)	85, 939, 1026, 1134
TseFI	GTSAC	1 cut(s)	946
TseI	GCWGC	3 cut(s)	35, 72, 312
Tsp45I	GTSAC	1 cut(s)	946
TspDTI	ATGAA	4 cut(s)	17, 598, 600, 1005
TspRI	CASTG	4 cut(s)	85, 939, 1026, 1134
VpaK11BI	GGWCC	3 cut(s)	492, 998, 1016
XapI	RAATTY	1 cut(s)	426
XcmI	CCANNNNNNNNNTGG	1 cut(s)	355
XmnI	GAANNNNTTC	1 cut(s)	380
XspI	CTAG	1 cut(s)	50

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.